Clone BO14014 Report

Search the DGRC for BO14014

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG9090-RA
Protein status:BO14014.pep: Imported from assembly
Sequenced Size:1156

Clone Sequence Records

BO14014.3prime Sequence

586 bp (571 high quality bases) assembled on 2006-05-29

> BO14014.3prime
ATGGTCTAGAAAGCTTGCCTGCTCGCCAGTCACGCCCAGCTTCTTCTTCA
GGGACTCGGGCATTTCTGGTGGTGGTGGGCGTGGCATGCGCAGGAACACC
TTGACGGCATCGTAGATGAACCACTGGGCGGCGGTCAATGTGCCGATCAT
CACGATCCTGGGCACCAAACCGCCCCACAATCCAGACCAACCCAGCTGCT
TGGCCACGTCCAGGGCGGAGGCACCCTTGGCCTGGTTCAGCTTGGACACC
ACTGTGTCCGCCGGATGCGAGACGATGGCGCAGAACACGCCGGCAATGTA
ACCGGCGGCGAAGGTCACCACCAACTGCTCACCCTTGGTGCAATCGGCAC
GTGGCTTGGGCACCACATACTTGTACAGCAGCTCCAGCGTCCGCTCGAAG
CAGGCGAACTTCATCATGGTGTATGGGATCTGGCGCATCCACAATGGCAC
CAGGCCCTTGTAGAAGGCGGTCACGCCCTCCTGGGCGGTCATTCTTGGGC
AGAGCCTCGCGCAATGTCTTGGCGAATCCGGGCGTGGTCTGGATCTTGAC
CTTGGCCGCCTCCATGGGCGCCAGGGCGATATCGGC

BO14014.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-PA 1125 CG9090-RA 649..1122 492..19 2370 100 Minus
CG9090-PA 1125 CG9090-RA 556..649 586..493 470 100 Minus
CG4994-PA 1071 Mpcp-RA 634..821 468..281 440 89.3 Minus
CG4994-PB 1071 Mpcp-RB 634..821 468..281 440 89.3 Minus
CG4994-PA 1071 Mpcp-RA 850..878 252..224 145 100 Minus
CG4994-PB 1071 Mpcp-RB 850..878 252..224 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-RC 1265 CG9090-RC 594..1160 586..19 2815 99.8 Minus
CG9090-RB 1339 CG9090-RB 668..1234 586..19 2815 99.8 Minus
CG9090-RA 1385 CG9090-RA 714..1280 586..19 2815 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20279400..20279803 182..586 1975 99.8 Plus
2R 25286936 2R 20279171..20279335 19..183 825 100 Plus
3L 28110227 3L 14539553..14539864 370..59 570 78.8 Minus
3L 28110227 3L 14538855..14539072 586..368 505 83.1 Minus
Blast to na_te.dros performed on 2015-02-12 12:08:28 has no hits.

BO14014.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:05 Download gff for BO14014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-PA 556..1125 15..586 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:39 Download gff for BO14014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-PA 556..1125 15..586 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:11:22 Download gff for BO14014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 714..1283 15..586 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:04:59 Download gff for BO14014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 714..1283 15..586 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:04:59 Download gff for BO14014.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20279167..20279334 15..182 98 <- Plus
2R 20279401..20279803 183..586 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:11:22 Download gff for BO14014.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16166672..16166839 15..182 98 <- Plus
arm_2R 16166906..16167308 183..586 99   Plus

BO14014.5prime Sequence

690 bp (545 high quality bases) assembled on 2006-05-29

> BO14014.5prime
GAAGTTATCAGTCGACATGTTTAAGTCCCTGTTCGATGCCGCGCAGAACT
CAACGTTCAAGTCGCCATTCACTAGCGTCAACTGCCAGTCAGCCACGCCC
ACTTCCGCCCCCACATCCACCGCGGTGGTGACCCCCACCCTCAAGGATGT
TGCTCCACGCCAGCTGACTCGAAACCACAACATCGCTGCCGCTGCCGTTG
CCGAGGGTGACTCCTGCGAATTCGGCTCGAACCACTACTTCCTGCTGTGC
GGCCTGGGCGGCATCATCTCGTGCGGCTCCACACACACCATGGTGGTGCC
CCTGGATTTGGTCAAGTGCCGCCTGCAGGTGGACCCGGCCAAGTACAAGA
GCGTGTTCACCGGCTTCCGCATCAGCTTGGCTGAGGAGGGCGTCCGCGGA
TTGGCCAAGGGATGGGCACCCACCTTCATCGGCTACTCGATGCAGGGTCT
GTGCAAGTTCGGCCTGTACGAGGTCTTCAAGAAGGTGTACGGCGATGCTA
TCGGCGAGGAGAACGCATTCCTCTACAGAACCGGACTCTATTTGGCTGCA
TCGGCATCCGCTGAGTTCTTCGCCGATATCGCCCTGGCGCCCATGGAGGC
GGCCAAGGTCAAGATCCAGACCACGCCCGGATTCGCCAAGACATTGCGCG
AGGCTCTGCCCAAGATGACCGCCCAGGAGGGCGTGACCGC

BO14014.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-PA 1125 CG9090-RA 1..674 17..690 3370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-RC 1265 CG9090-RC 38..712 16..690 3375 100 Plus
CG9090-RB 1339 CG9090-RB 112..786 16..690 3375 100 Plus
CG9090-RA 1385 CG9090-RA 158..832 16..690 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20279685..20280166 690..209 2410 100 Minus
2R 25286936 2R 20280235..20280428 209..16 970 100 Minus
3L 28110227 3L 14538726..14538950 443..667 450 80 Plus
3L 28110227 3L 14538191..14538415 215..439 300 75.6 Plus
Blast to na_te.dros performed 2015-02-11 11:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\mini-me 4622 Dpse\mini-me DPSEMINIME 4622bp 300..323 92..115 111 95.8 Plus

BO14014.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:06 Download gff for BO14014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-PA 1..674 17..690 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:41 Download gff for BO14014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-PA 1..674 17..690 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:40 Download gff for BO14014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 152..832 10..690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:35 Download gff for BO14014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 152..832 10..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:35 Download gff for BO14014.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20280235..20280434 10..209 98   Minus
2R 20279685..20280165 210..690 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:40 Download gff for BO14014.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16167190..16167670 210..690 100 <- Minus
arm_2R 16167740..16167939 10..209 98   Minus

BO14014.complete Sequence

1156 bp assembled on 2008-08-14

GenBank Submission: FJ632996

> BO14014.complete
GAAGTTATCAGTCGACATGTTTAAGTCCCTGTTCGATGCCGCGCAGAACT
CAACGTTCAAGTCGCCATTCACTAGCGTCAACTGCCAGTCAGCCACGCCC
ACTTCCGCCCCCACATCCACCGCGGTGGTGACCCCCACCCTCAAGGATGT
TGCTCCACGCCAGCTGACTCGAAACCACAACATCGCTGCCGCTGCCGTTG
CCGAGGGTGACTCCTGCGAATTCGGCTCGAACCACTACTTCCTGCTGTGC
GGCCTGGGCGGCATCATCTCGTGCGGCTCCACACACACCATGGTGGTGCC
CCTGGATTTGGTCAAGTGCCGCCTGCAGGTGGACCCGGCCAAGTACAAGA
GCGTGTTCACCGGCTTCCGCATCAGCTTGGCTGAGGAGGGCGTCCGCGGA
TTGGCCAAGGGATGGGCACCCACCTTCATCGGCTACTCGATGCAGGGTCT
GTGCAAGTTCGGCCTGTACGAGGTCTTCAAGAAGGTGTACGGCGATGCTA
TCGGCGAGGAGAACGCATTCCTCTACAGAACCGGACTCTATTTGGCTGCA
TCGGCATCCGCTGAGTTCTTCGCCGATATCGCCCTGGCGCCCATGGAGGC
GGCCAAGGTCAAGATCCAGACCACGCCCGGATTCGCCAAGACATTGCGCG
AGGCTCTGCCCAAGATGACCGCCCAGGAGGGCGTGACCGCCTTCTACAAG
GGCCTGGTGCCATTGTGGATGCGCCAGATCCCATACACCATGATGAAGTT
CGCCTGCTTCGAGCGGACGCTGGAGCTGCTGTACAAGTATGTGGTGCCCA
AGCCACGTGCCGATTGCACCAAGGGTGAGCAGTTGGTGGTGACCTTCGCC
GCCGGTTACATTGCCGGCGTGTTCTGCGCCATCGTCTCGCATCCGGCGGA
CACAGTGGTGTCCAAGCTGAACCAGGCCAAGGGTGCCTCCGCCCTGGACG
TGGCCAAGCAGCTGGGTTGGTCTGGATTGTGGGGCGGTTTGGTGCCCAGG
ATCGTGATGATCGGCACATTGACCGCCGCCCAGTGGTTCATCTACGATGC
CGTCAAGGTGTTCCTGCGCATGCCACGCCCACCACCACCAGAAATGCCCG
AGTCCCTGAAGAAGAAGCTGGGCGTGACTGGCGAGCAGGCAAGCTTTCTA
GACCAT

BO14014.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-RC 1125 CG9090-PC 1..1122 17..1138 5610 100 Plus
CG9090-RB 1125 CG9090-PB 1..1122 17..1138 5610 100 Plus
CG9090-RA 1125 CG9090-PA 1..1122 17..1138 5610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-RC 1265 CG9090-RC 38..1160 16..1138 5615 100 Plus
CG9090-RB 1339 CG9090-RB 112..1234 16..1138 5615 100 Plus
CG9090-RA 1385 CG9090-RA 158..1280 16..1138 5615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20279400..20280166 975..209 3835 100 Minus
2R 25286936 2R 20280235..20280428 209..16 970 100 Minus
2R 25286936 2R 20279171..20279335 1138..974 825 100 Minus
3L 28110227 3L 14538726..14539072 443..789 760 81.3 Plus
3L 28110227 3L 14539553..14539864 787..1098 570 78.8 Plus
3L 28110227 3L 14538191..14538415 215..439 300 75.6 Plus
Blast to na_te.dros performed 2014-11-27 15:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\mini-me 4622 Dpse\mini-me DPSEMINIME 4622bp 300..323 92..115 111 95.8 Plus

BO14014.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:29 Download gff for BO14014.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 149..1280 10..1142 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:11 Download gff for BO14014.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 165..1280 23..1140 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:32 Download gff for BO14014.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 162..1277 23..1140 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:20 Download gff for BO14014.complete
Subject Subject Range Query Range Percent Splice Strand
CG9090-RA 165..1280 23..1140 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:20 Download gff for BO14014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20279169..20279334 975..1140 98 <- Minus
2R 20279401..20280165 210..974 100 <- Minus
2R 20280235..20280421 23..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:11 Download gff for BO14014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16166674..16166839 975..1140 98 <- Minus
arm_2R 16166906..16167670 210..974 100 <- Minus
arm_2R 16167740..16167926 23..209 100   Minus

BO14014.pep Sequence

Translation from 16 to 1156

> BO14014.pep
MFKSLFDAAQNSTFKSPFTSVNCQSATPTSAPTSTAVVTPTLKDVAPRQL
TRNHNIAAAAVAEGDSCEFGSNHYFLLCGLGGIISCGSTHTMVVPLDLVK
CRLQVDPAKYKSVFTGFRISLAEEGVRGLAKGWAPTFIGYSMQGLCKFGL
YEVFKKVYGDAIGEENAFLYRTGLYLAASASAEFFADIALAPMEAAKVKI
QTTPGFAKTLREALPKMTAQEGVTAFYKGLVPLWMRQIPYTMMKFACFER
TLELLYKYVVPKPRADCTKGEQLVVTFAAGYIAGVFCAIVSHPADTVVSK
LNQAKGASALDVAKQLGWSGLWGGLVPRIVMIGTLTAAQWFIYDAVKVFL
RMPRPPPPEMPESLKKKLGVTGEQASFLDH

BO14014.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9090-PC 374 CG9090-PC 1..374 1..374 1947 100 Plus
CG9090-PB 374 CG9090-PB 1..374 1..374 1947 100 Plus
CG9090-PA 374 CG9090-PA 1..374 1..374 1947 100 Plus
Mpcp-PC 356 CG4994-PC 1..354 1..367 1379 71.1 Plus
Mpcp-PB 356 CG4994-PB 1..354 1..367 1379 71.1 Plus