Clone BO14019 Report

Search the DGRC for BO14019

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptrho-7-RA
Protein status:BO14019.pep: validated full length
Sequenced Size:1087

Clone Sequence Records

BO14019.3prime Sequence

614 bp (567 high quality bases) assembled on 2006-05-29

> BO14019.3prime
ATGGTCTAGAAAGCTTGCTTTCTGCTTCGTCCGGCGCAGGTCATGGTAGT
AATTCAGTAGACCAATGCGCTTTGCCCATATCTGTGCCCCATACGTGGCC
CAAAAGATGCCAAACATGGCGCCGCCCAAATGCGCTGCGTGATCGAAGAA
CTTCCAGCCCATCACGACGCCAGCAAAGTCGATGCCCATTAGCACTTTAA
TACCAGCTCCAGCGGAGAATGTCAACGCGGGTAGAAAGAGAATGCTAAGT
TGTGTGTCCGGATACTGGGTGCATACATAGGCCAGCAGTGTCATTATAGC
TCCAGACGCACCCAGGGACATCCCCGCCTGACTCGTGGCCGCCTTGTAGA
GCACGCTCATCAGACTGGAGAAGACGCCGGCGCTGAGGTAGACCGCTAAG
AATTGCTCTTTACCCAACGATACAGCCGCAGCGTTGGCAAAGCTGTGCAT
CACGTACATATTGGCGAAAAGGTGCATAGCCGAGTAATGGCTGAATGTGG
ACAGGAACATGGGCCAGCAGACGACTTTCGCCGCTGGATTGGATGTGAAG
TAGGTAATCATTGTGGATTTCAGAGCGGGCACCCGCCCCATGGCGAAGGC
CACCAAATTGCAGA

BO14019.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8972-PA 1056 rho-7-RA 458..1053 614..19 2955 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-RB 1533 CG8972-RB 576..1171 614..19 2965 99.8 Minus
rho-7-RA 1328 CG8972-RA 576..1171 614..19 2965 99.8 Minus
CG34231-RC 1494 CG34231-RC 1122..1342 307..527 1105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11987281..11987501 307..527 1105 100 Plus
2R 25286936 2R 11987027..11987227 107..307 1005 100 Plus
2R 25286936 2R 11986875..11986962 19..106 440 100 Plus
2R 25286936 2R 11988002..11988088 528..614 420 98.9 Plus
Blast to na_te.dros performed on 2015-02-10 18:00:10 has no hits.

BO14019.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:13 Download gff for BO14019.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-7-PA 459..1056 18..613 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:52 Download gff for BO14019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8972-PA 459..1056 18..613 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:55:53 Download gff for BO14019.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 577..1171 19..613 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:19:15 Download gff for BO14019.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 577..1171 19..613 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:19:15 Download gff for BO14019.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11987027..11987226 107..306 100 <- Plus
2R 11987281..11987501 307..527 100 <- Plus
2R 11988002..11988087 528..613 98   Plus
2R 11986875..11986962 19..106 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:55:53 Download gff for BO14019.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7874380..7874467 19..106 100 <- Plus
arm_2R 7874532..7874731 107..306 100 <- Plus
arm_2R 7874786..7875006 307..527 100 <- Plus
arm_2R 7875507..7875592 528..613 98   Plus

BO14019.5prime Sequence

679 bp (593 high quality bases) assembled on 2006-05-29

> BO14019.5prime
GAAGTTATCAGTCGACATGCTCATGAGTCGAGCGCTTTGCCGGAGCTGGC
TACCCCAGGTGGCCCGCAGATGTCATGCTAATGTGAATGTGCCAATCCTG
CGGATAAACTCTGGTCATCCGGCGGCGAGGTCATGTCGGCAGATTCACAG
CAACCGAAAACAGAGCAGCAACCTGAAGCCGACGACTGGGGAGCCTGCGG
CAGCGGAGCAGAACACCCCGGTGCCGGTGAACAATGTGATCAAGGCGGTG
GCCTTCACGGGAGCATTTACGGTCGGCTGCTTTGCGGGTGCCACCATCCT
GGAGTACGAGAACACACGTAGCCTAATCCTAGAAAAGGCTCGCCAGGCGA
GATTCGGTTGGTGGCAGAGTCGTTCGCTGGCGGACAGGGATTACTGGACA
CAGATCAAACAAGACATCCGGCGGCACTGGGACTCACTGACACCCGGCGA
CAAGATGTTTGCTCCTATCTTACTCTGCAATTTGGTGGCCTTCGCCATGT
GGCGGGTGCCCGCTCTGAAATCCACAATGATTACCTACTTCACATCCAAT
CCAGCGGCGAAAGTCGTCTGCTGGCCCATGTTCCTGTCCACATTCAGCCA
TTACTCGGCTATGCACCTTTTCGCCAATATGTACGTGATGCACAGCTTTG
CCAACGCTGCGGCTGTATCGTTGGGTAAA

BO14019.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8972-PA 1056 rho-7-RA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-RB 1533 CG8972-RB 119..781 17..679 3315 100 Plus
rho-7-RA 1328 CG8972-RA 119..781 17..679 3315 100 Plus
CG34231-RC 1494 CG34231-RC 1224..1342 679..561 595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11988002..11988296 560..266 1475 100 Minus
2R 25286936 2R 11988362..11988563 265..64 1010 100 Minus
2R 25286936 2R 11987383..11987501 679..561 595 100 Minus
2R 25286936 2R 11988623..11988669 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:26:13 has no hits.

BO14019.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:14 Download gff for BO14019.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-7-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:53 Download gff for BO14019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8972-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:13 Download gff for BO14019.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 107..778 7..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:21 Download gff for BO14019.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 107..778 7..676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:21 Download gff for BO14019.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11988002..11988296 266..560 100 <- Minus
2R 11988362..11988563 64..265 100 <- Minus
2R 11988623..11988681 7..63 93   Minus
2R 11987386..11987501 561..676 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:13 Download gff for BO14019.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7874891..7875006 561..676 100 <- Minus
arm_2R 7875507..7875801 266..560 100 <- Minus
arm_2R 7875867..7876068 64..265 100 <- Minus
arm_2R 7876128..7876186 7..63 93   Minus

BO14019.complete Sequence

1087 bp assembled on 2006-10-11

GenBank Submission: FJ632998

> BO14019.complete
GAAGTTATCAGTCGACATGCTCATGAGTCGAGCGCTTTGCCGGAGCTGGC
TACCCCAGGTGGCCCGCAGATGTCATGCTAATGTGAATGTGCCAATCCTG
CGGATAAACTCTGGTCATCCGGCGGCGAGGTCATGTCGGCAGATTCACAG
CAACCGAAAACAGAGCAGCAACCTGAAGCCGACGACTGGGGAGCCTGCGG
CAGCGGAGCAGAACACCCCGGTGCCGGTGAACAATGTGATCAAGGCGGTG
GCCTTCACGGGAGCATTTACGGTCGGCTGCTTTGCGGGTGCCACCATCCT
GGAGTACGAGAACACACGTAGCCTAATCCTAGAAAAGGCTCGCCAGGCGA
GATTCGGTTGGTGGCAGAGTCGTTCGCTGGCGGACAGGGATTACTGGACA
CAGATCAAACAAGACATCCGGCGGCACTGGGACTCACTGACACCCGGCGA
CAAGATGTTTGCTCCTATCTTACTCTGCAATTTGGTGGCCTTCGCCATGT
GGCGGGTGCCCGCTCTGAAATCCACAATGATTACCTACTTCACATCCAAT
CCAGCGGCGAAAGTCGTCTGCTGGCCCATGTTCCTGTCCACATTCAGCCA
TTACTCGGCTATGCACCTTTTCGCCAATATGTACGTGATGCACAGCTTTG
CCAACGCTGCGGCTGTATCGTTGGGTAAAGAGCAATTCTTAGCGGTCTAC
CTCAGCGCCGGCGTCTTCTCCAGTCTGATGAGCGTGCTCTACAAGGCGGC
CACGAGTCAGGCGGGGATGTCCCTGGGTGCGTCTGGAGCTATAATGACAC
TGCTGGCCTATGTATGCACCCAGTATCCGGACACACAACTTAGCATTCTC
TTTCTACCCGCGTTGACATTCTCCGCTGGAGCTGGTATTAAAGTGCTAAT
GGGCATCGACTTTGCTGGCGTCGTGATGGGCTGGAAGTTCTTCGATCACG
CAGCGCATTTGGGCGGCGCCATGTTTGGCATCTTTTGGGCCACGTATGGG
GCACAGATATGGGCAAAGCGCATTGGTCTACTGAATTACTACCATGACCT
GCGCCGGACGAAGCAGAAAGCAAGCTTTCTAGACCAT

BO14019.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-RB 1056 CG8972-PB 1..1053 17..1069 5265 100 Plus
rho-7-RA 1056 CG8972-PA 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-RB 1533 CG8972-RB 119..1171 17..1069 5265 100 Plus
rho-7-RA 1328 CG8972-RA 119..1171 17..1069 5265 100 Plus
CG34231-RC 1494 CG34231-RC 1122..1342 781..561 1105 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11988002..11988296 560..266 1475 100 Minus
2R 25286936 2R 11987281..11987501 781..561 1105 100 Minus
2R 25286936 2R 11988362..11988563 265..64 1010 100 Minus
2R 25286936 2R 11987027..11987227 981..781 1005 100 Minus
2R 25286936 2R 11986875..11986962 1069..982 440 100 Minus
2R 25286936 2R 11988623..11988669 63..17 235 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:51:48 has no hits.

BO14019.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:13 Download gff for BO14019.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 1..1056 17..1070 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:01 Download gff for BO14019.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 76..1140 7..1069 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:52 Download gff for BO14019.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 119..1171 17..1071 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:13 Download gff for BO14019.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 76..1140 7..1069 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:45 Download gff for BO14019.complete
Subject Subject Range Query Range Percent Splice Strand
rho-7-RA 119..1171 17..1071 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:45 Download gff for BO14019.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11986873..11986962 982..1071 97 <- Minus
2R 11987027..11987226 782..981 100 <- Minus
2R 11987281..11987501 561..781 100 <- Minus
2R 11988002..11988296 266..560 100 <- Minus
2R 11988362..11988563 64..265 100 <- Minus
2R 11988623..11988669 17..63 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:52 Download gff for BO14019.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7874786..7875006 561..781 100 <- Minus
arm_2R 7874378..7874467 982..1071 97 <- Minus
arm_2R 7874532..7874731 782..981 100 <- Minus
arm_2R 7875507..7875801 266..560 100 <- Minus
arm_2R 7875867..7876068 64..265 100 <- Minus
arm_2R 7876128..7876174 17..63 100   Minus

BO14019.pep Sequence

Translation from 16 to 1087

> BO14019.pep
MLMSRALCRSWLPQVARRCHANVNVPILRINSGHPAARSCRQIHSNRKQS
SNLKPTTGEPAAAEQNTPVPVNNVIKAVAFTGAFTVGCFAGATILEYENT
RSLILEKARQARFGWWQSRSLADRDYWTQIKQDIRRHWDSLTPGDKMFAP
ILLCNLVAFAMWRVPALKSTMITYFTSNPAAKVVCWPMFLSTFSHYSAMH
LFANMYVMHSFANAAAVSLGKEQFLAVYLSAGVFSSLMSVLYKAATSQAG
MSLGASGAIMTLLAYVCTQYPDTQLSILFLPALTFSAGAGIKVLMGIDFA
GVVMGWKFFDHAAHLGGAMFGIFWATYGAQIWAKRIGLLNYYHDLRRTKQ
KASFLDH

BO14019.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
rho-7-PB 351 CG8972-PB 1..351 1..351 1846 100 Plus
rho-7-PA 351 CG8972-PA 1..351 1..351 1846 100 Plus