Clone Sequence Records
BO14008.3prime Sequence
485 bp (484 high quality bases) assembled on 2006-05-29
> BO14008.3prime
ATGGTCTAGAAAGCTTGCAATGTAGTACAGGCGCACAACCGATTTGGTGA
TGAGTGTCTCGTTGTCGTAGAAACTGGTTTGGATAGTCACATTGCCGTTC
AAGACCTTGGCAGGCATCATCTGGGATTCGGGTGCCGCCTCGATTGTCGA
CTGCCAGGTGTTGGTGGTGTTGGCACCCACGAATCCCATCTCAAAGAACC
ACTCCTCCATGATGCGGCCCTTGAAGAGCACCTTCTGGTCCAGGCGAAAG
TTCTCCATCGACTCGATGGTGCTGAAGTTGATCTCCCGGGAAACGGCACG
CATGTCGAGTATTTTCACCGGCACTCGGGCCTCATGTTCCTGGTCCGGTG
CCGAGAAGTCCTTGTTCTCCTGCCAGATTATTTTTCCGCTGTCGGCATCC
CGCAGAATCATATAGTTGATCTGGAATCCCTTCTGGATCCTGTCCCCGGC
ACTCTGGTCGTCGGAGCCCATGTCGACTGATAACT
BO14008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9296-PA | 456 | CG9296-RA | 1..453 | 471..19 | 2240 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PrBP-RA | 1133 | CG9296-RA | 153..605 | 471..19 | 2250 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8685351..8685803 | 19..471 | 2250 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:08:31 has no hits.
BO14008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:57 Download gff for
BO14008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9296-PA | 1..456 | 18..471 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:27 Download gff for
BO14008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9296-PA | 1..456 | 18..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:36:26 Download gff for
BO14008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PrBP-RA | 148..610 | 13..479 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:26 Download gff for
BO14008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PrBP-RA | 148..610 | 13..479 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:26 Download gff for
BO14008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8685346..8685808 | 13..479 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:36:26 Download gff for
BO14008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8685346..8685808 | 13..479 | 98 | | Plus |
BO14008.5prime Sequence
487 bp (486 high quality bases) assembled on 2006-05-29
> BO14008.5prime
GAAGTTATCAGTCGACATGGGCTCCGACGACCAGAGTGCCGGGGACAGGA
TCCAGAAGGGATTCCAGATCAACTATATGATTCTGCGGGATGCCGACAGC
GGAAAAATAATCTGGCAGGAGAACAAGGACTTCTCGGCACCGGACCAGGA
ACATGAGGCCCGAGTGCCGGTGAAAATACTCGACATGCGTGCCGTTTCCC
GGGAGATCAACTTCAGCACCATCGAGTCGATGGAGAACTTTCGCCTGGAC
CAGAAGGTGCTCTTCAAGGGCCGCATCATGGAGGAGTGGTTCTTTGAGAT
GGGATTCGTGGGTGCCAACACCACCAACACCTGGCAGTCGACAATCGAGG
CGGCACCCGAATCCCAGATGATGCCTGCCAAGGTCTTGAACGGCAATGTG
ACTATCCAAACCAGTTTCTACGACAACGAGACACTCATCACCAAATCGGT
TGTGCGCCTGTACTACATTGCAAGCTTTCTAGACCAT
BO14008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9296-PA | 456 | CG9296-RA | 1..453 | 17..469 | 2240 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PrBP-RA | 1133 | CG9296-RA | 153..605 | 17..469 | 2250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8685351..8685803 | 469..17 | 2250 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:17:36 has no hits.
BO14008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:16:58 Download gff for
BO14008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9296-PA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:28 Download gff for
BO14008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9296-PA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:15:01 Download gff for
BO14008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PrBP-RA | 148..610 | 9..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:53:15 Download gff for
BO14008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PrBP-RA | 148..610 | 9..475 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:53:15 Download gff for
BO14008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8685346..8685808 | 9..475 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:15:01 Download gff for
BO14008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8685346..8685808 | 9..475 | 98 | | Minus |
BO14008.complete Sequence
487 bp assembled on 2006-10-11
GenBank Submission: FJ632992
> BO14008.complete
GAAGTTATCAGTCGACATGGGCTCCGACGACCAGAGTGCCGGGGACAGGA
TCCAGAAGGGATTCCAGATCAACTATATGATTCTGCGGGATGCCGACAGC
GGAAAAATAATCTGGCAGGAGAACAAGGACTTCTCGGCACCGGACCAGGA
ACATGAGGCCCGAGTGCCGGTGAAAATACTCGACATGCGTGCCGTTTCCC
GGGAGATCAACTTCAGCACCATCGAGTCGATGGAGAACTTTCGCCTGGAC
CAGAAGGTGCTCTTCAAGGGCCGCATCATGGAGGAGTGGTTCTTTGAGAT
GGGATTCGTGGGTGCCAACACCACCAACACCTGGCAGTCGACAATCGAGG
CGGCACCCGAATCCCAGATGATGCCTGCCAAGGTCTTGAACGGCAATGTG
ACTATCCAAACCAGTTTCTACGACAACGAGACACTCATCACCAAATCGGT
TGTGCGCCTGTACTACATTGCAAGCTTTCTAGACCAT
BO14008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PrBP-RA | 456 | CG9296-PA | 1..453 | 17..469 | 2250 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PrBP-RA | 1133 | CG9296-RA | 153..605 | 17..469 | 2250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8685351..8685803 | 469..17 | 2250 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:11:00 has no hits.
BO14008.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:54 Download gff for
BO14008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9296-RA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:50 Download gff for
BO14008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9296-RA | 147..609 | 9..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:14 Download gff for
BO14008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PrBP-RA | 153..605 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:54 Download gff for
BO14008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9296-RA | 147..609 | 9..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:02 Download gff for
BO14008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PrBP-RA | 153..605 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:02 Download gff for
BO14008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8685349..8685803 | 17..471 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:14 Download gff for
BO14008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8685349..8685803 | 17..471 | 99 | | Minus |
BO14008.pep Sequence
Translation from 16 to 487
> BO14008.pep
MGSDDQSAGDRIQKGFQINYMILRDADSGKIIWQENKDFSAPDQEHEARV
PVKILDMRAVSREINFSTIESMENFRLDQKVLFKGRIMEEWFFEMGFVGA
NTTNTWQSTIEAAPESQMMPAKVLNGNVTIQTSFYDNETLITKSVVRLYY
IASFLDH
BO14008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PrBP-PA | 151 | CG9296-PA | 1..151 | 1..151 | 779 | 100 | Plus |
