Clone Sequence Records
BO14026.3prime Sequence
717 bp (666 high quality bases) assembled on 2006-05-29
> BO14026.3prime
ATGGTCTAGAAAGCTTGCGTACCTGCTGTTGTTAAACTGCGAATTGATGG
CCGTATTAACGGCCGAGGAGGCTGCTTCCTGGACGTGCTGGTTGCGCAGA
AACTCGGTGGTGAACTCCGCCTGGGCCTTGGCCATACTGGCCCCTGTGCT
GCGGTAGATCGAGTGAATCTTTGTGATCATCAGCACATTGGCCACGGCCA
CCGCTGTGAAACAGAATGCCACGTTCAACAGCAGAATGCCGACGATAATA
CCCGACGCTTGCCCATCGAACTGCCCGATGGCCGTAATAAAGCCACAGTA
GCCCATCTTGTTGAAGCCCACCGCCTGCACAATCGAGTACAGCGTTTGAA
AGAAGTAGATGAAGAAGAAGACCATGAAGTTGAAGCTCGAATCGTTGCGG
AATGCCTTGTACGCCGGTCGGAACCAGCAGACATAGGAGGCGGGCGAGAA
GAGCATCGTGTAGAAGATGGCCAGGAAGAAGGTCTCGAATTCGCCAGCGT
GGAACAGCAAAATTAGACCGCCTATCACGTTGGCCAACAACGTCATGGTG
TAAAAAATCCAAATGTAATACAATCGCTTGACCAGTTTCTGGAACTCGGG
CGGTATCTCCACCTCGAAGTCCTGGTAGAAGCACGGCTTTACACAAAAGT
TATCCGGCAGCGGTGGCCAGTTGTTCAGCTGCGGCACTTTGCCCTGTACC
TGCTGCTCGCGGCGGTC
BO14026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9195-PA | 1032 | Scamp-RA | 331..1029 | 717..19 | 3445 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scamp-RD | 2813 | CG9195-RD | 869..1567 | 717..19 | 3465 | 99.7 | Minus |
Scamp-RC | 2322 | CG9195-RC | 447..1145 | 717..19 | 3465 | 99.7 | Minus |
Scamp-RA | 2391 | CG9195-RA | 447..1145 | 717..19 | 3465 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15447425..15447831 | 19..425 | 2035 | 100 | Plus |
X | 23542271 | X | 15448379..15448541 | 555..717 | 785 | 98.8 | Plus |
X | 23542271 | X | 15447893..15448024 | 423..554 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:33:09 has no hits.
BO14026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:23 Download gff for
BO14026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-PA | 331..1032 | 15..717 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:05 Download gff for
BO14026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9195-PA | 331..1032 | 15..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:18:20 Download gff for
BO14026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 447..1149 | 14..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:06:09 Download gff for
BO14026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 447..1149 | 14..717 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:06:09 Download gff for
BO14026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15447422..15447830 | 15..424 | 99 | <- | Plus |
X | 15447895..15448024 | 425..554 | 100 | <- | Plus |
X | 15448379..15448541 | 555..717 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:18:20 Download gff for
BO14026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15341455..15341863 | 15..424 | 99 | <- | Plus |
arm_X | 15341928..15342057 | 425..554 | 100 | <- | Plus |
arm_X | 15342412..15342574 | 555..717 | 98 | | Plus |
BO14026.5prime Sequence
830 bp (716 high quality bases) assembled on 2006-05-29
> BO14026.5prime
GAAGTTATCAGTCGACATGTCCGGCTCCGGTCTCGACGAGAATCCCTTCG
GGGAGCCCAATCTGGACAATCCGTTTGCGGACCCCGCCATCCAGCAGGCA
CGACGACTCCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATTACAATCC
ATTCGAGGAGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACGAACACGG
CGGCGGTGGTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCAGACCAGT
TCCCTGGGCGCCTCGGCGCCTAGCACCAGCATACAGATCACCTCGGAGGA
GCTGCAGCGCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAACTGGACC
GCCGCGAGCAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAACTGGCCA
CCGCTGCCGGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGGACTTCGA
GGTGGAGATACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTGTATTACA
TTTGGATTTTTTACACCATGACGTTGTTGGCCAACGTGATAGGCGGTCTA
ATTTTGCTGTTCCACGCTGGCGAATTCGAGACCTTCTTCCTGGCCATCTT
CTACACGATGCTCTTCTCGCCCGCCTCCTATGTCTGCTGGTTCCGACCGG
CGTACAAGGCATTCCGCAACGATTCGAGCTTCAACTTCTTGGTCTTCTTC
TTCATCTACTTCTTTCAAACGCTGTACTCGATTGTGCAGGCGGTGGGCTT
TCACAAGATGGGCTACTGTGGCTTTATTACGGCCATCGGGGAGTTCGATG
GGGCAGCGTCGGGTATTATCGGCCGGCTTT
BO14026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9195-PA | 1032 | Scamp-RA | 1..805 | 17..821 | 3875 | 99.2 | Plus |
CG9195-PB | 339 | Scamp-RB | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scamp-RC | 2322 | CG9195-RC | 116..921 | 16..821 | 3940 | 99.3 | Plus |
Scamp-RA | 2391 | CG9195-RA | 116..921 | 16..821 | 3940 | 99.3 | Plus |
Scamp-RD | 2813 | CG9195-RD | 830..1343 | 308..821 | 2480 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15449281..15449509 | 307..79 | 1145 | 100 | Minus |
X | 23542271 | X | 15448379..15448583 | 509..305 | 1025 | 100 | Minus |
X | 23542271 | X | 15447649..15447831 | 821..639 | 825 | 96.7 | Minus |
X | 23542271 | X | 15447893..15448024 | 641..510 | 660 | 100 | Minus |
X | 23542271 | X | 15449704..15449768 | 80..16 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:55:15 has no hits.
BO14026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:24 Download gff for
BO14026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-PA | 1..813 | 17..830 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:07 Download gff for
BO14026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9195-PA | 1..813 | 17..830 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:11:39 Download gff for
BO14026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 113..929 | 12..830 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:43 Download gff for
BO14026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 113..929 | 12..830 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:43 Download gff for
BO14026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15447641..15447830 | 640..830 | 95 | <- | Minus |
X | 15447895..15448024 | 510..639 | 100 | <- | Minus |
X | 15448379..15448580 | 308..509 | 100 | <- | Minus |
X | 15449281..15449508 | 80..307 | 100 | <- | Minus |
X | 15449705..15449771 | 12..79 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:11:39 Download gff for
BO14026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15341674..15341863 | 640..830 | 95 | <- | Minus |
arm_X | 15341928..15342057 | 510..639 | 100 | <- | Minus |
arm_X | 15342412..15342613 | 308..509 | 100 | <- | Minus |
arm_X | 15343314..15343541 | 80..307 | 100 | <- | Minus |
arm_X | 15343738..15343804 | 12..79 | 97 | | Minus |
BO14026.complete Sequence
1063 bp assembled on 2006-10-11
GenBank Submission: FJ633001
> BO14026.complete
GAAGTTATCAGTCGACATGTCCGGCTCCGGTCTCGACGAGAATCCCTTCG
GGGAGCCCAATCTGGACAATCCGTTTGCGGACCCCGCCATCCAGCAGGCA
CGACGACTCCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATTACAATCC
ATTCGAGGAGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACGAACACGG
CGGCGGTGGTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCAGACCAGT
TCCCTGGGCGCCTCGGCGCCTAGCACCAGCATACAGATCACCTCGGAGGA
GCTGCAGCGCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAACTGGACC
GCCGCGAGCAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAACTGGCCA
CCGCTGCCGGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGGACTTCGA
GGTGGAGATACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTGTATTACA
TTTGGATTTTTTACACCATGACGTTGTTGGCCAACGTGATAGGCGGTCTA
ATTTTGCTGTTCCACGCTGGCGAATTCGAGACCTTCTTCCTGGCCATCTT
CTACACGATGCTCTTCTCGCCCGCCTCCTATGTCTGCTGGTTCCGACCGG
CGTACAAGGCATTCCGCAACGATTCGAGCTTCAACTTCATGGTCTTCTTC
TTCATCTACTTCTTTCAAACGCTGTACTCGATTGTGCAGGCGGTGGGCTT
CAACAAGATGGGCTACTGTGGCTTTATTACGGCCATCGGGCAGTTCGATG
GGCAAGCGTCGGGTATTATCGTCGGCATTCTGCTGTTGAACGTGGCATTC
TGTTTCACAGCGGTGGCCGTGGCCAATGTGCTGATGATCACAAAGATTCA
CTCGATCTACCGCAGCACAGGGGCCAGTATGGCCAAGGCCCAGGCGGAGT
TCACCACCGAGTTTCTGCGCAACCAGCACGTCCAGGAAGCAGCCTCCTCG
GCCGTTAATACGGCCATCAATTCGCAGTTTAACAACAGCAGGTACGCAAG
CTTTCTAGACCAT
BO14026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scamp-RC | 1032 | CG9195-PC | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Scamp-RA | 1032 | CG9195-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Scamp-RD | 339 | CG9195-PD | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scamp-RC | 2322 | CG9195-RC | 116..1145 | 16..1045 | 5150 | 100 | Plus |
Scamp-RA | 2391 | CG9195-RA | 116..1145 | 16..1045 | 5150 | 100 | Plus |
Scamp-RD | 2813 | CG9195-RD | 830..1567 | 308..1045 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15447425..15447831 | 1045..639 | 2035 | 100 | Minus |
X | 23542271 | X | 15449281..15449509 | 307..79 | 1145 | 100 | Minus |
X | 23542271 | X | 15448379..15448583 | 509..305 | 1025 | 100 | Minus |
X | 23542271 | X | 15447893..15448024 | 641..510 | 660 | 100 | Minus |
X | 23542271 | X | 15449704..15449768 | 80..16 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:17:10 has no hits.
BO14026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:16 Download gff for
BO14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 1..1032 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:04 Download gff for
BO14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 119..1155 | 12..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:09 Download gff for
BO14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 117..1145 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:16 Download gff for
BO14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 119..1155 | 12..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:55 Download gff for
BO14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scamp-RA | 117..1145 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:55 Download gff for
BO14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15447423..15447830 | 640..1047 | 99 | <- | Minus |
X | 15447895..15448024 | 510..639 | 100 | <- | Minus |
X | 15448379..15448580 | 308..509 | 100 | <- | Minus |
X | 15449281..15449508 | 80..307 | 100 | <- | Minus |
X | 15449705..15449767 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:09 Download gff for
BO14026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15341456..15341863 | 640..1047 | 99 | <- | Minus |
arm_X | 15341928..15342057 | 510..639 | 100 | <- | Minus |
arm_X | 15342412..15342613 | 308..509 | 100 | <- | Minus |
arm_X | 15343314..15343541 | 80..307 | 100 | <- | Minus |
arm_X | 15343738..15343800 | 17..79 | 100 | | Minus |
BO14026.pep Sequence
Translation from 16 to 1063
> BO14026.pep
MSGSGLDENPFGEPNLDNPFADPAIQQARRLQSGAALVSLEDYNPFEEQA
KPQLQINSTNTAAVVQPLSQNIPPPQTSSLGASAPSTSIQITSEELQRRQ
EELDRKAAELDRREQQLQGNVPQLNNWPPLPDNFCVKPCFYQDFEVEIPP
EFQKLVKRLYYIWIFYTMTLLANVIGGLILLFHAGEFETFFLAIFYTMLF
SPASYVCWFRPAYKAFRNDSSFNFMVFFFIYFFQTLYSIVQAVGFNKMGY
CGFITAIGQFDGQASGIIVGILLLNVAFCFTAVAVANVLMITKIHSIYRS
TGASMAKAQAEFTTEFLRNQHVQEAASSAVNTAINSQFNNSRYASFLDH
BO14026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scamp-PC | 343 | CG9195-PC | 1..343 | 1..343 | 1780 | 100 | Plus |
Scamp-PA | 343 | CG9195-PA | 1..343 | 1..343 | 1780 | 100 | Plus |
Scamp-PD | 112 | CG9195-PD | 1..97 | 1..97 | 489 | 100 | Plus |