Clone Sequence Records
BO14014.3prime Sequence
586 bp (571 high quality bases) assembled on 2006-05-29
> BO14014.3prime
ATGGTCTAGAAAGCTTGCCTGCTCGCCAGTCACGCCCAGCTTCTTCTTCA
GGGACTCGGGCATTTCTGGTGGTGGTGGGCGTGGCATGCGCAGGAACACC
TTGACGGCATCGTAGATGAACCACTGGGCGGCGGTCAATGTGCCGATCAT
CACGATCCTGGGCACCAAACCGCCCCACAATCCAGACCAACCCAGCTGCT
TGGCCACGTCCAGGGCGGAGGCACCCTTGGCCTGGTTCAGCTTGGACACC
ACTGTGTCCGCCGGATGCGAGACGATGGCGCAGAACACGCCGGCAATGTA
ACCGGCGGCGAAGGTCACCACCAACTGCTCACCCTTGGTGCAATCGGCAC
GTGGCTTGGGCACCACATACTTGTACAGCAGCTCCAGCGTCCGCTCGAAG
CAGGCGAACTTCATCATGGTGTATGGGATCTGGCGCATCCACAATGGCAC
CAGGCCCTTGTAGAAGGCGGTCACGCCCTCCTGGGCGGTCATTCTTGGGC
AGAGCCTCGCGCAATGTCTTGGCGAATCCGGGCGTGGTCTGGATCTTGAC
CTTGGCCGCCTCCATGGGCGCCAGGGCGATATCGGC
BO14014.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-PA | 1125 | CG9090-RA | 649..1122 | 492..19 | 2370 | 100 | Minus |
CG9090-PA | 1125 | CG9090-RA | 556..649 | 586..493 | 470 | 100 | Minus |
CG4994-PA | 1071 | Mpcp-RA | 634..821 | 468..281 | 440 | 89.3 | Minus |
CG4994-PB | 1071 | Mpcp-RB | 634..821 | 468..281 | 440 | 89.3 | Minus |
CG4994-PA | 1071 | Mpcp-RA | 850..878 | 252..224 | 145 | 100 | Minus |
CG4994-PB | 1071 | Mpcp-RB | 850..878 | 252..224 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-RC | 1265 | CG9090-RC | 594..1160 | 586..19 | 2815 | 99.8 | Minus |
CG9090-RB | 1339 | CG9090-RB | 668..1234 | 586..19 | 2815 | 99.8 | Minus |
CG9090-RA | 1385 | CG9090-RA | 714..1280 | 586..19 | 2815 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20279400..20279803 | 182..586 | 1975 | 99.8 | Plus |
2R | 25286936 | 2R | 20279171..20279335 | 19..183 | 825 | 100 | Plus |
3L | 28110227 | 3L | 14539553..14539864 | 370..59 | 570 | 78.8 | Minus |
3L | 28110227 | 3L | 14538855..14539072 | 586..368 | 505 | 83.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:08:28 has no hits.
BO14014.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:05 Download gff for
BO14014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-PA | 556..1125 | 15..586 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:39 Download gff for
BO14014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-PA | 556..1125 | 15..586 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:11:22 Download gff for
BO14014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 714..1283 | 15..586 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:04:59 Download gff for
BO14014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 714..1283 | 15..586 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:04:59 Download gff for
BO14014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20279167..20279334 | 15..182 | 98 | <- | Plus |
2R | 20279401..20279803 | 183..586 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:11:22 Download gff for
BO14014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16166672..16166839 | 15..182 | 98 | <- | Plus |
arm_2R | 16166906..16167308 | 183..586 | 99 | | Plus |
BO14014.5prime Sequence
690 bp (545 high quality bases) assembled on 2006-05-29
> BO14014.5prime
GAAGTTATCAGTCGACATGTTTAAGTCCCTGTTCGATGCCGCGCAGAACT
CAACGTTCAAGTCGCCATTCACTAGCGTCAACTGCCAGTCAGCCACGCCC
ACTTCCGCCCCCACATCCACCGCGGTGGTGACCCCCACCCTCAAGGATGT
TGCTCCACGCCAGCTGACTCGAAACCACAACATCGCTGCCGCTGCCGTTG
CCGAGGGTGACTCCTGCGAATTCGGCTCGAACCACTACTTCCTGCTGTGC
GGCCTGGGCGGCATCATCTCGTGCGGCTCCACACACACCATGGTGGTGCC
CCTGGATTTGGTCAAGTGCCGCCTGCAGGTGGACCCGGCCAAGTACAAGA
GCGTGTTCACCGGCTTCCGCATCAGCTTGGCTGAGGAGGGCGTCCGCGGA
TTGGCCAAGGGATGGGCACCCACCTTCATCGGCTACTCGATGCAGGGTCT
GTGCAAGTTCGGCCTGTACGAGGTCTTCAAGAAGGTGTACGGCGATGCTA
TCGGCGAGGAGAACGCATTCCTCTACAGAACCGGACTCTATTTGGCTGCA
TCGGCATCCGCTGAGTTCTTCGCCGATATCGCCCTGGCGCCCATGGAGGC
GGCCAAGGTCAAGATCCAGACCACGCCCGGATTCGCCAAGACATTGCGCG
AGGCTCTGCCCAAGATGACCGCCCAGGAGGGCGTGACCGC
BO14014.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-PA | 1125 | CG9090-RA | 1..674 | 17..690 | 3370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-RC | 1265 | CG9090-RC | 38..712 | 16..690 | 3375 | 100 | Plus |
CG9090-RB | 1339 | CG9090-RB | 112..786 | 16..690 | 3375 | 100 | Plus |
CG9090-RA | 1385 | CG9090-RA | 158..832 | 16..690 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20279685..20280166 | 690..209 | 2410 | 100 | Minus |
2R | 25286936 | 2R | 20280235..20280428 | 209..16 | 970 | 100 | Minus |
3L | 28110227 | 3L | 14538726..14538950 | 443..667 | 450 | 80 | Plus |
3L | 28110227 | 3L | 14538191..14538415 | 215..439 | 300 | 75.6 | Plus |
Blast to na_te.dros performed 2015-02-11 11:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\mini-me | 4622 | Dpse\mini-me DPSEMINIME 4622bp | 300..323 | 92..115 | 111 | 95.8 | Plus |
BO14014.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:06 Download gff for
BO14014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-PA | 1..674 | 17..690 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:41 Download gff for
BO14014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-PA | 1..674 | 17..690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:40 Download gff for
BO14014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 152..832 | 10..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:35 Download gff for
BO14014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 152..832 | 10..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:35 Download gff for
BO14014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20280235..20280434 | 10..209 | 98 | | Minus |
2R | 20279685..20280165 | 210..690 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:40 Download gff for
BO14014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16167190..16167670 | 210..690 | 100 | <- | Minus |
arm_2R | 16167740..16167939 | 10..209 | 98 | | Minus |
BO14014.complete Sequence
1156 bp assembled on 2008-08-14
GenBank Submission: FJ632996
> BO14014.complete
GAAGTTATCAGTCGACATGTTTAAGTCCCTGTTCGATGCCGCGCAGAACT
CAACGTTCAAGTCGCCATTCACTAGCGTCAACTGCCAGTCAGCCACGCCC
ACTTCCGCCCCCACATCCACCGCGGTGGTGACCCCCACCCTCAAGGATGT
TGCTCCACGCCAGCTGACTCGAAACCACAACATCGCTGCCGCTGCCGTTG
CCGAGGGTGACTCCTGCGAATTCGGCTCGAACCACTACTTCCTGCTGTGC
GGCCTGGGCGGCATCATCTCGTGCGGCTCCACACACACCATGGTGGTGCC
CCTGGATTTGGTCAAGTGCCGCCTGCAGGTGGACCCGGCCAAGTACAAGA
GCGTGTTCACCGGCTTCCGCATCAGCTTGGCTGAGGAGGGCGTCCGCGGA
TTGGCCAAGGGATGGGCACCCACCTTCATCGGCTACTCGATGCAGGGTCT
GTGCAAGTTCGGCCTGTACGAGGTCTTCAAGAAGGTGTACGGCGATGCTA
TCGGCGAGGAGAACGCATTCCTCTACAGAACCGGACTCTATTTGGCTGCA
TCGGCATCCGCTGAGTTCTTCGCCGATATCGCCCTGGCGCCCATGGAGGC
GGCCAAGGTCAAGATCCAGACCACGCCCGGATTCGCCAAGACATTGCGCG
AGGCTCTGCCCAAGATGACCGCCCAGGAGGGCGTGACCGCCTTCTACAAG
GGCCTGGTGCCATTGTGGATGCGCCAGATCCCATACACCATGATGAAGTT
CGCCTGCTTCGAGCGGACGCTGGAGCTGCTGTACAAGTATGTGGTGCCCA
AGCCACGTGCCGATTGCACCAAGGGTGAGCAGTTGGTGGTGACCTTCGCC
GCCGGTTACATTGCCGGCGTGTTCTGCGCCATCGTCTCGCATCCGGCGGA
CACAGTGGTGTCCAAGCTGAACCAGGCCAAGGGTGCCTCCGCCCTGGACG
TGGCCAAGCAGCTGGGTTGGTCTGGATTGTGGGGCGGTTTGGTGCCCAGG
ATCGTGATGATCGGCACATTGACCGCCGCCCAGTGGTTCATCTACGATGC
CGTCAAGGTGTTCCTGCGCATGCCACGCCCACCACCACCAGAAATGCCCG
AGTCCCTGAAGAAGAAGCTGGGCGTGACTGGCGAGCAGGCAAGCTTTCTA
GACCAT
BO14014.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-RC | 1125 | CG9090-PC | 1..1122 | 17..1138 | 5610 | 100 | Plus |
CG9090-RB | 1125 | CG9090-PB | 1..1122 | 17..1138 | 5610 | 100 | Plus |
CG9090-RA | 1125 | CG9090-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-RC | 1265 | CG9090-RC | 38..1160 | 16..1138 | 5615 | 100 | Plus |
CG9090-RB | 1339 | CG9090-RB | 112..1234 | 16..1138 | 5615 | 100 | Plus |
CG9090-RA | 1385 | CG9090-RA | 158..1280 | 16..1138 | 5615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20279400..20280166 | 975..209 | 3835 | 100 | Minus |
2R | 25286936 | 2R | 20280235..20280428 | 209..16 | 970 | 100 | Minus |
2R | 25286936 | 2R | 20279171..20279335 | 1138..974 | 825 | 100 | Minus |
3L | 28110227 | 3L | 14538726..14539072 | 443..789 | 760 | 81.3 | Plus |
3L | 28110227 | 3L | 14539553..14539864 | 787..1098 | 570 | 78.8 | Plus |
3L | 28110227 | 3L | 14538191..14538415 | 215..439 | 300 | 75.6 | Plus |
Blast to na_te.dros performed 2014-11-27 15:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\mini-me | 4622 | Dpse\mini-me DPSEMINIME 4622bp | 300..323 | 92..115 | 111 | 95.8 | Plus |
BO14014.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:29 Download gff for
BO14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 149..1280 | 10..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:11 Download gff for
BO14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 165..1280 | 23..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:32 Download gff for
BO14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 162..1277 | 23..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:20 Download gff for
BO14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9090-RA | 165..1280 | 23..1140 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:20 Download gff for
BO14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20279169..20279334 | 975..1140 | 98 | <- | Minus |
2R | 20279401..20280165 | 210..974 | 100 | <- | Minus |
2R | 20280235..20280421 | 23..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:11 Download gff for
BO14014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16166674..16166839 | 975..1140 | 98 | <- | Minus |
arm_2R | 16166906..16167670 | 210..974 | 100 | <- | Minus |
arm_2R | 16167740..16167926 | 23..209 | 100 | | Minus |
BO14014.pep Sequence
Translation from 16 to 1156
> BO14014.pep
MFKSLFDAAQNSTFKSPFTSVNCQSATPTSAPTSTAVVTPTLKDVAPRQL
TRNHNIAAAAVAEGDSCEFGSNHYFLLCGLGGIISCGSTHTMVVPLDLVK
CRLQVDPAKYKSVFTGFRISLAEEGVRGLAKGWAPTFIGYSMQGLCKFGL
YEVFKKVYGDAIGEENAFLYRTGLYLAASASAEFFADIALAPMEAAKVKI
QTTPGFAKTLREALPKMTAQEGVTAFYKGLVPLWMRQIPYTMMKFACFER
TLELLYKYVVPKPRADCTKGEQLVVTFAAGYIAGVFCAIVSHPADTVVSK
LNQAKGASALDVAKQLGWSGLWGGLVPRIVMIGTLTAAQWFIYDAVKVFL
RMPRPPPPEMPESLKKKLGVTGEQASFLDH
BO14014.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9090-PC | 374 | CG9090-PC | 1..374 | 1..374 | 1947 | 100 | Plus |
CG9090-PB | 374 | CG9090-PB | 1..374 | 1..374 | 1947 | 100 | Plus |
CG9090-PA | 374 | CG9090-PA | 1..374 | 1..374 | 1947 | 100 | Plus |
Mpcp-PC | 356 | CG4994-PC | 1..354 | 1..367 | 1379 | 71.1 | Plus |
Mpcp-PB | 356 | CG4994-PB | 1..354 | 1..367 | 1379 | 71.1 | Plus |