Clone Sequence Records
BO14016.complete Sequence
991 bp assembled on 2008-09-03
GenBank Submission: KX799517
> BO14016.complete
GAAGTTATCAGTCGACATGGATACGACAGAAAAGGCTCTCAAGGAGGTGA
CCCCGGCGATGCTTAGCCTGAACAATTGCCCGGGCACAACGCCCGGCACG
CCGATGAGCAAAAATCAGCTTAAGAAGCAGCGAAAGCTGGCGGAGTTTGC
CGAACTCCGGAAGCTGCGACGCGAACGGGAGCGTGAGAAGAAAAAGCAGA
AGCGGCGGGAGGCCAAGGAGCTGGGTCTGCCCGTCCGGACGGGACCCTCC
CGCAAGGAGCTGAAGAAACGCCAGTTGGCAGACGGCGGAAAGTCTGGCCT
CTCGGTCGCTATAGATCTGGACTACGACGATCTGATGCAGGAACGGGACA
TCGTCAAGTGCGTGAAGCAGTGCCTTCGCATCTACACCATTAATCGGCGC
AGCCCACAGCCGGGCAATCTGCACTTCACAGGCATCCGGCGCAACGGTCA
CATCCACGAGTCATTCAAGAAGAACGAAGGCTGGGAGAACTGGCACGTGC
AGTACTACTTCGATCGCGGGCACACCGATATTTTCGAGCATAGCCAACTG
GTCTACCTCACCTGCGAGTCGGATCGGGTGTTGGACAAGCTGCAGCCCGG
CTGCACCTACGTCATCGGTGGCCTGGTGGACCACAATCACTTCAAGGGCC
TGTGCCACTCGAGGGCCACGTCGGCGGGGCTGACTACCGCTCGCCTCCCG
CTTAGCGAGCATGTAGACATGAAGACGAGGGCCGTGCTGAGCACCTACCA
TGTGTTTGAGCTGCTGACCAAAGTTGCTGCCGGTCAGGACTGGACTACGG
CCATTCTGGAAACTATTCCCATGCGCAAGGGAGCCAAGGCGAAAATCACA
GACAAAAAGGAGCCGAATCATTGCTTGGAGCAGCAGGATGAAAAACAGAA
ACAGGAAGCTGAGTCAGATAAGCCCACCTTAACCGCCGTCGAGTCTGAAA
TCGAATCCCATTCTTTAGACAGTGCAAGCTTTCTAGACCAT
BO14016.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-RA | 960 | CG14618-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-RA | 1210 | CG14618-RA | 113..1069 | 17..973 | 4785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22473810..22474545 | 17..752 | 3680 | 100 | Plus |
X | 23542271 | X | 22474636..22474857 | 752..973 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:35:24 has no hits.
BO14016.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:41 Download gff for
BO14016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 70..1037 | 6..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:23 Download gff for
BO14016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 113..1069 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:15 Download gff for
BO14016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 81..1037 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:19 Download gff for
BO14016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 113..1069 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:19 Download gff for
BO14016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22473810..22474545 | 17..752 | 100 | -> | Plus |
X | 22474637..22474857 | 753..975 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:23 Download gff for
BO14016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21875646..21876381 | 17..752 | 100 | -> | Plus |
arm_X | 21876473..21876693 | 753..975 | 99 | | Plus |
BO14016.3prime Sequence
648 bp (600 high quality bases) assembled on 2006-05-29
> BO14016.3prime
ATGGTCTAGAAAGCTTGCACTGTCTAAAGAATGGGATTCGATTTCAGACT
CGACGGCGGTTAAGGTGGGCTTATCTGACTCAGCTTCCTGTTTCTGTTTT
TCATCCTGCTGCTCCAAGCAATGATTCGGCTCCTTTTTGTCTGTGATTTT
CGCCTTGGCTCCCTTGCGCATGGGAATAGTTTCCAGAATGGCCGTAGTCC
AGTCCTGACCGGCAGCAACTTTGGTCAGCAGCTCAAACACATGGTAGGTG
CTCAGCACGGCCCTCGTCTTCATGTCTACATGCTCGCTAAGCGGGAGGCG
AGCGGTAGTCAGCCCCGCCGACGTGGCCCTCGAGTGGCACAGGCCCTTGA
AGTGATTGTGGTCCACCAGGCCACCGATGACGTAGGTGCAGCCGGGCTGC
AGCTTGTCCAACACCCGATCCGACTCGCAGGTGAGGTAGACCAGTTGGCT
ATGCTCGAAAATATCGGTGTGCCCGCGATCAAAGTAGTACTGCACGTGCC
AGTTCTCCCAGCCTTCGTTCTTCTTGAATGACTCGTGGATGTGACCGTTG
CGCCCGGATGCCTGTGAAGTGCAAATTGCCCGGTTGTGGGCTGCGCCGAT
TAATGATGTAGATGCGAAGGCACTGCTTCCCGCAACTTGACGAAGTCC
BO14016.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-PA | 960 | CG14618-RA | 422..957 | 554..19 | 2655 | 99.8 | Minus |
CG14618-PA | 960 | CG14618-RA | 348..423 | 629..554 | 305 | 96 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-RA | 1210 | CG14618-RA | 442..1069 | 648..19 | 3010 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22474139..22474545 | 648..240 | 1855 | 98 | Minus |
X | 23542271 | X | 22474636..22474857 | 240..19 | 1110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:36:12 has no hits.
BO14016.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:09 Download gff for
BO14016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-PA | 330..960 | 16..648 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:46 Download gff for
BO14016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-PA | 330..960 | 16..648 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:18:51 Download gff for
BO14016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 442..1069 | 19..648 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:18:30 Download gff for
BO14016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 442..1069 | 19..648 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:18:30 Download gff for
BO14016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22474139..22474545 | 240..648 | 98 | -> | Minus |
X | 22474637..22474855 | 21..239 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:18:51 Download gff for
BO14016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21875975..21876381 | 240..648 | 98 | -> | Minus |
arm_X | 21876473..21876691 | 21..239 | 100 | -> | Minus |
BO14016.5prime Sequence
618 bp (602 high quality bases) assembled on 2006-05-29
> BO14016.5prime
GAAGTTATCAGTCGACATGGATACGACAGAAAAGGCTCTCAAGGAGGTGA
CCCCGGCGATGCTTAGCCTGAACAATTGCCCGGGCACAACGCCCGGCACG
CCGATGAGCAAAAATCAGCTTAAGAAGCAGCGAAAGCTGGCGGAGTTTGC
CGAACTCCGGAAGCTGCGACGCGAACGGGAGCGTGAGAAGAAAAAGCAGA
AGCGGCGGGAGGCCAAGGAGCTGGGTCTGCCCGTCCGGACGGGACCCTCC
CGCAAGGAGCTGAAGAAACGCCAGTTGGCAGACGGCGGAAAGTCTGGCCT
CTCGGTCGCTATAGATCTGGACTACGACGATCTGATGCACGAACGGGACA
TCGTCAAGTGCGTGAAGCAGTGCCTTCGCATCTACACCATTAATCGGCGC
AGCCCACAGCCGGGCAATCTGCACTTCACAGGCATCCGGCGCAACGGTCA
CATCCACGAGTCATTCAAGAAGAACGAAGGCTGGGAGAACTGGCACGTGC
AGTACTACTTCGATCGCGGGCACACCGATATTTTCGAGCATAGCCCAACT
GGTCTACCTCACCTGCGAGTCGGATCGGGTGTTGGACAAGCTGCAGCCCG
GCTGCACCTACGTCATCG
BO14016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-PA | 960 | CG14618-RA | 1..529 | 17..545 | 2620 | 99.8 | Plus |
CG14618-PA | 960 | CG14618-RA | 528..601 | 545..618 | 370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-RA | 1210 | CG14618-RA | 113..713 | 17..618 | 2970 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22473810..22474410 | 17..618 | 2945 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:44:32 has no hits.
BO14016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:10 Download gff for
BO14016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-PA | 1..601 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:47 Download gff for
BO14016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-PA | 1..601 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:05:02 Download gff for
BO14016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 102..713 | 6..618 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:59 Download gff for
BO14016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14618-RA | 102..713 | 6..618 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:59 Download gff for
BO14016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22473799..22474410 | 6..618 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:05:02 Download gff for
BO14016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21875635..21876246 | 6..618 | 98 | | Plus |
BO14016.pep Sequence
Translation from 16 to 991
> BO14016.pep
MDTTEKALKEVTPAMLSLNNCPGTTPGTPMSKNQLKKQRKLAEFAELRKL
RREREREKKKQKRREAKELGLPVRTGPSRKELKKRQLADGGKSGLSVAID
LDYDDLMQERDIVKCVKQCLRIYTINRRSPQPGNLHFTGIRRNGHIHESF
KKNEGWENWHVQYYFDRGHTDIFEHSQLVYLTCESDRVLDKLQPGCTYVI
GGLVDHNHFKGLCHSRATSAGLTTARLPLSEHVDMKTRAVLSTYHVFELL
TKVAAGQDWTTAILETIPMRKGAKAKITDKKEPNHCLEQQDEKQKQEAES
DKPTLTAVESEIESHSLDSASFLDH
BO14016.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14618-PA | 319 | CG14618-PA | 1..319 | 1..319 | 1679 | 100 | Plus |
CG5190-PA | 446 | CG5190-PA | 127..384 | 43..285 | 174 | 22.3 | Plus |