Clone Sequence Records
BO14007.5prime Sequence
335 bp (334 high quality bases) assembled on 2006-05-29
> BO14007.5prime
GAAGTTATCAGTCGACATGGGCATTCCGGATATCCGACTGCTGGTGACGC
TGGATTTCGAGGTCTATGGACATGTACAAGGCCTGAATCTCACGAAAGAC
ACCCGCGATCGCTGCACCAAGGCGGGAATCACTGGCTGGGTGAAGAACAG
CAAACAGGGCACCATTGTGGGCAAGATGCAGGGGCCCAAGGAGGAGGTGG
ACAAGATGATCACCTGGCTGTCCACTGAGGGCTCACCCGGCTGCCAAATC
GATCGCTGTGAGGTCCGGAACCAGGGCAATCTCAGCCGACTGGACTACAA
GGACTTTGCCATTAGGTTTGCAAGCTTTCTAGACC
BO14007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-PA | 306 | CG14022-RA | 1..303 | 17..319 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-RB | 617 | CG14022-RB | 207..514 | 12..319 | 1525 | 99.7 | Plus |
CG14022-RA | 652 | CG14022-RA | 242..549 | 12..319 | 1525 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5328252..5328381 | 208..79 | 650 | 100 | Minus |
2L | 23513712 | 2L | 5328078..5328189 | 319..208 | 560 | 100 | Minus |
2L | 23513712 | 2L | 5328569..5328638 | 81..12 | 335 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:18:07 has no hits.
BO14007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:56 Download gff for
BO14007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-PA | 1..306 | 17..320 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:25 Download gff for
BO14007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-PA | 1..306 | 17..320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:15:03 Download gff for
BO14007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 237..549 | 7..319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:32 Download gff for
BO14007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 237..549 | 7..319 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:32 Download gff for
BO14007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5328253..5328379 | 81..207 | 100 | <- | Minus |
2L | 5328570..5328643 | 7..80 | 96 | | Minus |
2L | 5328078..5328189 | 208..319 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:15:03 Download gff for
BO14007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5328078..5328189 | 208..319 | 100 | <- | Minus |
arm_2L | 5328253..5328379 | 81..207 | 100 | <- | Minus |
arm_2L | 5328570..5328643 | 7..80 | 96 | | Minus |
BO14007.complete Sequence
337 bp assembled on 2006-10-11
GenBank Submission: FJ632991
> BO14007.complete
GAAGTTATCAGTCGACATGGGCATTCCGGATATCCGACTGCTGGTGACGC
TGGATTTCGAGGTCTATGGACATGTACAAGGCCTGAATCTCACGAAAGAC
ACCCGCGATCGCTGCACCAAGGCGGGAATCACTGGCTGGGTGAAGAACAG
CAAACAGGGCACCATTGTGGGCAAGATGCAGGGGCCCAAGGAGGAGGTGG
ACAAGATGATCACCTGGCTGTCCACTGAGGGCTCACCCGGCTGCCAAATC
GATCGCTGTGAGGTCCGGAACCAGGGCAATCTCAGCCGACTGGACTACAA
GGACTTTGCCATTAGGTTTGCAAGCTTTCTAGACCAT
BO14007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-RB | 306 | CG14022-PB | 1..303 | 17..319 | 1515 | 100 | Plus |
CG14022-RA | 306 | CG14022-PA | 1..303 | 17..319 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-RB | 617 | CG14022-RB | 207..514 | 12..319 | 1525 | 99.7 | Plus |
CG14022-RA | 652 | CG14022-RA | 242..549 | 12..319 | 1525 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5328252..5328381 | 208..79 | 650 | 100 | Minus |
2L | 23513712 | 2L | 5328078..5328189 | 319..208 | 560 | 100 | Minus |
2L | 23513712 | 2L | 5328569..5328638 | 81..12 | 335 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:53:12 has no hits.
BO14007.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:53 Download gff for
BO14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 1..306 | 17..320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:48 Download gff for
BO14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 228..540 | 7..319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:47 Download gff for
BO14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 247..549 | 17..321 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:53 Download gff for
BO14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 228..540 | 7..319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:13 Download gff for
BO14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14022-RA | 247..549 | 17..321 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:13 Download gff for
BO14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5328076..5328189 | 208..321 | 98 | <- | Minus |
2L | 5328253..5328379 | 81..207 | 100 | <- | Minus |
2L | 5328570..5328633 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:47 Download gff for
BO14007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5328076..5328189 | 208..321 | 98 | <- | Minus |
arm_2L | 5328253..5328379 | 81..207 | 100 | <- | Minus |
arm_2L | 5328570..5328633 | 17..80 | 100 | | Minus |
BO14007.pep Sequence
Translation from 16 to 337
> BO14007.pep
MGIPDIRLLVTLDFEVYGHVQGLNLTKDTRDRCTKAGITGWVKNSKQGTI
VGKMQGPKEEVDKMITWLSTEGSPGCQIDRCEVRNQGNLSRLDYKDFAIR
FASFLDH
BO14007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14022-PB | 101 | CG14022-PB | 1..101 | 1..101 | 540 | 100 | Plus |
CG14022-PA | 101 | CG14022-PA | 1..101 | 1..101 | 540 | 100 | Plus |
Acyp-PB | 120 | CG16870-PB | 10..97 | 13..100 | 170 | 37.5 | Plus |
Acyp-PA | 120 | CG16870-PA | 10..97 | 13..100 | 170 | 37.5 | Plus |
CG34161-PC | 125 | CG34161-PC | 33..124 | 9..100 | 168 | 35.9 | Plus |