Clone BO14023 Report

Search the DGRC for BO14023

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptObp19b-RA
Protein status:BO14023.pep: validated full length
Sequenced Size:523

Clone Sequence Records

BO14023.3prime Sequence

521 bp (520 high quality bases) assembled on 2006-05-29

> BO14023.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGATCTCGGGAATCTTGAAGCCCGAAG
AGCGCATCTCGCGCAGCATGCACATAGCGATCCCGTGGGCTGCCTCGCAC
TTGTCCTGCTCGGCCTTTAGCTCCTCGTTGCAGGTCTTGACGATGCGCCT
GCCGTCGTCCTCGCGATCCGGGAACATCATGTTGATCATATCGACCGTCT
TGTCCTCGTTATACTGCAACTGATCCTCGGGCATCAGCTCGAACTGCTCC
AGCATGCAGTGGCGGAAGCACTTGGTCTCGTGCTTGGCGTCCTCCTTGTT
CAGCACCATCTCGACGATGTTCTCCCTCGACGGCTTTGGCGTGCAGGCGT
CGCCAAAGGGCTCGATCAGCTCCACCACCTCGTCCACGGTCATGGACCCC
TCCTCCTCGTCCGCCGTCGCCGATCCCATCAGCACGGCGGCGCAGGCCAC
TGCTAGCAGAAGGTTCGTCATCTTCAACGTCGTCGTCATTCGGCTGCACT
GCATCATGTCGACTGATAACT

BO14023.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1670-PA 492 Obp19b-RA 1..489 507..19 2445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19b-RA 645 CG1670-RA 13..501 507..19 2445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20416993..20417219 324..98 1135 100 Minus
X 23542271 X 20416745..20416928 507..324 920 100 Minus
X 23542271 X 20417587..20417668 100..19 410 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:59:45 has no hits.

BO14023.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:17 Download gff for BO14023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1670-PA 1..492 16..507 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:56 Download gff for BO14023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1670-PA 1..492 16..507 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:57:03 Download gff for BO14023.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp19b-RA 6..507 13..514 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:10 Download gff for BO14023.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp19b-RA 6..507 13..514 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:10 Download gff for BO14023.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20416738..20416928 324..514 97 -> Minus
X 20416994..20417216 101..323 100 -> Minus
X 20417587..20417674 13..100 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:57:03 Download gff for BO14023.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20287765..20287955 324..514 97 -> Minus
arm_X 20288021..20288243 101..323 100 -> Minus
arm_X 20288614..20288701 13..100 96   Minus

BO14023.5prime Sequence

521 bp (520 high quality bases) assembled on 2006-05-29

> BO14023.5prime
GAAGTTATCAGTCGACATGATGCAGTGCAGCCGAATGACGACGACGTTGA
AGATGACGAACCTTCTGCTAGCAGTGGCCTGCGCCGCCGTGCTGATGGGA
TCGGCGACGGCGGACGAGGAGGAGGGGTCCATGACCGTGGACGAGGTGGT
GGAGCTGATCGAGCCCTTTGGCGACGCCTGCACGCCAAAGCCGTCGAGGG
AGAACATCGTCGAGATGGTGCTGAACAAGGAGGACGCCAAGCACGAGACC
AAGTGCTTCCGCCACTGCATGCTGGAGCAGTTCGAGCTGATGCCCGAGGA
TCAGTTGCAGTATAACGAGGACAAGACGGTCGATATGATCAACATGATGT
TCCCGGATCGCGAGGACGACGGCAGGCGCATCGTCAAGACCTGCAACGAG
GAGCTAAAGGCCGAGCAGGACAAGTGCGAGGCAGCCCACGGGATCGCTAT
GTGCATGCTGCGCGAGATGCGCTCTTCGGGCTTCCAGATTCCCGAGATCC
AGGAAGCAAGCTTTCTAGACC

BO14023.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1670-PA 492 Obp19b-RA 1..489 17..505 2395 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19b-RA 645 CG1670-RA 13..501 17..505 2415 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20416993..20417219 200..426 1135 100 Plus
X 23542271 X 20416745..20416928 17..200 920 100 Plus
X 23542271 X 20417587..20417668 424..505 380 97.6 Plus
Blast to na_te.dros performed on 2015-02-10 22:09:03 has no hits.

BO14023.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:18 Download gff for BO14023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1670-PA 1..492 17..508 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:08:58 Download gff for BO14023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1670-PA 1..492 17..508 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:54:45 Download gff for BO14023.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp19b-RA 6..507 10..511 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:20 Download gff for BO14023.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp19b-RA 6..507 10..511 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:20 Download gff for BO14023.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20416738..20416928 10..200 97 -> Plus
X 20416994..20417216 201..423 100 -> Plus
X 20417587..20417674 424..511 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:54:45 Download gff for BO14023.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20287765..20287955 10..200 97 -> Plus
arm_X 20288021..20288243 201..423 100 -> Plus
arm_X 20288614..20288701 424..511 94   Plus

BO14023.complete Sequence

523 bp assembled on 2006-10-11

GenBank Submission: FJ632999

> BO14023.complete
GAAGTTATCAGTCGACATGATGCAGTGCAGCCGAATGACGACGACGTTGA
AGATGACGAACCTTCTGCTAGCAGTGGCCTGCGCCGCCGTGCTGATGGGA
TCGGCGACGGCGGACGAGGAGGAGGGGTCCATGACCGTGGACGAGGTGGT
GGAGCTGATCGAGCCCTTTGGCGACGCCTGCACGCCAAAGCCGTCGAGGG
AGAACATCGTCGAGATGGTGCTGAACAAGGAGGACGCCAAGCACGAGACC
AAGTGCTTCCGCCACTGCATGCTGGAGCAGTTCGAGCTGATGCCCGAGGA
TCAGTTGCAGTATAACGAGGACAAGACGGTCGATATGATCAACATGATGT
TCCCGGATCGCGAGGACGACGGCAGGCGCATCGTCAAGACCTGCAACGAG
GAGCTAAAGGCCGAGCAGGACAAGTGCGAGGCAGCCCACGGGATCGCTAT
GTGCATGCTGCGCGAGATGCGCTCTTCGGGCTTCAAGATTCCCGAGATCA
AGGAAGCAAGCTTTCTAGACCAT

BO14023.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19b-RA 492 CG1670-PA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19b-RA 645 CG1670-RA 13..501 17..505 2445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20416993..20417219 200..426 1135 100 Plus
X 23542271 X 20416745..20416928 17..200 920 100 Plus
X 23542271 X 20417587..20417668 424..505 410 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:15:55 has no hits.

BO14023.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:14 Download gff for BO14023.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19b-RA 1..492 17..508 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:02 Download gff for BO14023.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19b-RA 17..518 10..511 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:22 Download gff for BO14023.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19b-RA 13..501 17..507 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:14 Download gff for BO14023.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19b-RA 17..518 10..511 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:19 Download gff for BO14023.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19b-RA 13..501 17..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:19 Download gff for BO14023.complete
Subject Subject Range Query Range Percent Splice Strand
X 20417587..20417668 424..507 97   Plus
X 20416994..20417216 201..423 100 -> Plus
X 20416745..20416928 17..200 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:22 Download gff for BO14023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20288021..20288243 201..423 100 -> Plus
arm_X 20288614..20288695 424..507 97   Plus
arm_X 20287772..20287955 17..200 100 -> Plus

BO14023.pep Sequence

Translation from 16 to 523

> BO14023.pep
MMQCSRMTTTLKMTNLLLAVACAAVLMGSATADEEEGSMTVDEVVELIEP
FGDACTPKPSRENIVEMVLNKEDAKHETKCFRHCMLEQFELMPEDQLQYN
EDKTVDMINMMFPDREDDGRRIVKTCNEELKAEQDKCEAAHGIAMCMLRE
MRSSGFKIPEIKEASFLDH

BO14023.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19b-PA 163 CG1670-PA 1..163 1..163 852 100 Plus