Clone Sequence Records
BO14019.3prime Sequence
614 bp (567 high quality bases) assembled on 2006-05-29
> BO14019.3prime
ATGGTCTAGAAAGCTTGCTTTCTGCTTCGTCCGGCGCAGGTCATGGTAGT
AATTCAGTAGACCAATGCGCTTTGCCCATATCTGTGCCCCATACGTGGCC
CAAAAGATGCCAAACATGGCGCCGCCCAAATGCGCTGCGTGATCGAAGAA
CTTCCAGCCCATCACGACGCCAGCAAAGTCGATGCCCATTAGCACTTTAA
TACCAGCTCCAGCGGAGAATGTCAACGCGGGTAGAAAGAGAATGCTAAGT
TGTGTGTCCGGATACTGGGTGCATACATAGGCCAGCAGTGTCATTATAGC
TCCAGACGCACCCAGGGACATCCCCGCCTGACTCGTGGCCGCCTTGTAGA
GCACGCTCATCAGACTGGAGAAGACGCCGGCGCTGAGGTAGACCGCTAAG
AATTGCTCTTTACCCAACGATACAGCCGCAGCGTTGGCAAAGCTGTGCAT
CACGTACATATTGGCGAAAAGGTGCATAGCCGAGTAATGGCTGAATGTGG
ACAGGAACATGGGCCAGCAGACGACTTTCGCCGCTGGATTGGATGTGAAG
TAGGTAATCATTGTGGATTTCAGAGCGGGCACCCGCCCCATGGCGAAGGC
CACCAAATTGCAGA
BO14019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8972-PA | 1056 | rho-7-RA | 458..1053 | 614..19 | 2955 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-7-RB | 1533 | CG8972-RB | 576..1171 | 614..19 | 2965 | 99.8 | Minus |
rho-7-RA | 1328 | CG8972-RA | 576..1171 | 614..19 | 2965 | 99.8 | Minus |
CG34231-RC | 1494 | CG34231-RC | 1122..1342 | 307..527 | 1105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11987281..11987501 | 307..527 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 11987027..11987227 | 107..307 | 1005 | 100 | Plus |
2R | 25286936 | 2R | 11986875..11986962 | 19..106 | 440 | 100 | Plus |
2R | 25286936 | 2R | 11988002..11988088 | 528..614 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:00:10 has no hits.
BO14019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:13 Download gff for
BO14019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-PA | 459..1056 | 18..613 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:52 Download gff for
BO14019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8972-PA | 459..1056 | 18..613 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:55:53 Download gff for
BO14019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 577..1171 | 19..613 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:19:15 Download gff for
BO14019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 577..1171 | 19..613 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:19:15 Download gff for
BO14019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11987027..11987226 | 107..306 | 100 | <- | Plus |
2R | 11987281..11987501 | 307..527 | 100 | <- | Plus |
2R | 11988002..11988087 | 528..613 | 98 | | Plus |
2R | 11986875..11986962 | 19..106 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:55:53 Download gff for
BO14019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7874380..7874467 | 19..106 | 100 | <- | Plus |
arm_2R | 7874532..7874731 | 107..306 | 100 | <- | Plus |
arm_2R | 7874786..7875006 | 307..527 | 100 | <- | Plus |
arm_2R | 7875507..7875592 | 528..613 | 98 | | Plus |
BO14019.5prime Sequence
679 bp (593 high quality bases) assembled on 2006-05-29
> BO14019.5prime
GAAGTTATCAGTCGACATGCTCATGAGTCGAGCGCTTTGCCGGAGCTGGC
TACCCCAGGTGGCCCGCAGATGTCATGCTAATGTGAATGTGCCAATCCTG
CGGATAAACTCTGGTCATCCGGCGGCGAGGTCATGTCGGCAGATTCACAG
CAACCGAAAACAGAGCAGCAACCTGAAGCCGACGACTGGGGAGCCTGCGG
CAGCGGAGCAGAACACCCCGGTGCCGGTGAACAATGTGATCAAGGCGGTG
GCCTTCACGGGAGCATTTACGGTCGGCTGCTTTGCGGGTGCCACCATCCT
GGAGTACGAGAACACACGTAGCCTAATCCTAGAAAAGGCTCGCCAGGCGA
GATTCGGTTGGTGGCAGAGTCGTTCGCTGGCGGACAGGGATTACTGGACA
CAGATCAAACAAGACATCCGGCGGCACTGGGACTCACTGACACCCGGCGA
CAAGATGTTTGCTCCTATCTTACTCTGCAATTTGGTGGCCTTCGCCATGT
GGCGGGTGCCCGCTCTGAAATCCACAATGATTACCTACTTCACATCCAAT
CCAGCGGCGAAAGTCGTCTGCTGGCCCATGTTCCTGTCCACATTCAGCCA
TTACTCGGCTATGCACCTTTTCGCCAATATGTACGTGATGCACAGCTTTG
CCAACGCTGCGGCTGTATCGTTGGGTAAA
BO14019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8972-PA | 1056 | rho-7-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-7-RB | 1533 | CG8972-RB | 119..781 | 17..679 | 3315 | 100 | Plus |
rho-7-RA | 1328 | CG8972-RA | 119..781 | 17..679 | 3315 | 100 | Plus |
CG34231-RC | 1494 | CG34231-RC | 1224..1342 | 679..561 | 595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11988002..11988296 | 560..266 | 1475 | 100 | Minus |
2R | 25286936 | 2R | 11988362..11988563 | 265..64 | 1010 | 100 | Minus |
2R | 25286936 | 2R | 11987383..11987501 | 679..561 | 595 | 100 | Minus |
2R | 25286936 | 2R | 11988623..11988669 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:26:13 has no hits.
BO14019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:14 Download gff for
BO14019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-PA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:53 Download gff for
BO14019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8972-PA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:13 Download gff for
BO14019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 107..778 | 7..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:21 Download gff for
BO14019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 107..778 | 7..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:21 Download gff for
BO14019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11988002..11988296 | 266..560 | 100 | <- | Minus |
2R | 11988362..11988563 | 64..265 | 100 | <- | Minus |
2R | 11988623..11988681 | 7..63 | 93 | | Minus |
2R | 11987386..11987501 | 561..676 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:13 Download gff for
BO14019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7874891..7875006 | 561..676 | 100 | <- | Minus |
arm_2R | 7875507..7875801 | 266..560 | 100 | <- | Minus |
arm_2R | 7875867..7876068 | 64..265 | 100 | <- | Minus |
arm_2R | 7876128..7876186 | 7..63 | 93 | | Minus |
BO14019.complete Sequence
1087 bp assembled on 2006-10-11
GenBank Submission: FJ632998
> BO14019.complete
GAAGTTATCAGTCGACATGCTCATGAGTCGAGCGCTTTGCCGGAGCTGGC
TACCCCAGGTGGCCCGCAGATGTCATGCTAATGTGAATGTGCCAATCCTG
CGGATAAACTCTGGTCATCCGGCGGCGAGGTCATGTCGGCAGATTCACAG
CAACCGAAAACAGAGCAGCAACCTGAAGCCGACGACTGGGGAGCCTGCGG
CAGCGGAGCAGAACACCCCGGTGCCGGTGAACAATGTGATCAAGGCGGTG
GCCTTCACGGGAGCATTTACGGTCGGCTGCTTTGCGGGTGCCACCATCCT
GGAGTACGAGAACACACGTAGCCTAATCCTAGAAAAGGCTCGCCAGGCGA
GATTCGGTTGGTGGCAGAGTCGTTCGCTGGCGGACAGGGATTACTGGACA
CAGATCAAACAAGACATCCGGCGGCACTGGGACTCACTGACACCCGGCGA
CAAGATGTTTGCTCCTATCTTACTCTGCAATTTGGTGGCCTTCGCCATGT
GGCGGGTGCCCGCTCTGAAATCCACAATGATTACCTACTTCACATCCAAT
CCAGCGGCGAAAGTCGTCTGCTGGCCCATGTTCCTGTCCACATTCAGCCA
TTACTCGGCTATGCACCTTTTCGCCAATATGTACGTGATGCACAGCTTTG
CCAACGCTGCGGCTGTATCGTTGGGTAAAGAGCAATTCTTAGCGGTCTAC
CTCAGCGCCGGCGTCTTCTCCAGTCTGATGAGCGTGCTCTACAAGGCGGC
CACGAGTCAGGCGGGGATGTCCCTGGGTGCGTCTGGAGCTATAATGACAC
TGCTGGCCTATGTATGCACCCAGTATCCGGACACACAACTTAGCATTCTC
TTTCTACCCGCGTTGACATTCTCCGCTGGAGCTGGTATTAAAGTGCTAAT
GGGCATCGACTTTGCTGGCGTCGTGATGGGCTGGAAGTTCTTCGATCACG
CAGCGCATTTGGGCGGCGCCATGTTTGGCATCTTTTGGGCCACGTATGGG
GCACAGATATGGGCAAAGCGCATTGGTCTACTGAATTACTACCATGACCT
GCGCCGGACGAAGCAGAAAGCAAGCTTTCTAGACCAT
BO14019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-7-RB | 1056 | CG8972-PB | 1..1053 | 17..1069 | 5265 | 100 | Plus |
rho-7-RA | 1056 | CG8972-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-7-RB | 1533 | CG8972-RB | 119..1171 | 17..1069 | 5265 | 100 | Plus |
rho-7-RA | 1328 | CG8972-RA | 119..1171 | 17..1069 | 5265 | 100 | Plus |
CG34231-RC | 1494 | CG34231-RC | 1122..1342 | 781..561 | 1105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11988002..11988296 | 560..266 | 1475 | 100 | Minus |
2R | 25286936 | 2R | 11987281..11987501 | 781..561 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 11988362..11988563 | 265..64 | 1010 | 100 | Minus |
2R | 25286936 | 2R | 11987027..11987227 | 981..781 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 11986875..11986962 | 1069..982 | 440 | 100 | Minus |
2R | 25286936 | 2R | 11988623..11988669 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:51:48 has no hits.
BO14019.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:13 Download gff for
BO14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 1..1056 | 17..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:01 Download gff for
BO14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 76..1140 | 7..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:52 Download gff for
BO14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 119..1171 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:13 Download gff for
BO14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 76..1140 | 7..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:45 Download gff for
BO14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-7-RA | 119..1171 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:45 Download gff for
BO14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11986873..11986962 | 982..1071 | 97 | <- | Minus |
2R | 11987027..11987226 | 782..981 | 100 | <- | Minus |
2R | 11987281..11987501 | 561..781 | 100 | <- | Minus |
2R | 11988002..11988296 | 266..560 | 100 | <- | Minus |
2R | 11988362..11988563 | 64..265 | 100 | <- | Minus |
2R | 11988623..11988669 | 17..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:52 Download gff for
BO14019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7874786..7875006 | 561..781 | 100 | <- | Minus |
arm_2R | 7874378..7874467 | 982..1071 | 97 | <- | Minus |
arm_2R | 7874532..7874731 | 782..981 | 100 | <- | Minus |
arm_2R | 7875507..7875801 | 266..560 | 100 | <- | Minus |
arm_2R | 7875867..7876068 | 64..265 | 100 | <- | Minus |
arm_2R | 7876128..7876174 | 17..63 | 100 | | Minus |
BO14019.pep Sequence
Translation from 16 to 1087
> BO14019.pep
MLMSRALCRSWLPQVARRCHANVNVPILRINSGHPAARSCRQIHSNRKQS
SNLKPTTGEPAAAEQNTPVPVNNVIKAVAFTGAFTVGCFAGATILEYENT
RSLILEKARQARFGWWQSRSLADRDYWTQIKQDIRRHWDSLTPGDKMFAP
ILLCNLVAFAMWRVPALKSTMITYFTSNPAAKVVCWPMFLSTFSHYSAMH
LFANMYVMHSFANAAAVSLGKEQFLAVYLSAGVFSSLMSVLYKAATSQAG
MSLGASGAIMTLLAYVCTQYPDTQLSILFLPALTFSAGAGIKVLMGIDFA
GVVMGWKFFDHAAHLGGAMFGIFWATYGAQIWAKRIGLLNYYHDLRRTKQ
KASFLDH
BO14019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-7-PB | 351 | CG8972-PB | 1..351 | 1..351 | 1846 | 100 | Plus |
rho-7-PA | 351 | CG8972-PA | 1..351 | 1..351 | 1846 | 100 | Plus |