Clone BO14007 Report

Search the DGRC for BO14007

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG14022-RA
Protein status:BO14007.pep: validated full length
Sequenced Size:337

Clone Sequence Records

BO14007.5prime Sequence

335 bp (334 high quality bases) assembled on 2006-05-29

> BO14007.5prime
GAAGTTATCAGTCGACATGGGCATTCCGGATATCCGACTGCTGGTGACGC
TGGATTTCGAGGTCTATGGACATGTACAAGGCCTGAATCTCACGAAAGAC
ACCCGCGATCGCTGCACCAAGGCGGGAATCACTGGCTGGGTGAAGAACAG
CAAACAGGGCACCATTGTGGGCAAGATGCAGGGGCCCAAGGAGGAGGTGG
ACAAGATGATCACCTGGCTGTCCACTGAGGGCTCACCCGGCTGCCAAATC
GATCGCTGTGAGGTCCGGAACCAGGGCAATCTCAGCCGACTGGACTACAA
GGACTTTGCCATTAGGTTTGCAAGCTTTCTAGACC

BO14007.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-PA 306 CG14022-RA 1..303 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-RB 617 CG14022-RB 207..514 12..319 1525 99.7 Plus
CG14022-RA 652 CG14022-RA 242..549 12..319 1525 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5328252..5328381 208..79 650 100 Minus
2L 23513712 2L 5328078..5328189 319..208 560 100 Minus
2L 23513712 2L 5328569..5328638 81..12 335 98.6 Minus
Blast to na_te.dros performed on 2015-02-11 11:18:07 has no hits.

BO14007.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:56 Download gff for BO14007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14022-PA 1..306 17..320 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:25 Download gff for BO14007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14022-PA 1..306 17..320 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:15:03 Download gff for BO14007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 237..549 7..319 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:32 Download gff for BO14007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 237..549 7..319 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:32 Download gff for BO14007.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5328253..5328379 81..207 100 <- Minus
2L 5328570..5328643 7..80 96   Minus
2L 5328078..5328189 208..319 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:15:03 Download gff for BO14007.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5328078..5328189 208..319 100 <- Minus
arm_2L 5328253..5328379 81..207 100 <- Minus
arm_2L 5328570..5328643 7..80 96   Minus

BO14007.complete Sequence

337 bp assembled on 2006-10-11

GenBank Submission: FJ632991

> BO14007.complete
GAAGTTATCAGTCGACATGGGCATTCCGGATATCCGACTGCTGGTGACGC
TGGATTTCGAGGTCTATGGACATGTACAAGGCCTGAATCTCACGAAAGAC
ACCCGCGATCGCTGCACCAAGGCGGGAATCACTGGCTGGGTGAAGAACAG
CAAACAGGGCACCATTGTGGGCAAGATGCAGGGGCCCAAGGAGGAGGTGG
ACAAGATGATCACCTGGCTGTCCACTGAGGGCTCACCCGGCTGCCAAATC
GATCGCTGTGAGGTCCGGAACCAGGGCAATCTCAGCCGACTGGACTACAA
GGACTTTGCCATTAGGTTTGCAAGCTTTCTAGACCAT

BO14007.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-RB 306 CG14022-PB 1..303 17..319 1515 100 Plus
CG14022-RA 306 CG14022-PA 1..303 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-RB 617 CG14022-RB 207..514 12..319 1525 99.7 Plus
CG14022-RA 652 CG14022-RA 242..549 12..319 1525 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5328252..5328381 208..79 650 100 Minus
2L 23513712 2L 5328078..5328189 319..208 560 100 Minus
2L 23513712 2L 5328569..5328638 81..12 335 98.6 Minus
Blast to na_te.dros performed on 2014-11-27 06:53:12 has no hits.

BO14007.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:53 Download gff for BO14007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 1..306 17..320 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:48 Download gff for BO14007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 228..540 7..319 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:47 Download gff for BO14007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 247..549 17..321 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:53 Download gff for BO14007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 228..540 7..319 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:13 Download gff for BO14007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14022-RA 247..549 17..321 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:13 Download gff for BO14007.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5328076..5328189 208..321 98 <- Minus
2L 5328253..5328379 81..207 100 <- Minus
2L 5328570..5328633 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:47 Download gff for BO14007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5328076..5328189 208..321 98 <- Minus
arm_2L 5328253..5328379 81..207 100 <- Minus
arm_2L 5328570..5328633 17..80 100   Minus

BO14007.pep Sequence

Translation from 16 to 337

> BO14007.pep
MGIPDIRLLVTLDFEVYGHVQGLNLTKDTRDRCTKAGITGWVKNSKQGTI
VGKMQGPKEEVDKMITWLSTEGSPGCQIDRCEVRNQGNLSRLDYKDFAIR
FASFLDH

BO14007.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14022-PB 101 CG14022-PB 1..101 1..101 540 100 Plus
CG14022-PA 101 CG14022-PA 1..101 1..101 540 100 Plus
Acyp-PB 120 CG16870-PB 10..97 13..100 170 37.5 Plus
Acyp-PA 120 CG16870-PA 10..97 13..100 170 37.5 Plus
CG34161-PC 125 CG34161-PC 33..124 9..100 168 35.9 Plus