Clone Sequence Records
BO14015.3prime Sequence
669 bp (664 high quality bases) assembled on 2006-05-29
> BO14015.3prime
ATGGTCTAGAAAGCCTTGCCTTTTTACTCTTATCCTTGTCCTTGATGGTG
TACTTGTCGTAGGACTTGGTGGGATCGTAGGGCTCCCATCGGCTGGCTGG
GAAGATGTGCTTGTTGCGCTCGTACCAGGAGCGGAGGAGTACCTTTCCGG
CATGGGACTCCTCCTTCTCCACGGAGGCGTCGCTTATCATGCGCACATCG
TCGTGGACGTCGAACTGGAAGAGCGGGCCGGATTTGCCGCGTGCCTTGGT
CACGATAAAGTCGTAGAAGGAATAGTGGTGCGGCAGGATCAGATCCTCCT
TGACGTACATCAGCTGGTCGGCCATTACGGTCTTCAGTTCGATGAACTCC
TTGCGCAGCAGCTCCAGGCACTTCTGCAGAAACTGGTAGATGGAGTTGCC
CTTCTTCATCAGCACGTTCCGCCGATGGCCGGAGCCATCCCAGTAGCTGA
ACGTGATGGAGATGTCCTCGTCCTTCAGCTCCGCCTGCTGCATTACCCAT
TCTTGACGCAGCTGCTCGCGCAGTCTGTTCTCCTGCTCCTCGCGCTCGCG
ATCTGGCAGAAAGGAAGTGTCCACGTCAGGATTCTTGCATATCTTCTTCT
TCTTTATGGGCAAAATGTCTTCCTTGATCTCCGTCCCCTTGGGCTTGGGC
TGATCCTCCCTGCTTATTC
BO14015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-PA | 1080 | CG12259-RA | 438..1077 | 659..20 | 3175 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-RA | 1246 | CG12259-RA | 527..1172 | 666..20 | 3195 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27919918..27920557 | 20..659 | 3185 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:33:32 has no hits.
BO14015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:07 Download gff for
BO14015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-PA | 429..1080 | 19..669 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:43 Download gff for
BO14015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-PA | 429..1080 | 19..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:18:25 Download gff for
BO14015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 524..1180 | 11..669 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:07:21 Download gff for
BO14015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 524..1180 | 11..669 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:07:21 Download gff for
BO14015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27919910..27920566 | 11..669 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:18:25 Download gff for
BO14015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23745632..23746288 | 11..669 | 98 | | Plus |
BO14015.5prime Sequence
738 bp (644 high quality bases) assembled on 2006-05-29
> BO14015.5prime
GAAGTTATCAGTCGACATGGCCCACTACAAAGGTGCCGCCAGCGAGGCGG
GCCGTGCAGCCCAGCTGATGAAGAAGCGGGAGATCCAGCAGCAGGAGATC
GAGTTTCGCAAGAAGAAGATCGAGGAGGAGCTCAAGCTGGACAAGATTGA
GAACAAGTTTGCCACCCACTACGATGCCGTGGAGCAGCAGCTCAAGTCCT
CGACCATTGGTCTGGTCACCCTCGACGAGATGAAGGCCAAGCAGGAGGAT
ATAGTGCGGGAACGGGAGAAGAAGCTCGCCCAGAAGAAGGACGAAAAGGA
TCGGGAGAAGCAGCGCGCCCTGGAGGCCATTCAGGCGGAGAAGAACAAGC
AGAAGCGGCAGATCCAGGCGCTGTCCTTCAACCTGGACGACGACGAGGAG
GAGGAGGAGGAGGACGACGAGGATCACGATAAGAAACAGCTGAAGATTAA
GCAGGAGGATCAGCCCAAGCCCAAGTGGACGGAGATCAAGGAAGACATTT
TGCCCATAAAGAAGAAGAAGATATGCAAGAATCCTGACGTGGACACTTCC
TTTCTGCCAGATCGCGAGCGCGAGGAGCAGGAGAACAGACTGCGCGAGCA
GCTGCGTCAAGAATGGGTAATGCAGCAGGCGGAGCTGAAGGACGAGGACA
TCTCCATCACGTTCAGCTACTGGGATGGGTCCGGCCATCGGCGGAACGTG
CTGATGAAGAAGGGCAACTCCATCTACCAGTTTCTGCA
BO14015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-PA | 1080 | CG12259-RA | 1..722 | 17..738 | 3585 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-RA | 1246 | CG12259-RA | 96..817 | 17..738 | 3595 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27920273..27920994 | 738..17 | 3595 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:15:14 has no hits.
BO14015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:08 Download gff for
BO14015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-PA | 1..721 | 17..737 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:43 Download gff for
BO14015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-PA | 1..721 | 17..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:49 Download gff for
BO14015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 93..816 | 10..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:49 Download gff for
BO14015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 93..816 | 10..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:49 Download gff for
BO14015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27920274..27920997 | 10..737 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:49 Download gff for
BO14015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23745996..23746719 | 10..737 | 99 | | Minus |
BO14015.complete Sequence
1112 bp assembled on 2011-06-28
> BO14015.complete
GAAGTTATCAGTCGACATGGCCCACTACAAAGGTGCCGCCAGCGAGGCGG
GCCGTGCAGCCCAGCTGATGAAGAAGCGGGAGATCCAGCAGCAGGAGATC
GAGTTTCGCAAGAAGAAGATCGAGGAGGAGCTCAAGCTGGACAAGATTGA
GAACAAGTTTGCCACCCACTACGATGCCGTGGAGCAGCAGCTCAAGTCCT
CGACCATTGGTCTGGTCACCCTCGACGAGATGAAGGCCAAGCAGGAGGAT
ATAGTGCGGGAACGGGAGAAGAAGCTCGCCCAGAAGAAGGACGAAAAGGA
TCGGGAGAAGCAGCGCGCCCTGGAGGCCATTCAGGCGGAGAAGAACAAGC
AGAAGCGGCAGATCCAGGCGCTGTCCTTCAACCTGGACGACGACGAGGAG
GAGGAGGAGGAGGACGACGAGGATCACGATAAGAAACAGCTGAAGATTAA
GCAGGAGGATCAGCCCAAGCCCAAGTGGACGGAGATCAAGGAAGACATTT
TGCCCATAAAGAAGAAGAAGATATGCAAGAATCCTGACGTGGACACTTCC
TTTCTGCCAGATCGCGAGCGCGAGGAGCAGGAGAACAGACTGCGCGAGCA
GCTGCGTCAAGAATGGGTAATGCAGCAGGCGGAGCTGAAGGACGAGGACA
TCTCCATCACGTTCAGCTACTGGGATGGCTCCGGCCATCGGCGGAACGTG
CTGATGAAGAAGGGCAACTCCATCTACCAGTTTCTGCAGAAGTGCCTGGA
GCTGCTGCGCAAGGAGTTCATCGAACTGAAGACCGTAATGGCCGACCAGC
TGATGTACGTCAAGGAGGATCTGATCCTGCCGCACCACTATTCCTTCTAC
GACTTTATCGTGACCAAGGCACGCGGCAAATCCGGCCCGCTCTTCCAGTT
CGACGTCCACGACGATGTGCGCATGATAAGCGACGCCTCCGTGGAGAAGG
AGGAGTCCCATGCCGGAAAGGTACTCCTCCGCTCCTGGTACGAGCGCAAC
AAGCACATCTTCCCAGCCAGCCGATGGGAGCCCTACGATCCCACCAAGTC
CTACGACAAGTACACCATCAAGGACAAGGATAAGAGTAAAAAGGCAAGGC
TTTCTAGACCAT
BO14015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-RA | 1080 | CG12259-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-RA | 1246 | CG12259-RA | 96..1172 | 17..1093 | 5385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27919918..27920994 | 1093..17 | 5385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:04:07 has no hits.
BO14015.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:00 Download gff for
BO14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 78..1154 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:37 Download gff for
BO14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 96..1172 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:28 Download gff for
BO14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 96..1172 | 17..1095 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:28 Download gff for
BO14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27919916..27920994 | 17..1095 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:37 Download gff for
BO14015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23745638..23746716 | 17..1095 | 99 | | Minus |
BO14015.pep Sequence
Translation from 16 to 1111
> BO14015.pep
MAHYKGAASEAGRAAQLMKKREIQQQEIEFRKKKIEEELKLDKIENKFAT
HYDAVEQQLKSSTIGLVTLDEMKAKQEDIVREREKKLAQKKDEKDREKQR
ALEAIQAEKNKQKRQIQALSFNLDDDEEEEEEDDEDHDKKQLKIKQEDQP
KPKWTEIKEDILPIKKKKICKNPDVDTSFLPDREREEQENRLREQLRQEW
VMQQAELKDEDISITFSYWDGSGHRRNVLMKKGNSIYQFLQKCLELLRKE
FIELKTVMADQLMYVKEDLILPHHYSFYDFIVTKARGKSGPLFQFDVHDD
VRMISDASVEKEESHAGKVLLRSWYERNKHIFPASRWEPYDPTKSYDKYT
IKDKDKSKKARLSRP
BO14015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-PA | 359 | CG12259-PA | 1..359 | 1..359 | 1862 | 100 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1399..1574 | 13..199 | 158 | 25.7 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1399..1574 | 13..199 | 158 | 25.7 | Plus |
