Clone Sequence Records
BO14012.complete Sequence
1588 bp assembled on 2010-04-13
GenBank Submission: KX799214
> BO14012.complete
GAAGTTATCAGTCGACATGGACTTGGACGATGTGGCTAGTCATCACGGAT
TCGGTCAACATATGGCCACGTACAATGTAGAGACCTCGGCGGTGCACAGG
AAACTTCAAAGCAAGGTGGAGGCACTTCGAATCCTGCGCCAGGAGCTGGA
ACAGTTTCGCGTGGAGCGAGACCAGTACAAGCTGGTGGCGGAGACCCTGC
AGCTGCGCTACTCCGCGCTGAAGAGTAATAGCGAACTTCTGGCTGTCGGT
GGATGTGGAGCCCTCAGCGAGAACTCCAGCCTGGCAGCCCTGCTCCACGA
GACGCGCGAGCAGAACCTAAAGCTCAGCACCGAAGTGGAAGCCCTGAGGC
AGCGGCTCAACGAGCTGCATGGCGACATGGAACTACTCCGGGAGACGGAG
GCCAGCAACAAGTCGCGGGTACAGGCAATGGCCAGCGAGAATGCCGCTCG
CAACAAGGAGGAGCTGCAGTGGCGTCGTGAGCGGGCAAACTTTATCTGCC
ACCTGGAGGGCCTCAAAAAAAGGAATGCCCAGCTGGCCTTCGACCTGAAG
GCGGTGATCGATGAGAAGGAGGAGCTGATAACCGAGCGGGATGCCTACAA
GTGCAAGGCACACCGCCTAAATCATGAACTCTTTGTGGCCCTCAGGGCGA
AGAAAACGCATCCAAGGCTCCTGGACATCGATGGTGTTTTGCTGGAGAAC
AAGTACCTGCATGAACGTGTGAAGATCCAAGACAGCGAACTGGAGCTCAC
CAAACAGAGCATCAATAAGTACAAGACAATGTTGGATGCAAAACGAAAGA
AGGGAATTGTAAAACTTGGCGGTGGGAGCACAAATGAGGACACCATTCTA
AGCCCCCGGCAAGTGAAAACAATCCTCGAGAGTGGCATTGAGCTGCCTCA
GAAAACCGAGAGCTTAAGCGATCTAAAATCCTTGTGTCTGGCCCTGCTGG
ACAATCTCAACGACAAGAACTTGGCCCTGACGCACCAAAAGAAGACCAAC
AAAATACTGGCTGGCAAAATGACGGAGCTGGAGCAGCGGTGGCAACAACT
CCTCTCCGGAAACGATGACAACGCAGAGGAGCAGGAGGAGGACGTGGAAT
ATGGTTATGCGCCTTCGCAGCTGCTCCTCAATGGCTATTGTGCCGCCATG
GTAGATGACGCCGACATCAGCAGCACTCCGTCCATTGAGCCAGATAACGA
AGGCGTCGCCATTACAGCGGATCATGAAGATTCAAAGAAGCACAAGTCCG
TTGAGGCTCTGCATTCCGACGATGGAATGTCCTCGCTTTCAACGGAGTCC
GTGGATTCGTCTGTGTACGGTGCAGATGTGCAGCCCGATGACTTCCAAAA
GTCTTCATCCGCCACAACAGATTCGGGCAACTGTGGATTGAGCAGCCGCT
GCAACGGCACGCCACGAATATCCAGTGCAGTGGCACGGGAACGTATGGAG
GATCTGAAGGACCTGCCGCCTCACCTGGCCACTCTGGTCCAGAAAGCACT
TCACGATCTGGACATGCGGGACTACGAGGCTATGGTGACGATACGAGCAG
AGAATCTGGCGGCTATTCCTGCAAGCTTTCTAGACCAT
BO14012.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14868-RA | 1557 | CG14868-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14868-RA | 1844 | CG14868-RA | 163..1721 | 12..1570 | 7780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15369066..15369652 | 667..81 | 2935 | 100 | Minus |
| 3R | 32079331 | 3R | 15367939..15368506 | 1570..1003 | 2840 | 100 | Minus |
| 3R | 32079331 | 3R | 15368563..15368703 | 1002..862 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 15368906..15369014 | 775..667 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 15368760..15368849 | 863..774 | 450 | 100 | Minus |
| 3R | 32079331 | 3R | 15369713..15369783 | 82..12 | 340 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:30:53 has no hits.
BO14012.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:53 Download gff for
BO14012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14868-RA | 157..1710 | 17..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:37 Download gff for
BO14012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14868-RA | 168..1721 | 17..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:48 Download gff for
BO14012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14868-RA | 168..1721 | 17..1572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:48 Download gff for
BO14012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15367937..15368506 | 1003..1572 | 99 | <- | Minus |
| 3R | 15368563..15368701 | 864..1002 | 100 | <- | Minus |
| 3R | 15368760..15368847 | 776..863 | 100 | <- | Minus |
| 3R | 15368906..15369013 | 668..775 | 100 | <- | Minus |
| 3R | 15369066..15369650 | 83..667 | 100 | <- | Minus |
| 3R | 15369713..15369778 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:37 Download gff for
BO14012.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11193659..11194228 | 1003..1572 | 99 | <- | Minus |
| arm_3R | 11194285..11194423 | 864..1002 | 100 | <- | Minus |
| arm_3R | 11194482..11194569 | 776..863 | 100 | <- | Minus |
| arm_3R | 11194628..11194735 | 668..775 | 100 | <- | Minus |
| arm_3R | 11194788..11195372 | 83..667 | 100 | <- | Minus |
| arm_3R | 11195435..11195500 | 17..82 | 100 | | Minus |
BO14012.3prime Sequence
573 bp (571 high quality bases) assembled on 2006-05-29
> BO14012.3prime
ATGGTCTAGAAAGCTTGCAGGAATAGCCGCCAGATTCTCTGCTCGTATCG
TCACCATAGCCTCGTAGTCCCGCATGTCCAGATCGTGAAGTGCTTTCTGG
ACCAGAGTGGCCAGGTGAGGCGGCAGGTCCTTCAGATCCTCCATACGTTC
CCGTGCCACTGCACTGGATATTCGTGGCGTGCCGTTGCAGCGGCTGCTCA
ATCCACAGTTGCCCGAATCTGTTGTGGCGGATGAAGACTTTTGGAAGTCA
TCGGGCTGCACATCTGCACCGTACACAGACGAATCCACGGACTCCGTTGA
AAGCGAGGACATTCCATCGTCGGAATGCAGAGCCTCAACGGACTTGTGCT
TCTTTGAATCTTCATGATCCGCTGTAATGGCGACGCCTTCGTTATCTGGC
TCAATGGACGGAGTGCTGCTGATGTCGGCGTCATCTACCATGGCGGCACA
ATAGCCATTGAGGAGCAGCTGCGAAGGCGCATAACCATATTCCACGTCCT
CCTCCTGCTCCTCTGCGTTGTCATCGTTTCCGGAGAGGAGTTGTTGCCAC
CGCTGCTCCCGCTCCGTCATTTT
BO14012.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14868-PA | 1557 | CG14868-RA | 1000..1554 | 573..19 | 2750 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14868-RA | 1844 | CG14868-RA | 1167..1721 | 573..19 | 2760 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15367939..15368493 | 19..573 | 2760 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:18:31 has no hits.
BO14012.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:03 Download gff for
BO14012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14868-PA | 1000..1557 | 18..573 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:35 Download gff for
BO14012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14868-PA | 1000..1557 | 18..573 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:14 Download gff for
BO14012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14868-RA | 1167..1721 | 19..573 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:20:29 Download gff for
BO14012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14868-RA | 1167..1721 | 19..573 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:20:29 Download gff for
BO14012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15367939..15368493 | 19..573 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:14 Download gff for
BO14012.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11193661..11194215 | 19..573 | 99 | | Plus |
BO14012.pep Sequence
Translation from 16 to 1588
> BO14012.pep
MDLDDVASHHGFGQHMATYNVETSAVHRKLQSKVEALRILRQELEQFRVE
RDQYKLVAETLQLRYSALKSNSELLAVGGCGALSENSSLAALLHETREQN
LKLSTEVEALRQRLNELHGDMELLRETEASNKSRVQAMASENAARNKEEL
QWRRERANFICHLEGLKKRNAQLAFDLKAVIDEKEELITERDAYKCKAHR
LNHELFVALRAKKTHPRLLDIDGVLLENKYLHERVKIQDSELELTKQSIN
KYKTMLDAKRKKGIVKLGGGSTNEDTILSPRQVKTILESGIELPQKTESL
SDLKSLCLALLDNLNDKNLALTHQKKTNKILAGKMTELEQRWQQLLSGND
DNAEEQEEDVEYGYAPSQLLLNGYCAAMVDDADISSTPSIEPDNEGVAIT
ADHEDSKKHKSVEALHSDDGMSSLSTESVDSSVYGADVQPDDFQKSSSAT
TDSGNCGLSSRCNGTPRISSAVARERMEDLKDLPPHLATLVQKALHDLDM
RDYEAMVTIRAENLAAIPASFLDH
BO14012.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14868-PA | 518 | CG14868-PA | 1..518 | 1..518 | 2615 | 100 | Plus |
