Clone Sequence Records
BO14025.3prime Sequence
796 bp (669 high quality bases) assembled on 2006-05-29
> BO14025.3prime
ATGGTCTAGAAAGCTTGCATTAATCTTTTTATTATGATCTAAAACATTTT
CCCAGATATCTTCACAAGAATCAATAACAGTTTGCGGCGAGGACAGTTTG
TGCTTCATGAAAAAGCCTTGAATTTGCGCCGGACTAGCGGAGCGTCCAAA
GGAATTCACTCGTTTTCCGAACTCCTCGGCTTTTGTGGTGTCACTGCTGG
CGAAGAAGTTCTTGAACATCTCCTCCAACTGATATTGCGTACAATAGCCA
ATGTATTCCTTTAAATCGATTCTACCAGGACGAACTAAGGCGGGATCGAG
GCGGTCAATGTAGTTTGTTGTCATGAAGACAATTCTGGCCTCCGTGGAGC
CCACACCGTCCAAGCAATTTAGGAGTCCACTGAACGTTATCCTGTTGAGA
CCGTCAAAGGCGGATTTCTGCTGCGGAGTAGCTTCGCGCGAGACGAATGC
TGCGTCGATGTCCTCCAGCAGAATGATACTCTGCTCTGGCGCAACATTCA
GGAGATGATTGAGTCGATCATCGGTGAGGCCTCTTTCGGATAGGTTTAGC
AGGCAGACACTGTACTCCAGTTCGCCCGCCAGGGCGGTTATAAAGCTAGA
CTTGCCACAACCAGGTGGCCCGTACAGAAGGTAGCCTCTTCGGTAGGGGA
TTCCACGTTGCGTATACCACAGAGAGCTCTTAATGAAGTCCTGGCAGTCG
GCAATGATTCCTTGCGAAGTTCCGCGATCCAGCACCACCGATCCCGTGGG
GACGCCTTCTGCGCGGATGTCCGAAGGGTCTCCATTCCGCACCCAT
BO14025.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4908-PB | 1296 | CG4908-RB | 562..1293 | 750..19 | 3585 | 99.5 | Minus |
| CG4908-PA | 1296 | CG4908-RA | 562..1293 | 750..19 | 3585 | 99.5 | Minus |
| CG4908-PB | 1296 | CG4908-RB | 517..564 | 796..749 | 240 | 100 | Minus |
| CG4908-PA | 1296 | CG4908-RA | 517..564 | 796..749 | 240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4908-RA | 1353 | CG4908-RA | 568..1344 | 796..19 | 3820 | 99.5 | Minus |
| CG4908-RB | 1710 | CG4908-RB | 925..1701 | 796..19 | 3820 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10223662..10224438 | 796..19 | 3795 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:33:20 has no hits.
BO14025.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:21 Download gff for
BO14025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-PA | 517..1296 | 16..796 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:03 Download gff for
BO14025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-PA | 517..1296 | 16..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:18:23 Download gff for
BO14025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RB | 925..1707 | 11..796 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:06:45 Download gff for
BO14025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RB | 925..1707 | 11..796 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:06:45 Download gff for
BO14025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10223662..10224444 | 11..796 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:18:23 Download gff for
BO14025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10223662..10224444 | 11..796 | 98 | | Minus |
BO14025.5prime Sequence
802 bp (659 high quality bases) assembled on 2006-05-29
> BO14025.5prime
GAAGTTATCAGTCGACATGACTTTGCCCGATCTTGTAGCTGGACTTTCGT
CAAATCCCTACTTTGGTGCCGGTTTTGGACTATTTGGTGTGGGCGCCGCT
GCTGCCATATTGCGCAAGGGCCTCCAGGGCGGAGTGATACTGTTCCGGCG
GCACTGCATGATTACCCTGGAGGTGCCGTGTCGGGACAAATCCTATCAGT
GGCTGTTAAAATGGATTACGATCAGAGGAGCGCGAAAAACGCAACACTTG
AGCGTGGAGACAAACTTTGTGCAGAACGACAATGGCACAATCAAAACCAG
CTATGACTTCATACCCAGCATAGGCAAGCATCTGTTCCAGTACAAGGGCA
ATTGGATTCAGGTGGAGCGGACCAGGGAACAACAGACATTGGACCTTCAC
ATGGGTGTTCCTTGGGAGACAGTGACGCTTACAGCGTTTGGTAACAATAA
AGGTATATATTTCGATATCCTCGAAGAGGCTAGGCAGCTGGCTCTGGAGG
CCACAGAGGGCAAAACCGTGCTGTACACAGCGATGGGTGCGGAATGGAGA
CCCTTCGGACATCCGCGCAGAAGGCGTCCCACTGGATCGGTGGTGCTGGA
TCGCGGAACTTCGCAACGAATCATTGCCGACTGCCAGGACTTCATTAAGA
GCTCTCTGTGGTATACGCAACGTGGAATCCCCTACCGAAGAGGCTACCTT
CTGTACGGGCCACCTGGTTGTGGCAAGTCTAGCTTTATAACCGCCCTGGC
GGGCGAACTGGAGTACAGTGTCTGCCTGCTAAACCTATCCGAAAGAGGCC
TC
BO14025.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4908-PB | 1296 | CG4908-RB | 1..786 | 17..802 | 3905 | 99.8 | Plus |
| CG4908-PA | 1296 | CG4908-RA | 1..786 | 17..802 | 3905 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4908-RA | 1353 | CG4908-RA | 52..837 | 17..802 | 3915 | 99.9 | Plus |
| CG4908-RB | 1710 | CG4908-RB | 409..1194 | 17..802 | 3915 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10223146..10223931 | 17..802 | 3915 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-02 08:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2202..2293 | 532..627 | 129 | 61.5 | Plus |
BO14025.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:22 Download gff for
BO14025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:04 Download gff for
BO14025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:48:48 Download gff for
BO14025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RB | 401..1194 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:21:27 Download gff for
BO14025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RB | 401..1194 | 9..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:21:27 Download gff for
BO14025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10223133..10223931 | 5..802 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:48:48 Download gff for
BO14025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10223133..10223931 | 5..802 | 99 | | Plus |
BO14025.complete Sequence
1327 bp assembled on 2007-06-22
GenBank Submission: FJ633000
> BO14025.complete
GAAGTTATCAGTCGACATGACTTTGCCCGATCTTGTAGCTGGACTTTCGT
CAAATCCCTACTTTGGTGCCGGTTTTGGACTATTTGGTGTGGGCGCCGCT
GCTGCCATATTGCGCAAGGGCCTCCAGGGCGGAGTGATACTGTTCCGGCG
GCACTGCATGATTACCCTGGAGGTGCCGTGTCGGGACAAATCCTATCAGT
GGCTGTTAAAATGGATTACGATCAGAGGAGCGCGAAAAACGCAACACTTG
AGCGTGGAGACAAACTTTGTGCAGAACGACAATGGCACAATCAAAACCAG
CTATGACTTCATACCCAGCATAGGCAAGCATCTGTTCCAGTACAAGGGCA
ATTGGATTCAGGTGGAGCGGACCAGGGAACAACAGACATTGGACCTTCAC
ATGGGTGTTCCTTGGGAGACAGTGACGCTTACAGCGTTTGGTAACAATAA
AGGTATATATTTCGATATCCTCGAAGAGGCTAGGCAGCTGGCTCTGGAGG
CCACAGAGGGCAAAACCGTGCTGTACACAGCGATGGGTGCGGAATGGAGA
CCCTTCGGACATCCGCGCAGAAGGCGTCCCACTGGATCGGTGGTGCTGGA
TCGCGGAACTTCGCAACGAATCATTGCCGACTGCCAGGACTTCATTAAGA
GCTCTCTGTGGTATACGCAACGTGGAATCCCCTACCGAAGAGGCTACCTT
CTGTACGGGCCACCTGGTTGTGGCAAGTCTAGCTTTATAACCGCCCTGGC
GGGCGAACTGGAGTACAGTGTCTGCCTGCTAAACCTATCCGAAAGAGGCC
TCACCGATGATCGACTCAATCATCTCCTGAATGTTGCGCCAGAGCAGAGT
ATCATTCTGCTGGAGGACATCGACGCAGCATTCGTCTCGCGCGAAGCTAC
TCCGCAGCAGAAATCCGCCTTTGACGGTCTCAACAGGATAACGTTCAGTG
GACTCCTAAATTGCTTGGACGGTGTGGGCTCCACGGAGGCCAGAATTGTC
TTCATGACAACAAACTACATTGACCGCCTCGATCCCGCCTTAGTTCGTCC
TGGTAGAATCGATTTAAAGGAATACATTGGCTATTGTACGCAATATCAGT
TGGAGGAGATGTTCAAGAACTTCTTCGCCAGCAGTGACACCACAAAAGCC
GAGGAGTTCGGAAAACGAGTGAATTCCTTTGGACGCTCCGCTAGTCCGGC
GCAAATTCAAGGCTTTTTCATGAAGCACAAACTGTCCTCGCCGCAAACTG
TTATTGATTCTTGTGAAGATATCTGGGAAAATGTTTTAGATCATAATAAA
AAGATTAATGCAAGCTTTCTAGACCAT
BO14025.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4908-RA | 1296 | CG4908-PA | 1..1293 | 17..1309 | 6450 | 99.9 | Plus |
| CG4908-RB | 1296 | CG4908-PB | 1..1293 | 17..1309 | 6450 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4908-RA | 1353 | CG4908-RA | 52..1344 | 17..1309 | 6450 | 99.9 | Plus |
| CG4908-RB | 1710 | CG4908-RB | 409..1701 | 17..1309 | 6450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10223146..10224438 | 17..1309 | 6450 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-26 15:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2202..2293 | 532..627 | 129 | 61.5 | Plus |
BO14025.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:08 Download gff for
BO14025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RA | 1..1296 | 17..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:39 Download gff for
BO14025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RA | 51..1347 | 17..1313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:36 Download gff for
BO14025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RB | 409..1701 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:08 Download gff for
BO14025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RA | 51..1347 | 17..1313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:35 Download gff for
BO14025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RB | 409..1701 | 17..1311 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:35 Download gff for
BO14025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10223146..10224438 | 17..1311 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:36 Download gff for
BO14025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10223146..10224438 | 17..1311 | 99 | | Plus |
BO14025.pep Sequence
Translation from 16 to 1327
> BO14025.pep
MTLPDLVAGLSSNPYFGAGFGLFGVGAAAAILRKGLQGGVILFRRHCMIT
LEVPCRDKSYQWLLKWITIRGARKTQHLSVETNFVQNDNGTIKTSYDFIP
SIGKHLFQYKGNWIQVERTREQQTLDLHMGVPWETVTLTAFGNNKGIYFD
ILEEARQLALEATEGKTVLYTAMGAEWRPFGHPRRRRPTGSVVLDRGTSQ
RIIADCQDFIKSSLWYTQRGIPYRRGYLLYGPPGCGKSSFITALAGELEY
SVCLLNLSERGLTDDRLNHLLNVAPEQSIILLEDIDAAFVSREATPQQKS
AFDGLNRITFSGLLNCLDGVGSTEARIVFMTTNYIDRLDPALVRPGRIDL
KEYIGYCTQYQLEEMFKNFFASSDTTKAEEFGKRVNSFGRSASPAQIQGF
FMKHKLSSPQTVIDSCEDIWENVLDHNKKINASFLDH
BO14025.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4908-PA | 431 | CG4908-PA | 1..431 | 1..431 | 2270 | 100 | Plus |
| CG4908-PB | 431 | CG4908-PB | 1..431 | 1..431 | 2270 | 100 | Plus |
| CG2658-PC | 819 | CG2658-PC | 358..529 | 208..372 | 200 | 33.1 | Plus |
| CG2658-PA | 819 | CG2658-PA | 358..529 | 208..372 | 200 | 33.1 | Plus |
| Rpt6-PA | 405 | CG1489-PA | 178..313 | 220..351 | 176 | 40.3 | Plus |
