Clone BO14011 Report

Search the DGRC for BO14011

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG13108-RA
Protein status:BO14011.pep: validated full length
Sequenced Size:733

Clone Sequence Records

BO14011.3prime Sequence

677 bp (655 high quality bases) assembled on 2006-05-29

> BO14011.3prime
ATGGTCTAGAAAGCTTGCATTTTGCTTATCCTCCTCCGCCTCCAAAGTAT
CTTCTTTGTCCGATGTCGTTTTCTTATTTCGCTCTGATTGTAGTTCCACG
GAGATTTTCTTAATCGCCTCCAGATCGTGCAGTTTAATACGTCTGTTGTT
GGGATCCAAGCAGTTGACTTTGACCTCTATGAAGTCGCTCGTCTGCTGAT
CATCCCAACTGGAATATACAGAACTGGAGGTAAAGAGCAGCTCCTCCTCC
TCGGCAGCCGACTTGACCCGCAGATACTTCTGAAGCAGATTCGTTTGTTC
ATCTTTGCGCCACAGACACAAGCGATTGTTCTTTAGCCAGTCGTTTTCCA
TAAGATCAGACTTTTTTACCAGCAAATCCAGTTGGCTTAACTTAACAAAT
TGCTTCTTGGGCGGCAGACTCTGGGGTCGCTTTGAAGTGCTGGCCGACGG
GTAGTCAAAGTCGTCGTCGCTGGGATCGGTTTCTAGGTCATCCTCTTCGT
CGGACTCCTCGTCGCTCACCTTGGCCATCCGGCGCTTGGCCTTCGAGGCA
TTGGCTGCCGCCGATTTCCGCTTCCTGCCGCCATCGGAGCCAGATGGCTT
GGACGGACGTTTCTTGGTGGGTCGCCAGTCCTCCTCGGAGTCGGAATCGT
CCGGACTGAAATCATCCTCGTCGCTCT

BO14011.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13108-PA 702 CG13108-RA 41..699 677..19 3295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13108-RA 1021 CG13108-RA 154..812 677..19 3295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9164388..9164848 677..217 2305 100 Minus
2L 23513712 2L 9165020..9165217 216..19 990 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:50:17 has no hits.

BO14011.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:01 Download gff for BO14011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13108-PA 41..702 15..677 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:33 Download gff for BO14011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13108-PA 41..702 15..677 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:49:02 Download gff for BO14011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13108-RA 154..824 8..677 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:39:02 Download gff for BO14011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13108-RA 154..824 8..677 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:39:02 Download gff for BO14011.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9164388..9164848 217..677 100 -> Minus
2L 9165020..9165229 8..216 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:49:02 Download gff for BO14011.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9164388..9164848 217..677 100 -> Minus
arm_2L 9165020..9165229 8..216 98   Minus

BO14011.5prime Sequence

683 bp (597 high quality bases) assembled on 2006-05-29

> BO14011.5prime
GAAGTTATCAGTCGACATGCGAAGTCGCACGGAACTGGTGACCACCACTT
TCGAGGAGAGCGACGAGGATGATTTCAGTCCGGACGATTCCGACTCCGAG
GAGGACTGGCGACCCACCAAGAAACGTCCGTCCAAGCCATCTGGCTCCGA
TGGCGGCAGGAAGCGGAAATCGGCGGCAGCCAATGCCTCGAAGGCCAAGC
GCCGGATGGCCAAGGTGAGCGACGAGGAGTCCGACGAAGAGGATGACCTA
GAAACCGATCCCAGCGACGACGACTTTGACTACCCGTCGGCCAGCACTTC
AAAGCGACCCCAGAGTCTGCCGCCCAAGAAGCAATTTGTTAAGTTAAGCC
AACTGGATTTGCTGGTAAAAAAGTCTGATCTTATGGAAAACGACTGGCTA
AAGAACAATCGCTTGTGTCTGTGGCGCAAAGATGAACAAACGAATCTGCT
TCAGAAGTATCTGCGGGTCAAGTCGGCTGCCGAGGAGGAGGAGCTGCTCT
TTACCTCCAGTTCTGTATATTCCAGTTGGGATGATCAGCAGACGAGCGAC
TTCATAGAGGTCAAAGTCAACTGCTTGGATCCCAACCACAGACGTATTAA
ACTGCACGATCTGGAGGCGATTAAGAAAATCTCCGTGGAACTACAATCAG
AGCGAAATAAGAAAACGACATCGGACAAAGAAG

BO14011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13108-PA 702 CG13108-RA 1..667 17..683 3310 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13108-RA 1021 CG13108-RA 114..780 17..683 3320 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9164348..9164848 17..517 2505 100 Plus
2L 23513712 2L 9165020..9165185 518..683 815 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 05:37:41 has no hits.

BO14011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:02 Download gff for BO14011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13108-PA 1..667 17..683 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:34 Download gff for BO14011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13108-PA 1..667 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:11 Download gff for BO14011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13108-RA 101..780 5..683 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:28 Download gff for BO14011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13108-RA 101..780 5..683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:28 Download gff for BO14011.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9164335..9164848 5..517 99 -> Plus
2L 9165020..9165185 518..683 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:11 Download gff for BO14011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9164335..9164848 5..517 99 -> Plus
arm_2L 9165020..9165185 518..683 99   Plus

BO14011.complete Sequence

733 bp assembled on 2006-10-11

GenBank Submission: FJ632994

> BO14011.complete
GAAGTTATCAGTCGACATGCGAAGTCGCACGGAACTGGTGACCACCACTT
TCGAGGAGAGCGACGAGGATGATTTCAGTCCGGACGATTCCGACTCCGAG
GAGGACTGGCGACCCACCAAGAAACGTCCGTCCAAGCCATCTGGCTCCGA
TGGCGGCAGGAAGCGGAAATCGGCGGCAGCCAATGCCTCGAAGGCCAAGC
GCCGGATGGCCAAGGTGAGCGACGAGGAGTCCGACGAAGAGGATGACCTA
GAAACCGATCCCAGCGACGACGACTTTGACTACCCGTCGGCCAGCACTTC
AAAGCGACCCCAGAGTCTGCCGCCCAAGAAGCAATTTGTTAAGTTAAGCC
AACTGGATTTGCTGGTAAAAAAGTCTGATCTTATGGAAAACGACTGGCTA
AAGAACAATCGCTTGTGTCTGTGGCGCAAAGATGAACAAACGAATCTGCT
TCAGAAGTATCTGCGGGTCAAGTCGGCTGCCGAGGAGGAGGAGCTGCTCT
TTACCTCCAGTTCTGTATATTCCAGTTGGGATGATCAGCAGACGAGCGAC
TTCATAGAGGTCAAAGTCAACTGCTTGGATCCCAACAACAGACGTATTAA
ACTGCACGATCTGGAGGCGATTAAGAAAATCTCCGTGGAACTACAATCAG
AGCGAAATAAGAAAACGACATCGGACAAAGAAGATACTTTGGAGGCGGAG
GAGGATAAGCAAAATGCAAGCTTTCTAGACCAT

BO14011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13108-RA 702 CG13108-PA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13108-RA 1021 CG13108-RA 114..812 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9164348..9164848 17..517 2505 100 Plus
2L 23513712 2L 9165020..9165217 518..715 990 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:45:43 has no hits.

BO14011.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:55 Download gff for BO14011.complete
Subject Subject Range Query Range Percent Splice Strand
CG13108-RA 1..702 17..719 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:51 Download gff for BO14011.complete
Subject Subject Range Query Range Percent Splice Strand
CG13108-RA 101..824 5..726 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:00 Download gff for BO14011.complete
Subject Subject Range Query Range Percent Splice Strand
CG13108-RA 114..812 17..717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:55 Download gff for BO14011.complete
Subject Subject Range Query Range Percent Splice Strand
CG13108-RA 101..824 5..726 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:11 Download gff for BO14011.complete
Subject Subject Range Query Range Percent Splice Strand
CG13108-RA 114..812 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:11 Download gff for BO14011.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9164348..9164848 17..517 100 -> Plus
2L 9165020..9165217 518..717 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:00 Download gff for BO14011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9164348..9164848 17..517 100 -> Plus
arm_2L 9165020..9165217 518..717 99   Plus

BO14011.pep Sequence

Translation from 16 to 733

> BO14011.pep
MRSRTELVTTTFEESDEDDFSPDDSDSEEDWRPTKKRPSKPSGSDGGRKR
KSAAANASKAKRRMAKVSDEESDEEDDLETDPSDDDFDYPSASTSKRPQS
LPPKKQFVKLSQLDLLVKKSDLMENDWLKNNRLCLWRKDEQTNLLQKYLR
VKSAAEEEELLFTSSSVYSSWDDQQTSDFIEVKVNCLDPNNRRIKLHDLE
AIKKISVELQSERNKKTTSDKEDTLEAEEDKQNASFLDH

BO14011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13108-PA 233 CG13108-PA 1..233 1..233 1200 100 Plus