Clone Sequence Records
BO14017.5prime Sequence
512 bp (511 high quality bases) assembled on 2006-05-29
> BO14017.5prime
GAAGTTATCAGTCGACATGGCGACAGCAGTTCCCATGAAAAAAAACTGGA
GCCCCAGCATGAAACACAACGATATGGAGCGATGGATTTGCATATATCCC
GCCTACATCAATAGGAAAAAGACACGCCAGGAGGGTCGACGGCTGCCCAA
GGAGAACTGTGTAGACAATCCCAGCTATATTGAGATTCGCGATGTGCTGT
CCGTTTCCAACTTGCAGTTCCTCATGGAGAACAAGAAGTACTGTCGCGAG
AACAGCAGCGAGATGGAGTTCCGTGGTCGTGTGCGCGTCCAGCTGCGTAA
TGTCGATGGCACTTTGTACAATAATGACTTTCCCACGCGCGAGTCCATCA
TGCTGCATATCGCCAGCAAGATACCGCAGCTGAAGACGCGACAGAACAAA
TCCGGCGACTCGTACCACCAGCAGTCGCAGCCACAGTCGAATGCATCCGG
ATCTGGGGGTGGTGGTGGCGGCAAGAAGGGAAAGGGCAAGCGCCGCGCAA
GCTTTCTAGACC
BO14017.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4457-PA | 483 | Srp19-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp19-RA | 653 | CG4457-RA | 114..593 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7347370..7347785 | 496..81 | 2080 | 100 | Minus |
3L | 28110227 | 3L | 7347857..7347921 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:44:29 has no hits.
BO14017.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:11 Download gff for
BO14017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp19-PA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:49 Download gff for
BO14017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4457-PA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:05:00 Download gff for
BO14017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp19-RA | 112..602 | 14..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:49 Download gff for
BO14017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp19-RA | 112..602 | 14..504 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:49 Download gff for
BO14017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7347361..7347784 | 82..504 | 99 | <- | Minus |
3L | 7347857..7347923 | 14..81 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:05:00 Download gff for
BO14017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7340461..7340884 | 82..504 | 99 | <- | Minus |
arm_3L | 7340957..7341023 | 14..81 | 98 | | Minus |
BO14017.complete Sequence
514 bp assembled on 2006-10-11
GenBank Submission: FJ632997
> BO14017.complete
GAAGTTATCAGTCGACATGGCGACAGCAGTTCCCATGAAAAAAAACTGGA
GCCCCAGCATGAAACACAACGATATGGAGCGATGGATTTGCATATATCCC
GCCTACATCAATAGGAAAAAGACACGCCAGGAGGGTCGACGGCTGCCCAA
GGAGAACTGTGTAGACAATCCCAGCTATATTGAGATTCGCGATGTGCTGT
CCGTTTCCAACTTGCAGTTCCTCATGGAGAACAAGAAGTACTGTCGCGAG
AACAGCAGCGAGATGGAGTTCCGTGGTCGTGTGCGCGTCCAGCTGCGTAA
TGTCGATGGCACTTTGTACAATAATGACTTTCCCACGCGCGAGTCCATCA
TGCTGCATATCGCCAGCAAGATACCGCAGCTGAAGACGCGACAGAACAAA
TCCGGCGACTCGTACCACCAGCAGTCGCAGCCACAGTCGAATGCATCCGG
ATCTGGGGGTGGTGGTGGCGGCAAGAAGGGAAAGGGCAAGCGCCGCGCAA
GCTTTCTAGACCAT
BO14017.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp19-RA | 483 | CG4457-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp19-RA | 653 | CG4457-RA | 114..593 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7347370..7347785 | 496..81 | 2080 | 100 | Minus |
3L | 28110227 | 3L | 7347857..7347921 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:50 has no hits.
BO14017.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:02 Download gff for
BO14017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp19-RA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:55 Download gff for
BO14017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp19-RA | 92..582 | 14..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:12 Download gff for
BO14017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp19-RA | 114..593 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:03 Download gff for
BO14017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp19-RA | 92..582 | 14..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:30 Download gff for
BO14017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp19-RA | 114..593 | 17..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:30 Download gff for
BO14017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7347368..7347784 | 82..498 | 99 | <- | Minus |
3L | 7347857..7347921 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:12 Download gff for
BO14017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7340468..7340884 | 82..498 | 99 | <- | Minus |
arm_3L | 7340957..7341021 | 17..81 | 100 | | Minus |
BO14017.pep Sequence
Translation from 16 to 514
> BO14017.pep
MATAVPMKKNWSPSMKHNDMERWICIYPAYINRKKTRQEGRRLPKENCVD
NPSYIEIRDVLSVSNLQFLMENKKYCRENSSEMEFRGRVRVQLRNVDGTL
YNNDFPTRESIMLHIASKIPQLKTRQNKSGDSYHQQSQPQSNASGSGGGG
GGKKGKGKRRASFLDH
BO14017.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp19-PA | 160 | CG4457-PA | 1..160 | 1..160 | 853 | 100 | Plus |