Clone Sequence Records
BO14013.3prime Sequence
620 bp (619 high quality bases) assembled on 2006-05-29
> BO14013.3prime
ATGGTCTAGAAAGCTTGCTGTACAAGGCAGAACCGCGGAGTTCGACTGCT
CCTCGTGGTGCGTCTTCATGTACGCCAGGAAAATTGTCCACATCAGGCTG
CAAATGCTTACAAACACCACGCGGTTGTGTTCCGGCACCAGCGAGAAGTT
AATGGTCTGCAGGATAGGCCAGATGCATACGCCGACCTTGTACGTGGGCG
CCGCCTTCTCCTTCGTCTCTTCCACGGCCTGACTAAAGGTCTTCAGCTCC
AGCAAGCTCATTCCCATGAAAAAGCTTACGCAAGCGAATGGTCCGTAGGA
AAGCTGTTCCGTGATGGCCTTAACGATGCCCGTGCGCAGATTAGTCTGCG
GCCACATGGCGCTGGTGAGCCGCACCCAGCCGTACAGAGTGGGCGCCACG
TACAGAGCTCCAAACAAGCTGAAACGTAACGCCCTGGCCCAGTCGTACTC
GCGCAGCTTGCGTCCCTCCATAGCCTGCTGGATCAGGCTGCCCGCCGGCC
ACATGACCGCGTACGTGAGCGCGCCCTTGGCCATGGGATGCAGCTTGCTC
CCTCGACGCCACTGGCCCAGCGAGGCCTGCAACAGCTTGACGGCCGCAGG
CACCATGTCGACTGATAACT
BO14013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-PB | 591 | CG14777-RB | 1..588 | 606..19 | 2915 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-RF | 1474 | CG14777-RF | 809..1396 | 606..19 | 2925 | 99.8 | Minus |
CG14777-RC | 799 | CG14777-RC | 134..721 | 606..19 | 2925 | 99.8 | Minus |
CG14777-RE | 855 | CG14777-RE | 190..777 | 606..19 | 2925 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1468445..1468614 | 188..19 | 835 | 99.4 | Minus |
X | 23542271 | X | 1467811..1467965 | 606..452 | 775 | 100 | Minus |
X | 23542271 | X | 1468249..1468384 | 320..185 | 680 | 100 | Minus |
X | 23542271 | X | 1468052..1468186 | 452..318 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:08:21 has no hits.
BO14013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:04 Download gff for
BO14013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-PB | 1..591 | 18..606 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:36 Download gff for
BO14013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-PB | 1..591 | 18..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:36:24 Download gff for
BO14013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RD | 233..832 | 11..616 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:23 Download gff for
BO14013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RE | 183..782 | 11..616 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:23 Download gff for
BO14013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1467804..1467964 | 453..616 | 97 | -> | Minus |
X | 1468052..1468185 | 319..452 | 100 | -> | Minus |
X | 1468251..1468382 | 187..318 | 100 | -> | Minus |
X | 1468447..1468609 | 24..186 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:36:24 Download gff for
BO14013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1361837..1361997 | 453..616 | 97 | -> | Minus |
arm_X | 1362085..1362218 | 319..452 | 100 | -> | Minus |
arm_X | 1362284..1362415 | 187..318 | 100 | -> | Minus |
arm_X | 1362480..1362642 | 24..186 | 99 | -> | Minus |
BO14013.5prime Sequence
620 bp (619 high quality bases) assembled on 2006-05-29
> BO14013.5prime
GAAGTTATCAGTCGACATGGTGCCTGCGGCCGTCAAGCTGTTGCAGGCCT
CGCTGGGCCAGTGGCGTCGAGGGAGCAAGCTGCATCCCATGGCCAAGGGC
GCGCTCACGTACGCGGTCATGTGGCCGGCGGGCAGCCTGATCCAGCAGGC
TATGGAGGGACGCAAGCTGCGCGAGTACGACTGGGCCAGGGCGTTACGTT
TCAGCTTGTTTGGAGCTCTGTACGTGGCGCCCACTCTGTACGGCTGGGTG
CGGCTCACCAGCGCCATGTGGCCGCAGACTAATCTGCGCACGGGCATCGT
TAAGGCCATCACGGAACAGCTTTCCTACGGACCATTCGCTTGCGTAAGCT
TTTTCATGGGAATGAGCTTGCTGGAGCTGAAGACCTTTAGTCAGGCCGTG
GAAGAGACGAAGGAGAAGGCGGCGCCCACGTACAAGGTCGGCGTATGCAT
CTGGCCTATCCTGCAGACCATTAACTTCTCGCTGGTGCCGGAACACAACC
GCGTGGTGTTTGTAAGCATTTGCAGCCTGATGTGGACAATTTTCCTGGCG
TACATGAAGACGCACCACGAGGAGCAGTCGAACTCCGCGGTTCTGCCTTG
TACAGCAAGCTTTCTAGACC
BO14013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-PB | 591 | CG14777-RB | 1..588 | 17..604 | 2915 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-RF | 1474 | CG14777-RF | 809..1396 | 17..604 | 2925 | 99.8 | Plus |
CG14777-RC | 799 | CG14777-RC | 134..721 | 17..604 | 2925 | 99.8 | Plus |
CG14777-RE | 855 | CG14777-RE | 190..777 | 17..604 | 2925 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1468445..1468614 | 435..604 | 835 | 99.4 | Plus |
X | 23542271 | X | 1467811..1467965 | 17..171 | 775 | 100 | Plus |
X | 23542271 | X | 1468249..1468384 | 303..438 | 680 | 100 | Plus |
X | 23542271 | X | 1468052..1468186 | 171..305 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:27:01 has no hits.
BO14013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:05 Download gff for
BO14013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-PB | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:38 Download gff for
BO14013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-PB | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:33 Download gff for
BO14013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RD | 233..832 | 7..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:02 Download gff for
BO14013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RE | 183..782 | 7..612 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:02 Download gff for
BO14013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1467804..1467964 | 7..170 | 97 | -> | Plus |
X | 1468052..1468185 | 171..304 | 100 | -> | Plus |
X | 1468251..1468382 | 305..436 | 100 | -> | Plus |
X | 1468447..1468609 | 437..599 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:33 Download gff for
BO14013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1361837..1361997 | 7..170 | 97 | -> | Plus |
arm_X | 1362085..1362218 | 171..304 | 100 | -> | Plus |
arm_X | 1362284..1362415 | 305..436 | 100 | -> | Plus |
arm_X | 1362480..1362642 | 437..599 | 99 | -> | Plus |
BO14013.complete Sequence
622 bp assembled on 2006-10-11
GenBank Submission: FJ632995
> BO14013.complete
GAAGTTATCAGTCGACATGGTGCCTGCGGCCGTCAAGCTGTTGCAGGCCT
CGCTGGGCCAGTGGCGTCGAGGGAGCAAGCTGCATCCCATGGCCAAGGGC
GCGCTCACGTACGCGGTCATGTGGCCGGCGGGCAGCCTGATCCAGCAGGC
TATGGAGGGACGCAAGCTGCGCGAGTACGACTGGGCCAGGGCGTTACGTT
TCAGCTTGTTTGGAGCTCTGTACGTGGCGCCCACTCTGTACGGCTGGGTG
CGGCTCACCAGCGCCATGTGGCCGCAGACTAATCTGCGCACGGGCATCGT
TAAGGCCATCACGGAACAGCTTTCCTACGGACCATTCGCTTGCGTAAGCT
TTTTCATGGGAATGAGCTTGCTGGAGCTGAAGACCTTTAGTCAGGCCGTG
GAAGAGACGAAGGAGAAGGCGGCGCCCACGTACAAGGTCGGCGTATGCAT
CTGGCCTATCCTGCAGACCATTAACTTCTCGCTGGTGCCGGAACACAACC
GCGTGGTGTTTGTAAGCATTTGCAGCCTGATGTGGACAATTTTCCTGGCG
TACATGAAGACGCACCACGAGGAGCAGTCGAACTCCGCGGTTCTGCCTTG
TACAGCAAGCTTTCTAGACCAT
BO14013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-RF | 591 | CG14777-PF | 1..588 | 17..604 | 2925 | 99.8 | Plus |
CG14777-RC | 591 | CG14777-PC | 1..588 | 17..604 | 2925 | 99.8 | Plus |
CG14777-RE | 591 | CG14777-PE | 1..588 | 17..604 | 2925 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-RF | 1474 | CG14777-RF | 809..1396 | 17..604 | 2925 | 99.8 | Plus |
CG14777-RC | 799 | CG14777-RC | 134..721 | 17..604 | 2925 | 99.8 | Plus |
CG14777-RE | 855 | CG14777-RE | 190..777 | 17..604 | 2925 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1468445..1468614 | 435..604 | 835 | 99.4 | Plus |
X | 23542271 | X | 1467811..1467965 | 17..171 | 775 | 100 | Plus |
X | 23542271 | X | 1468249..1468384 | 303..438 | 680 | 100 | Plus |
X | 23542271 | X | 1468052..1468186 | 171..305 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:43:51 has no hits.
BO14013.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:56 Download gff for
BO14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RB | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:53 Download gff for
BO14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RC | 127..726 | 7..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:02 Download gff for
BO14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RD | 240..827 | 17..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:56 Download gff for
BO14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RB | 183..782 | 7..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:27 Download gff for
BO14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14777-RE | 190..777 | 17..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:27 Download gff for
BO14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1467811..1467964 | 17..170 | 100 | -> | Plus |
X | 1468052..1468185 | 171..304 | 100 | -> | Plus |
X | 1468251..1468382 | 305..436 | 100 | -> | Plus |
X | 1468447..1468614 | 437..606 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:02 Download gff for
BO14013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1361844..1361997 | 17..170 | 100 | -> | Plus |
arm_X | 1362085..1362218 | 171..304 | 100 | -> | Plus |
arm_X | 1362284..1362415 | 305..436 | 100 | -> | Plus |
arm_X | 1362480..1362647 | 437..606 | 98 | | Plus |
BO14013.pep Sequence
Translation from 16 to 622
> BO14013.pep
MVPAAVKLLQASLGQWRRGSKLHPMAKGALTYAVMWPAGSLIQQAMEGRK
LREYDWARALRFSLFGALYVAPTLYGWVRLTSAMWPQTNLRTGIVKAITE
QLSYGPFACVSFFMGMSLLELKTFSQAVEETKEKAAPTYKVGVCIWPILQ
TINFSLVPEHNRVVFVSICSLMWTIFLAYMKTHHEEQSNSAVLPCTASFL
DH
BO14013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14777-PF | 196 | CG14777-PF | 1..196 | 1..196 | 1030 | 100 | Plus |
CG14777-PC | 196 | CG14777-PC | 1..196 | 1..196 | 1030 | 100 | Plus |
CG14777-PE | 196 | CG14777-PE | 1..196 | 1..196 | 1030 | 100 | Plus |
CG14777-PD | 196 | CG14777-PD | 1..196 | 1..196 | 1030 | 100 | Plus |
CG14777-PB | 196 | CG14777-PB | 1..196 | 1..196 | 1030 | 100 | Plus |