Clone Sequence Records
BO14010.3prime Sequence
693 bp (622 high quality bases) assembled on 2006-05-29
> BO14010.3prime
ATGGTCTAGAAAGCTTGCGAACTCCCACTGTGTGGCCGAATCGGTTCCAT
CATCCAGCAGCTTGAACGCCCCGTTCTTCGTAGCGCCCAGGTACTTGCCC
TGCTGCGATCTTATGCAGATCCTGGTCGGCTCGCGAAGCTCGAGGAAGAA
ACCATCGCTGGGCGCATCGGCATCCACCGAGATGCTTTCGCCCTCGATGC
GCCAGTATTTGCCGCTATGCGCCTTCAGATGCACCAGGCCCTTCTGGGCC
CGCTCCACCAGAATCGTTTCATAGGTGGCCTTATTGCACTCGAGCTTCAG
GTTGCCGGGCGTGCGATAGCCCACGAATCCCTGCTCGCACTTCAGTACAA
GAATTGGTCTATTAATCAAGTAGAAATAGAACTTGGCTATCTCCTCGATC
GACTCCGAGGTGGCAAACAGATGACCAGAGCGCTTGGTGGCCAAGAACTT
GCCGTTGTTAGCCCGGAACGAGAGCGAGCCATCGCCGTGCCAGATCAGCT
CGAAGAGAGCGTCGGCACAGCGACGATTGCCGGTGGCCTGGATGCCACCG
CCCGCCGACAGACACCAGTAGCGATCCTGGGTGGTGCGGAAGGGCCCAAC
GGTGCGCCGACCAATCGTACTCCAGCTGGAACGTCTCGTTCTCACCGACC
TCCTCCTGTTTGGCCGTCACATCGACGCCCTGGCTAACGCTCA
BO14010.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32858-PC | 1695 | sn-RC | 1121..1692 | 590..19 | 2860 | 100 | Minus |
| CG32858-PA | 1539 | sn-RA | 965..1536 | 590..19 | 2860 | 100 | Minus |
| CG32858-PB | 1539 | sn-RB | 965..1536 | 590..19 | 2860 | 100 | Minus |
| CG32858-PC | 1695 | sn-RC | 1019..1121 | 693..591 | 415 | 96.1 | Minus |
| CG32858-PA | 1539 | sn-RA | 863..965 | 693..591 | 415 | 96.1 | Minus |
| CG32858-PB | 1539 | sn-RB | 863..965 | 693..591 | 415 | 96.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sn-RG | 2322 | CG32858-RG | 1088..1761 | 693..19 | 3290 | 99.3 | Minus |
| sn-RE | 2451 | CG32858-RE | 1217..1890 | 693..19 | 3290 | 99.3 | Minus |
| sn-RB | 3358 | CG32858-RB | 1608..2281 | 693..19 | 3290 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7984706..7985039 | 693..359 | 1565 | 98.5 | Minus |
| X | 23542271 | X | 7985100..7985356 | 366..110 | 1270 | 99.6 | Minus |
| X | 23542271 | X | 7985432..7985524 | 111..19 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:09:51 has no hits.
BO14010.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:16:59 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:29 Download gff for
BO14010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32858-PB | 864..1539 | 18..692 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:36:45 Download gff for
BO14010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sn-RB | 1609..2281 | 19..692 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:40 Download gff for
BO14010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sn-RB | 1609..2281 | 19..692 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:40 Download gff for
BO14010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7984707..7985039 | 359..692 | 98 | -> | Minus |
| X | 7985108..7985356 | 110..358 | 100 | -> | Minus |
| X | 7985434..7985524 | 19..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:36:45 Download gff for
BO14010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7878740..7879072 | 359..692 | 98 | -> | Minus |
| arm_X | 7879141..7879389 | 110..358 | 100 | -> | Minus |
| arm_X | 7879467..7879557 | 19..109 | 100 | | Minus |
BO14010.5prime Sequence
649 bp (646 high quality bases) assembled on 2006-05-29
> BO14010.5prime
GAAGTTATCAGTCGACATGACGCGAATCATTACGTCCGGATTGTCCTGGA
ACACCTCTTCGAATGCCTGCCAAAGCAAGGAGGAAAAAAATAAGAACACC
ATTAAGTTCGATCTTCCTTACGCAAAGAAGCCGGATTCCGGAGACAGCCT
CAAGATTGCTCCCATCAGCACCATGAACGGCCAGGGCTGCGAGCTGGGCC
ACAGCAATGGCGACATCATCTCACAGAATCAACAGAAGGGATGGTGGACC
ATCGGCCTGATCAACGGCCAGCACAAGTACATGACCGCGGAGACCTTTGG
GTTCAAGCTCAACGCCAATGGCGCCAGTCTGAAGAAGAAGCAACTGTGGA
CGCTGGAACCCTCGAACACCGGTGAAAGTATTATCTACTTACGATCTCAT
CTGAACAAGTACCTTTCGGTCGATCAGTTTGGCAACGTGCTGTGCGAGAG
CGATGAGAGGGACGCGGGCAGCCGCTTCCAGATCAGCATCAGTGAGGACG
GCAGCGGACGTTGGGCGCTGAAGAACGAGTCGCGCCGGCTACTTTCTGGG
CGGCACTCCGGACAAACTGGTCTGCACGGCCAAGACGCCCCGGCGCCAGT
GAGTTTTGGACGGTCCATTTGGCTGCCCGGCCGCAGGTGAATCTGCGCT
BO14010.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32858-PC | 1695 | sn-RC | 1..519 | 17..535 | 2595 | 100 | Plus |
| CG32858-PA | 1539 | sn-RA | 1..363 | 173..535 | 1815 | 100 | Plus |
| CG32858-PB | 1539 | sn-RB | 1..363 | 173..535 | 1815 | 100 | Plus |
| CG32858-PC | 1695 | sn-RC | 571..631 | 589..649 | 305 | 100 | Plus |
| CG32858-PA | 1539 | sn-RA | 415..475 | 589..649 | 305 | 100 | Plus |
| CG32858-PB | 1539 | sn-RB | 415..475 | 589..649 | 305 | 100 | Plus |
| CG32858-PC | 1695 | sn-RC | 519..573 | 536..590 | 275 | 100 | Plus |
| CG32858-PA | 1539 | sn-RA | 363..417 | 536..590 | 275 | 100 | Plus |
| CG32858-PB | 1539 | sn-RB | 363..417 | 536..590 | 275 | 100 | Plus |
| CG2212-PA | 4278 | sws-RA | 831..884 | 70..17 | 270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sn-RG | 2322 | CG32858-RG | 70..700 | 17..649 | 3115 | 99.7 | Plus |
| sn-RB | 3358 | CG32858-RB | 668..1220 | 95..649 | 2725 | 99.6 | Plus |
| sn-RA | 3101 | CG32858-RA | 411..963 | 95..649 | 2725 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7982371..7982653 | 97..379 | 1415 | 100 | Plus |
| X | 23542271 | X | 7983988..7984257 | 378..649 | 1260 | 99.3 | Plus |
| X | 23542271 | X | 7964093..7964172 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 08:30:38 has no hits.
BO14010.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:17:00 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:31 Download gff for
BO14010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32858-PC | 1..631 | 17..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:48:41 Download gff for
BO14010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sn-RG | 70..700 | 17..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:21:12 Download gff for
BO14010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sn-RG | 70..700 | 17..649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:21:12 Download gff for
BO14010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7964093..7964172 | 17..96 | 100 | -> | Plus |
| X | 7982371..7982651 | 97..377 | 100 | -> | Plus |
| X | 7983988..7984257 | 378..649 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:48:41 Download gff for
BO14010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7858126..7858205 | 17..96 | 100 | -> | Plus |
| arm_X | 7876404..7876684 | 97..377 | 100 | -> | Plus |
| arm_X | 7878021..7878290 | 378..649 | 99 | | Plus |
BO14010.complete Sequence
1726 bp assembled on 2008-08-14
GenBank Submission: FJ632993
> BO14010.complete
GAAGTTATCAGTCGACATGACGCGAATCATTACGTCCGGATTGTCCTGGA
ACACCTCTTCGAATGCCTGCCAAAGCAAGGAGGAAAAAAATAAGAACACC
ATTAAGTTCGATCTTCCTTACGCAAAGAAGCCGGATTCCGGAGACAGCCT
CAAGATTGCTCCCATCAGCACCATGAACGGCCAGGGCTGCGAGCTGGGCC
ACAGCAATGGCGACATCATCTCACAGAATCAACAGAAGGGATGGTGGACC
ATCGGCCTGATCAACGGCCAGCACAAGTACATGACCGCGGAGACCTTTGG
GTTCAAGCTCAACGCCAATGGCGCCAGTCTGAAGAAGAAGCAACTGTGGA
CGCTGGAACCCTCGAACACCGGTGAAAGTATTATCTACTTACGATCTCAT
CTGAACAAGTACCTTTCGGTCGATCAGTTTGGCAACGTGCTGTGCGAGAG
CGATGAGAGGGACGCGGGCAGCCGCTTCCAGATCAGCATCAGTGAGGACG
GCAGCGGACGTTGGGCGCTGAAGAACGAGTCGCGCGGCTACTTTCTGGGC
GGCACTCCGGACAAACTGGTCTGCACGGCCAAGACGCCCGGCGCCAGTGA
GTTTTGGACGGTCCATTTGGCTGCCCGGCCGCAGGTGAATCTGCGCTCCA
TCGGACGCAAGCGATTCGCCCATTTGTCGGAGTCGCAGGACGAGATCCAT
GTGGACGCCAATATTCCTTGGGGCGAGGATACGCTCTTTACGCTGGAGTT
CCGTGCCGAGGAGGGCGGTCGCTATGCTCTGCATACGTGCAACAACAAAT
ATCTGAACGCCAATGGAAAATTGCAGGTGGTGTGCAACGAGGATTGCCTG
TTCAGTGCCGAATATCATGGTGGCCATCTGGCGCTGCGCGATCGTCAGGG
TCAGTACTTGTCGCCCATTGGCTCCAAGGCGGTGTTGAAGTCCCGCTCGT
CGTCAGTGACGCGGGATGAGCTCTTCTCGCTGGAGGATTCGCTGCCCCAG
GCTTCCTTTATAGCCGGACTCAATTTGCGATATGTGAGCGTTAAGCAGGG
CGTCGATGTGACGGCCAACCAGGACGAGGTCGGTGAGAACGAGACGTTCC
AGCTGGAGTACGATTGGTCGGCGCACCGTTGGGCCCTCCGCACCACCCAG
GATCGCTACTGGTGTCTGTCGGCGGGCGGTGGCATCCAGGCCACCGGCAA
TCGTCGCTGTGCCGACGCTCTCTTCGAGCTGATCTGGCACGGCGATGGCT
CGCTCTCGTTCCGGGCTAACAACGGCAAGTTCTTGGCCACCAAGCGCTCT
GGTCATCTGTTTGCCACCTCGGAGTCGATCGAGGAGATAGCCAAGTTCTA
TTTCTACTTGATTAATAGACCAATTCTTGTACTGAAGTGCGAGCAGGGAT
TCGTGGGCTATCGCACGCCCGGCAACCTGAAGCTCGAGTGCAATAAGGCC
ACCTATGAAACGATTCTGGTGGAGCGGGCCCAGAAGGGCCTGGTGCATCT
GAAGGCGCATAGCGGCAAATACTGGCGCATCGAGGGCGAAAGCATCTCGG
TGGATGCCGATGCGCCCAGCGATGGTTTCTTCCTCGAGCTTCGCGAGCCG
ACCAGGATCTGCATAAGATCGCAGCAGGGCAAGTACCTGGGCGCTACGAA
GAACGGGGCGTTCAAGCTGCTGGATGATGGAACCGATTCGGCCACACAGT
GGGAGTTCGCAAGCTTTCTAGACCAT
BO14010.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sn-RG | 1539 | CG32858-PG | 1..1536 | 173..1708 | 7680 | 100 | Plus |
| sn-RE | 1539 | CG32858-PE | 1..1536 | 173..1708 | 7680 | 100 | Plus |
| sn-RB | 1539 | CG32858-PB | 1..1536 | 173..1708 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sn-RG | 2322 | CG32858-RG | 70..1761 | 17..1708 | 8460 | 100 | Plus |
| sn-RB | 3358 | CG32858-RB | 668..2281 | 95..1708 | 8070 | 100 | Plus |
| sn-RA | 3101 | CG32858-RA | 411..2024 | 95..1708 | 8070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7984470..7985039 | 799..1368 | 2850 | 100 | Plus |
| X | 23542271 | X | 7983988..7984408 | 378..798 | 2105 | 100 | Plus |
| X | 23542271 | X | 7982371..7982653 | 97..379 | 1415 | 100 | Plus |
| X | 23542271 | X | 7985100..7985356 | 1361..1617 | 1270 | 99.6 | Plus |
| X | 23542271 | X | 7985432..7985524 | 1616..1708 | 465 | 100 | Plus |
| X | 23542271 | X | 7964093..7964172 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:15:17 has no hits.
BO14010.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:26 Download gff for
BO14010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sn-RC | 70..1761 | 17..1708 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:58 Download gff for
BO14010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sn-RG | 70..1761 | 17..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:10 Download gff for
BO14010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sn-RC | 70..1761 | 17..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:00 Download gff for
BO14010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sn-RG | 70..1761 | 17..1710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:00 Download gff for
BO14010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7982371..7982651 | 97..377 | 100 | -> | Plus |
| X | 7964093..7964172 | 17..96 | 100 | -> | Plus |
| X | 7983988..7984408 | 378..798 | 100 | -> | Plus |
| X | 7984470..7985039 | 799..1368 | 100 | -> | Plus |
| X | 7985108..7985356 | 1369..1617 | 100 | -> | Plus |
| X | 7985434..7985524 | 1618..1710 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:58 Download gff for
BO14010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7858126..7858205 | 17..96 | 100 | -> | Plus |
| arm_X | 7876404..7876684 | 97..377 | 100 | -> | Plus |
| arm_X | 7878021..7878441 | 378..798 | 100 | -> | Plus |
| arm_X | 7878503..7879072 | 799..1368 | 100 | -> | Plus |
| arm_X | 7879141..7879389 | 1369..1617 | 100 | -> | Plus |
| arm_X | 7879467..7879557 | 1618..1710 | 97 | | Plus |
BO14010.pep Sequence
Translation from 16 to 1726
> BO14010.pep
MTRIITSGLSWNTSSNACQSKEEKNKNTIKFDLPYAKKPDSGDSLKIAPI
STMNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNA
NGASLKKKQLWTLEPSNTGESIIYLRSHLNKYLSVDQFGNVLCESDERDA
GSRFQISISEDGSGRWALKNESRGYFLGGTPDKLVCTAKTPGASEFWTVH
LAARPQVNLRSIGRKRFAHLSESQDEIHVDANIPWGEDTLFTLEFRAEEG
GRYALHTCNNKYLNANGKLQVVCNEDCLFSAEYHGGHLALRDRQGQYLSP
IGSKAVLKSRSSSVTRDELFSLEDSLPQASFIAGLNLRYVSVKQGVDVTA
NQDEVGENETFQLEYDWSAHRWALRTTQDRYWCLSAGGGIQATGNRRCAD
ALFELIWHGDGSLSFRANNGKFLATKRSGHLFATSESIEEIAKFYFYLIN
RPILVLKCEQGFVGYRTPGNLKLECNKATYETILVERAQKGLVHLKAHSG
KYWRIEGESISVDADAPSDGFFLELREPTRICIRSQQGKYLGATKNGAFK
LLDDGTDSATQWEFASFLDH
BO14010.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sn-PG | 512 | CG32858-PG | 1..512 | 53..564 | 2724 | 100 | Plus |
| sn-PE | 512 | CG32858-PE | 1..512 | 53..564 | 2724 | 100 | Plus |
| sn-PB | 512 | CG32858-PB | 1..512 | 53..564 | 2724 | 100 | Plus |
| sn-PA | 512 | CG32858-PA | 1..512 | 53..564 | 2724 | 100 | Plus |
