Clone BO14017 Report

Search the DGRC for BO14017

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptSrp19-RA
Protein status:BO14017.pep: validated full length
Sequenced Size:514

Clone Sequence Records

BO14017.5prime Sequence

512 bp (511 high quality bases) assembled on 2006-05-29

> BO14017.5prime
GAAGTTATCAGTCGACATGGCGACAGCAGTTCCCATGAAAAAAAACTGGA
GCCCCAGCATGAAACACAACGATATGGAGCGATGGATTTGCATATATCCC
GCCTACATCAATAGGAAAAAGACACGCCAGGAGGGTCGACGGCTGCCCAA
GGAGAACTGTGTAGACAATCCCAGCTATATTGAGATTCGCGATGTGCTGT
CCGTTTCCAACTTGCAGTTCCTCATGGAGAACAAGAAGTACTGTCGCGAG
AACAGCAGCGAGATGGAGTTCCGTGGTCGTGTGCGCGTCCAGCTGCGTAA
TGTCGATGGCACTTTGTACAATAATGACTTTCCCACGCGCGAGTCCATCA
TGCTGCATATCGCCAGCAAGATACCGCAGCTGAAGACGCGACAGAACAAA
TCCGGCGACTCGTACCACCAGCAGTCGCAGCCACAGTCGAATGCATCCGG
ATCTGGGGGTGGTGGTGGCGGCAAGAAGGGAAAGGGCAAGCGCCGCGCAA
GCTTTCTAGACC

BO14017.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4457-PA 483 Srp19-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
Srp19-RA 653 CG4457-RA 114..593 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7347370..7347785 496..81 2080 100 Minus
3L 28110227 3L 7347857..7347921 81..17 325 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:44:29 has no hits.

BO14017.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:11 Download gff for BO14017.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp19-PA 1..483 17..500 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:49 Download gff for BO14017.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4457-PA 1..483 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:05:00 Download gff for BO14017.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp19-RA 112..602 14..504 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:49 Download gff for BO14017.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp19-RA 112..602 14..504 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:49 Download gff for BO14017.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7347361..7347784 82..504 99 <- Minus
3L 7347857..7347923 14..81 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:05:00 Download gff for BO14017.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7340461..7340884 82..504 99 <- Minus
arm_3L 7340957..7341023 14..81 98   Minus

BO14017.complete Sequence

514 bp assembled on 2006-10-11

GenBank Submission: FJ632997

> BO14017.complete
GAAGTTATCAGTCGACATGGCGACAGCAGTTCCCATGAAAAAAAACTGGA
GCCCCAGCATGAAACACAACGATATGGAGCGATGGATTTGCATATATCCC
GCCTACATCAATAGGAAAAAGACACGCCAGGAGGGTCGACGGCTGCCCAA
GGAGAACTGTGTAGACAATCCCAGCTATATTGAGATTCGCGATGTGCTGT
CCGTTTCCAACTTGCAGTTCCTCATGGAGAACAAGAAGTACTGTCGCGAG
AACAGCAGCGAGATGGAGTTCCGTGGTCGTGTGCGCGTCCAGCTGCGTAA
TGTCGATGGCACTTTGTACAATAATGACTTTCCCACGCGCGAGTCCATCA
TGCTGCATATCGCCAGCAAGATACCGCAGCTGAAGACGCGACAGAACAAA
TCCGGCGACTCGTACCACCAGCAGTCGCAGCCACAGTCGAATGCATCCGG
ATCTGGGGGTGGTGGTGGCGGCAAGAAGGGAAAGGGCAAGCGCCGCGCAA
GCTTTCTAGACCAT

BO14017.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Srp19-RA 483 CG4457-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Srp19-RA 653 CG4457-RA 114..593 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7347370..7347785 496..81 2080 100 Minus
3L 28110227 3L 7347857..7347921 81..17 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:41:50 has no hits.

BO14017.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:02 Download gff for BO14017.complete
Subject Subject Range Query Range Percent Splice Strand
Srp19-RA 1..483 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:55 Download gff for BO14017.complete
Subject Subject Range Query Range Percent Splice Strand
Srp19-RA 92..582 14..504 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:12 Download gff for BO14017.complete
Subject Subject Range Query Range Percent Splice Strand
Srp19-RA 114..593 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:03 Download gff for BO14017.complete
Subject Subject Range Query Range Percent Splice Strand
Srp19-RA 92..582 14..504 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:30 Download gff for BO14017.complete
Subject Subject Range Query Range Percent Splice Strand
Srp19-RA 114..593 17..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:30 Download gff for BO14017.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7347368..7347784 82..498 99 <- Minus
3L 7347857..7347921 17..81 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:12 Download gff for BO14017.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7340468..7340884 82..498 99 <- Minus
arm_3L 7340957..7341021 17..81 100   Minus

BO14017.pep Sequence

Translation from 16 to 514

> BO14017.pep
MATAVPMKKNWSPSMKHNDMERWICIYPAYINRKKTRQEGRRLPKENCVD
NPSYIEIRDVLSVSNLQFLMENKKYCRENSSEMEFRGRVRVQLRNVDGTL
YNNDFPTRESIMLHIASKIPQLKTRQNKSGDSYHQQSQPQSNASGSGGGG
GGKKGKGKRRASFLDH

BO14017.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Srp19-PA 160 CG4457-PA 1..160 1..160 853 100 Plus