Clone Sequence Records
BO14023.3prime Sequence
521 bp (520 high quality bases) assembled on 2006-05-29
> BO14023.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGATCTCGGGAATCTTGAAGCCCGAAG
AGCGCATCTCGCGCAGCATGCACATAGCGATCCCGTGGGCTGCCTCGCAC
TTGTCCTGCTCGGCCTTTAGCTCCTCGTTGCAGGTCTTGACGATGCGCCT
GCCGTCGTCCTCGCGATCCGGGAACATCATGTTGATCATATCGACCGTCT
TGTCCTCGTTATACTGCAACTGATCCTCGGGCATCAGCTCGAACTGCTCC
AGCATGCAGTGGCGGAAGCACTTGGTCTCGTGCTTGGCGTCCTCCTTGTT
CAGCACCATCTCGACGATGTTCTCCCTCGACGGCTTTGGCGTGCAGGCGT
CGCCAAAGGGCTCGATCAGCTCCACCACCTCGTCCACGGTCATGGACCCC
TCCTCCTCGTCCGCCGTCGCCGATCCCATCAGCACGGCGGCGCAGGCCAC
TGCTAGCAGAAGGTTCGTCATCTTCAACGTCGTCGTCATTCGGCTGCACT
GCATCATGTCGACTGATAACT
BO14023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1670-PA | 492 | Obp19b-RA | 1..489 | 507..19 | 2445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19b-RA | 645 | CG1670-RA | 13..501 | 507..19 | 2445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20416993..20417219 | 324..98 | 1135 | 100 | Minus |
X | 23542271 | X | 20416745..20416928 | 507..324 | 920 | 100 | Minus |
X | 23542271 | X | 20417587..20417668 | 100..19 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:59:45 has no hits.
BO14023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:17 Download gff for
BO14023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1670-PA | 1..492 | 16..507 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:56 Download gff for
BO14023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1670-PA | 1..492 | 16..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:57:03 Download gff for
BO14023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19b-RA | 6..507 | 13..514 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:10 Download gff for
BO14023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19b-RA | 6..507 | 13..514 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:10 Download gff for
BO14023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20416738..20416928 | 324..514 | 97 | -> | Minus |
X | 20416994..20417216 | 101..323 | 100 | -> | Minus |
X | 20417587..20417674 | 13..100 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:57:03 Download gff for
BO14023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20287765..20287955 | 324..514 | 97 | -> | Minus |
arm_X | 20288021..20288243 | 101..323 | 100 | -> | Minus |
arm_X | 20288614..20288701 | 13..100 | 96 | | Minus |
BO14023.5prime Sequence
521 bp (520 high quality bases) assembled on 2006-05-29
> BO14023.5prime
GAAGTTATCAGTCGACATGATGCAGTGCAGCCGAATGACGACGACGTTGA
AGATGACGAACCTTCTGCTAGCAGTGGCCTGCGCCGCCGTGCTGATGGGA
TCGGCGACGGCGGACGAGGAGGAGGGGTCCATGACCGTGGACGAGGTGGT
GGAGCTGATCGAGCCCTTTGGCGACGCCTGCACGCCAAAGCCGTCGAGGG
AGAACATCGTCGAGATGGTGCTGAACAAGGAGGACGCCAAGCACGAGACC
AAGTGCTTCCGCCACTGCATGCTGGAGCAGTTCGAGCTGATGCCCGAGGA
TCAGTTGCAGTATAACGAGGACAAGACGGTCGATATGATCAACATGATGT
TCCCGGATCGCGAGGACGACGGCAGGCGCATCGTCAAGACCTGCAACGAG
GAGCTAAAGGCCGAGCAGGACAAGTGCGAGGCAGCCCACGGGATCGCTAT
GTGCATGCTGCGCGAGATGCGCTCTTCGGGCTTCCAGATTCCCGAGATCC
AGGAAGCAAGCTTTCTAGACC
BO14023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1670-PA | 492 | Obp19b-RA | 1..489 | 17..505 | 2395 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19b-RA | 645 | CG1670-RA | 13..501 | 17..505 | 2415 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20416993..20417219 | 200..426 | 1135 | 100 | Plus |
X | 23542271 | X | 20416745..20416928 | 17..200 | 920 | 100 | Plus |
X | 23542271 | X | 20417587..20417668 | 424..505 | 380 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:09:03 has no hits.
BO14023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:18 Download gff for
BO14023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1670-PA | 1..492 | 17..508 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:58 Download gff for
BO14023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1670-PA | 1..492 | 17..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:54:45 Download gff for
BO14023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19b-RA | 6..507 | 10..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:20 Download gff for
BO14023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19b-RA | 6..507 | 10..511 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:20 Download gff for
BO14023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20416738..20416928 | 10..200 | 97 | -> | Plus |
X | 20416994..20417216 | 201..423 | 100 | -> | Plus |
X | 20417587..20417674 | 424..511 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:54:45 Download gff for
BO14023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20287765..20287955 | 10..200 | 97 | -> | Plus |
arm_X | 20288021..20288243 | 201..423 | 100 | -> | Plus |
arm_X | 20288614..20288701 | 424..511 | 94 | | Plus |
BO14023.complete Sequence
523 bp assembled on 2006-10-11
GenBank Submission: FJ632999
> BO14023.complete
GAAGTTATCAGTCGACATGATGCAGTGCAGCCGAATGACGACGACGTTGA
AGATGACGAACCTTCTGCTAGCAGTGGCCTGCGCCGCCGTGCTGATGGGA
TCGGCGACGGCGGACGAGGAGGAGGGGTCCATGACCGTGGACGAGGTGGT
GGAGCTGATCGAGCCCTTTGGCGACGCCTGCACGCCAAAGCCGTCGAGGG
AGAACATCGTCGAGATGGTGCTGAACAAGGAGGACGCCAAGCACGAGACC
AAGTGCTTCCGCCACTGCATGCTGGAGCAGTTCGAGCTGATGCCCGAGGA
TCAGTTGCAGTATAACGAGGACAAGACGGTCGATATGATCAACATGATGT
TCCCGGATCGCGAGGACGACGGCAGGCGCATCGTCAAGACCTGCAACGAG
GAGCTAAAGGCCGAGCAGGACAAGTGCGAGGCAGCCCACGGGATCGCTAT
GTGCATGCTGCGCGAGATGCGCTCTTCGGGCTTCAAGATTCCCGAGATCA
AGGAAGCAAGCTTTCTAGACCAT
BO14023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19b-RA | 492 | CG1670-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19b-RA | 645 | CG1670-RA | 13..501 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20416993..20417219 | 200..426 | 1135 | 100 | Plus |
X | 23542271 | X | 20416745..20416928 | 17..200 | 920 | 100 | Plus |
X | 23542271 | X | 20417587..20417668 | 424..505 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:15:55 has no hits.
BO14023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:14 Download gff for
BO14023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19b-RA | 1..492 | 17..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:02 Download gff for
BO14023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19b-RA | 17..518 | 10..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:22 Download gff for
BO14023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19b-RA | 13..501 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:14 Download gff for
BO14023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19b-RA | 17..518 | 10..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:19 Download gff for
BO14023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19b-RA | 13..501 | 17..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:19 Download gff for
BO14023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20417587..20417668 | 424..507 | 97 | | Plus |
X | 20416994..20417216 | 201..423 | 100 | -> | Plus |
X | 20416745..20416928 | 17..200 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:22 Download gff for
BO14023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20288021..20288243 | 201..423 | 100 | -> | Plus |
arm_X | 20288614..20288695 | 424..507 | 97 | | Plus |
arm_X | 20287772..20287955 | 17..200 | 100 | -> | Plus |
BO14023.pep Sequence
Translation from 16 to 523
> BO14023.pep
MMQCSRMTTTLKMTNLLLAVACAAVLMGSATADEEEGSMTVDEVVELIEP
FGDACTPKPSRENIVEMVLNKEDAKHETKCFRHCMLEQFELMPEDQLQYN
EDKTVDMINMMFPDREDDGRRIVKTCNEELKAEQDKCEAAHGIAMCMLRE
MRSSGFKIPEIKEASFLDH
BO14023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19b-PA | 163 | CG1670-PA | 1..163 | 1..163 | 852 | 100 | Plus |