Clone Sequence Records
BO14011.3prime Sequence
677 bp (655 high quality bases) assembled on 2006-05-29
> BO14011.3prime
ATGGTCTAGAAAGCTTGCATTTTGCTTATCCTCCTCCGCCTCCAAAGTAT
CTTCTTTGTCCGATGTCGTTTTCTTATTTCGCTCTGATTGTAGTTCCACG
GAGATTTTCTTAATCGCCTCCAGATCGTGCAGTTTAATACGTCTGTTGTT
GGGATCCAAGCAGTTGACTTTGACCTCTATGAAGTCGCTCGTCTGCTGAT
CATCCCAACTGGAATATACAGAACTGGAGGTAAAGAGCAGCTCCTCCTCC
TCGGCAGCCGACTTGACCCGCAGATACTTCTGAAGCAGATTCGTTTGTTC
ATCTTTGCGCCACAGACACAAGCGATTGTTCTTTAGCCAGTCGTTTTCCA
TAAGATCAGACTTTTTTACCAGCAAATCCAGTTGGCTTAACTTAACAAAT
TGCTTCTTGGGCGGCAGACTCTGGGGTCGCTTTGAAGTGCTGGCCGACGG
GTAGTCAAAGTCGTCGTCGCTGGGATCGGTTTCTAGGTCATCCTCTTCGT
CGGACTCCTCGTCGCTCACCTTGGCCATCCGGCGCTTGGCCTTCGAGGCA
TTGGCTGCCGCCGATTTCCGCTTCCTGCCGCCATCGGAGCCAGATGGCTT
GGACGGACGTTTCTTGGTGGGTCGCCAGTCCTCCTCGGAGTCGGAATCGT
CCGGACTGAAATCATCCTCGTCGCTCT
BO14011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13108-PA | 702 | CG13108-RA | 41..699 | 677..19 | 3295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13108-RA | 1021 | CG13108-RA | 154..812 | 677..19 | 3295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9164388..9164848 | 677..217 | 2305 | 100 | Minus |
2L | 23513712 | 2L | 9165020..9165217 | 216..19 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:50:17 has no hits.
BO14011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:01 Download gff for
BO14011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-PA | 41..702 | 15..677 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:33 Download gff for
BO14011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-PA | 41..702 | 15..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:49:02 Download gff for
BO14011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-RA | 154..824 | 8..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:39:02 Download gff for
BO14011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-RA | 154..824 | 8..677 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:39:02 Download gff for
BO14011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9164388..9164848 | 217..677 | 100 | -> | Minus |
2L | 9165020..9165229 | 8..216 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:49:02 Download gff for
BO14011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9164388..9164848 | 217..677 | 100 | -> | Minus |
arm_2L | 9165020..9165229 | 8..216 | 98 | | Minus |
BO14011.5prime Sequence
683 bp (597 high quality bases) assembled on 2006-05-29
> BO14011.5prime
GAAGTTATCAGTCGACATGCGAAGTCGCACGGAACTGGTGACCACCACTT
TCGAGGAGAGCGACGAGGATGATTTCAGTCCGGACGATTCCGACTCCGAG
GAGGACTGGCGACCCACCAAGAAACGTCCGTCCAAGCCATCTGGCTCCGA
TGGCGGCAGGAAGCGGAAATCGGCGGCAGCCAATGCCTCGAAGGCCAAGC
GCCGGATGGCCAAGGTGAGCGACGAGGAGTCCGACGAAGAGGATGACCTA
GAAACCGATCCCAGCGACGACGACTTTGACTACCCGTCGGCCAGCACTTC
AAAGCGACCCCAGAGTCTGCCGCCCAAGAAGCAATTTGTTAAGTTAAGCC
AACTGGATTTGCTGGTAAAAAAGTCTGATCTTATGGAAAACGACTGGCTA
AAGAACAATCGCTTGTGTCTGTGGCGCAAAGATGAACAAACGAATCTGCT
TCAGAAGTATCTGCGGGTCAAGTCGGCTGCCGAGGAGGAGGAGCTGCTCT
TTACCTCCAGTTCTGTATATTCCAGTTGGGATGATCAGCAGACGAGCGAC
TTCATAGAGGTCAAAGTCAACTGCTTGGATCCCAACCACAGACGTATTAA
ACTGCACGATCTGGAGGCGATTAAGAAAATCTCCGTGGAACTACAATCAG
AGCGAAATAAGAAAACGACATCGGACAAAGAAG
BO14011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13108-PA | 702 | CG13108-RA | 1..667 | 17..683 | 3310 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13108-RA | 1021 | CG13108-RA | 114..780 | 17..683 | 3320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9164348..9164848 | 17..517 | 2505 | 100 | Plus |
2L | 23513712 | 2L | 9165020..9165185 | 518..683 | 815 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:37:41 has no hits.
BO14011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:02 Download gff for
BO14011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-PA | 1..667 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:34 Download gff for
BO14011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-PA | 1..667 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:11 Download gff for
BO14011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-RA | 101..780 | 5..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:28 Download gff for
BO14011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-RA | 101..780 | 5..683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:28 Download gff for
BO14011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9164335..9164848 | 5..517 | 99 | -> | Plus |
2L | 9165020..9165185 | 518..683 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:11 Download gff for
BO14011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9164335..9164848 | 5..517 | 99 | -> | Plus |
arm_2L | 9165020..9165185 | 518..683 | 99 | | Plus |
BO14011.complete Sequence
733 bp assembled on 2006-10-11
GenBank Submission: FJ632994
> BO14011.complete
GAAGTTATCAGTCGACATGCGAAGTCGCACGGAACTGGTGACCACCACTT
TCGAGGAGAGCGACGAGGATGATTTCAGTCCGGACGATTCCGACTCCGAG
GAGGACTGGCGACCCACCAAGAAACGTCCGTCCAAGCCATCTGGCTCCGA
TGGCGGCAGGAAGCGGAAATCGGCGGCAGCCAATGCCTCGAAGGCCAAGC
GCCGGATGGCCAAGGTGAGCGACGAGGAGTCCGACGAAGAGGATGACCTA
GAAACCGATCCCAGCGACGACGACTTTGACTACCCGTCGGCCAGCACTTC
AAAGCGACCCCAGAGTCTGCCGCCCAAGAAGCAATTTGTTAAGTTAAGCC
AACTGGATTTGCTGGTAAAAAAGTCTGATCTTATGGAAAACGACTGGCTA
AAGAACAATCGCTTGTGTCTGTGGCGCAAAGATGAACAAACGAATCTGCT
TCAGAAGTATCTGCGGGTCAAGTCGGCTGCCGAGGAGGAGGAGCTGCTCT
TTACCTCCAGTTCTGTATATTCCAGTTGGGATGATCAGCAGACGAGCGAC
TTCATAGAGGTCAAAGTCAACTGCTTGGATCCCAACAACAGACGTATTAA
ACTGCACGATCTGGAGGCGATTAAGAAAATCTCCGTGGAACTACAATCAG
AGCGAAATAAGAAAACGACATCGGACAAAGAAGATACTTTGGAGGCGGAG
GAGGATAAGCAAAATGCAAGCTTTCTAGACCAT
BO14011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13108-RA | 702 | CG13108-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13108-RA | 1021 | CG13108-RA | 114..812 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9164348..9164848 | 17..517 | 2505 | 100 | Plus |
2L | 23513712 | 2L | 9165020..9165217 | 518..715 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:45:43 has no hits.
BO14011.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:55 Download gff for
BO14011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-RA | 1..702 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:51 Download gff for
BO14011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-RA | 101..824 | 5..726 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:00 Download gff for
BO14011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-RA | 114..812 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:55 Download gff for
BO14011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-RA | 101..824 | 5..726 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:11 Download gff for
BO14011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13108-RA | 114..812 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:11 Download gff for
BO14011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9164348..9164848 | 17..517 | 100 | -> | Plus |
2L | 9165020..9165217 | 518..717 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:00 Download gff for
BO14011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9164348..9164848 | 17..517 | 100 | -> | Plus |
arm_2L | 9165020..9165217 | 518..717 | 99 | | Plus |
BO14011.pep Sequence
Translation from 16 to 733
> BO14011.pep
MRSRTELVTTTFEESDEDDFSPDDSDSEEDWRPTKKRPSKPSGSDGGRKR
KSAAANASKAKRRMAKVSDEESDEEDDLETDPSDDDFDYPSASTSKRPQS
LPPKKQFVKLSQLDLLVKKSDLMENDWLKNNRLCLWRKDEQTNLLQKYLR
VKSAAEEEELLFTSSSVYSSWDDQQTSDFIEVKVNCLDPNNRRIKLHDLE
AIKKISVELQSERNKKTTSDKEDTLEAEEDKQNASFLDH
BO14011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13108-PA | 233 | CG13108-PA | 1..233 | 1..233 | 1200 | 100 | Plus |