Clone BO14026 Report

Search the DGRC for BO14026

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptScamp-RA
Protein status:BO14026.pep: validated full length
Sequenced Size:1063

Clone Sequence Records

BO14026.3prime Sequence

717 bp (666 high quality bases) assembled on 2006-05-29

> BO14026.3prime
ATGGTCTAGAAAGCTTGCGTACCTGCTGTTGTTAAACTGCGAATTGATGG
CCGTATTAACGGCCGAGGAGGCTGCTTCCTGGACGTGCTGGTTGCGCAGA
AACTCGGTGGTGAACTCCGCCTGGGCCTTGGCCATACTGGCCCCTGTGCT
GCGGTAGATCGAGTGAATCTTTGTGATCATCAGCACATTGGCCACGGCCA
CCGCTGTGAAACAGAATGCCACGTTCAACAGCAGAATGCCGACGATAATA
CCCGACGCTTGCCCATCGAACTGCCCGATGGCCGTAATAAAGCCACAGTA
GCCCATCTTGTTGAAGCCCACCGCCTGCACAATCGAGTACAGCGTTTGAA
AGAAGTAGATGAAGAAGAAGACCATGAAGTTGAAGCTCGAATCGTTGCGG
AATGCCTTGTACGCCGGTCGGAACCAGCAGACATAGGAGGCGGGCGAGAA
GAGCATCGTGTAGAAGATGGCCAGGAAGAAGGTCTCGAATTCGCCAGCGT
GGAACAGCAAAATTAGACCGCCTATCACGTTGGCCAACAACGTCATGGTG
TAAAAAATCCAAATGTAATACAATCGCTTGACCAGTTTCTGGAACTCGGG
CGGTATCTCCACCTCGAAGTCCTGGTAGAAGCACGGCTTTACACAAAAGT
TATCCGGCAGCGGTGGCCAGTTGTTCAGCTGCGGCACTTTGCCCTGTACC
TGCTGCTCGCGGCGGTC

BO14026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9195-PA 1032 Scamp-RA 331..1029 717..19 3445 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-RD 2813 CG9195-RD 869..1567 717..19 3465 99.7 Minus
Scamp-RC 2322 CG9195-RC 447..1145 717..19 3465 99.7 Minus
Scamp-RA 2391 CG9195-RA 447..1145 717..19 3465 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15447425..15447831 19..425 2035 100 Plus
X 23542271 X 15448379..15448541 555..717 785 98.8 Plus
X 23542271 X 15447893..15448024 423..554 660 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:33:09 has no hits.

BO14026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:23 Download gff for BO14026.3prime
Subject Subject Range Query Range Percent Splice Strand
Scamp-PA 331..1032 15..717 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:05 Download gff for BO14026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9195-PA 331..1032 15..717 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:18:20 Download gff for BO14026.3prime
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 447..1149 14..717 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:06:09 Download gff for BO14026.3prime
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 447..1149 14..717 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:06:09 Download gff for BO14026.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15447422..15447830 15..424 99 <- Plus
X 15447895..15448024 425..554 100 <- Plus
X 15448379..15448541 555..717 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:18:20 Download gff for BO14026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15341455..15341863 15..424 99 <- Plus
arm_X 15341928..15342057 425..554 100 <- Plus
arm_X 15342412..15342574 555..717 98   Plus

BO14026.5prime Sequence

830 bp (716 high quality bases) assembled on 2006-05-29

> BO14026.5prime
GAAGTTATCAGTCGACATGTCCGGCTCCGGTCTCGACGAGAATCCCTTCG
GGGAGCCCAATCTGGACAATCCGTTTGCGGACCCCGCCATCCAGCAGGCA
CGACGACTCCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATTACAATCC
ATTCGAGGAGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACGAACACGG
CGGCGGTGGTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCAGACCAGT
TCCCTGGGCGCCTCGGCGCCTAGCACCAGCATACAGATCACCTCGGAGGA
GCTGCAGCGCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAACTGGACC
GCCGCGAGCAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAACTGGCCA
CCGCTGCCGGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGGACTTCGA
GGTGGAGATACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTGTATTACA
TTTGGATTTTTTACACCATGACGTTGTTGGCCAACGTGATAGGCGGTCTA
ATTTTGCTGTTCCACGCTGGCGAATTCGAGACCTTCTTCCTGGCCATCTT
CTACACGATGCTCTTCTCGCCCGCCTCCTATGTCTGCTGGTTCCGACCGG
CGTACAAGGCATTCCGCAACGATTCGAGCTTCAACTTCTTGGTCTTCTTC
TTCATCTACTTCTTTCAAACGCTGTACTCGATTGTGCAGGCGGTGGGCTT
TCACAAGATGGGCTACTGTGGCTTTATTACGGCCATCGGGGAGTTCGATG
GGGCAGCGTCGGGTATTATCGGCCGGCTTT

BO14026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9195-PA 1032 Scamp-RA 1..805 17..821 3875 99.2 Plus
CG9195-PB 339 Scamp-RB 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-RC 2322 CG9195-RC 116..921 16..821 3940 99.3 Plus
Scamp-RA 2391 CG9195-RA 116..921 16..821 3940 99.3 Plus
Scamp-RD 2813 CG9195-RD 830..1343 308..821 2480 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15449281..15449509 307..79 1145 100 Minus
X 23542271 X 15448379..15448583 509..305 1025 100 Minus
X 23542271 X 15447649..15447831 821..639 825 96.7 Minus
X 23542271 X 15447893..15448024 641..510 660 100 Minus
X 23542271 X 15449704..15449768 80..16 325 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:55:15 has no hits.

BO14026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:24 Download gff for BO14026.5prime
Subject Subject Range Query Range Percent Splice Strand
Scamp-PA 1..813 17..830 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:07 Download gff for BO14026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9195-PA 1..813 17..830 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:11:39 Download gff for BO14026.5prime
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 113..929 12..830 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:43 Download gff for BO14026.5prime
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 113..929 12..830 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:43 Download gff for BO14026.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15447641..15447830 640..830 95 <- Minus
X 15447895..15448024 510..639 100 <- Minus
X 15448379..15448580 308..509 100 <- Minus
X 15449281..15449508 80..307 100 <- Minus
X 15449705..15449771 12..79 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:11:39 Download gff for BO14026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15341674..15341863 640..830 95 <- Minus
arm_X 15341928..15342057 510..639 100 <- Minus
arm_X 15342412..15342613 308..509 100 <- Minus
arm_X 15343314..15343541 80..307 100 <- Minus
arm_X 15343738..15343804 12..79 97   Minus

BO14026.complete Sequence

1063 bp assembled on 2006-10-11

GenBank Submission: FJ633001

> BO14026.complete
GAAGTTATCAGTCGACATGTCCGGCTCCGGTCTCGACGAGAATCCCTTCG
GGGAGCCCAATCTGGACAATCCGTTTGCGGACCCCGCCATCCAGCAGGCA
CGACGACTCCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATTACAATCC
ATTCGAGGAGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACGAACACGG
CGGCGGTGGTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCAGACCAGT
TCCCTGGGCGCCTCGGCGCCTAGCACCAGCATACAGATCACCTCGGAGGA
GCTGCAGCGCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAACTGGACC
GCCGCGAGCAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAACTGGCCA
CCGCTGCCGGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGGACTTCGA
GGTGGAGATACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTGTATTACA
TTTGGATTTTTTACACCATGACGTTGTTGGCCAACGTGATAGGCGGTCTA
ATTTTGCTGTTCCACGCTGGCGAATTCGAGACCTTCTTCCTGGCCATCTT
CTACACGATGCTCTTCTCGCCCGCCTCCTATGTCTGCTGGTTCCGACCGG
CGTACAAGGCATTCCGCAACGATTCGAGCTTCAACTTCATGGTCTTCTTC
TTCATCTACTTCTTTCAAACGCTGTACTCGATTGTGCAGGCGGTGGGCTT
CAACAAGATGGGCTACTGTGGCTTTATTACGGCCATCGGGCAGTTCGATG
GGCAAGCGTCGGGTATTATCGTCGGCATTCTGCTGTTGAACGTGGCATTC
TGTTTCACAGCGGTGGCCGTGGCCAATGTGCTGATGATCACAAAGATTCA
CTCGATCTACCGCAGCACAGGGGCCAGTATGGCCAAGGCCCAGGCGGAGT
TCACCACCGAGTTTCTGCGCAACCAGCACGTCCAGGAAGCAGCCTCCTCG
GCCGTTAATACGGCCATCAATTCGCAGTTTAACAACAGCAGGTACGCAAG
CTTTCTAGACCAT

BO14026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-RC 1032 CG9195-PC 1..1029 17..1045 5145 100 Plus
Scamp-RA 1032 CG9195-PA 1..1029 17..1045 5145 100 Plus
Scamp-RD 339 CG9195-PD 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-RC 2322 CG9195-RC 116..1145 16..1045 5150 100 Plus
Scamp-RA 2391 CG9195-RA 116..1145 16..1045 5150 100 Plus
Scamp-RD 2813 CG9195-RD 830..1567 308..1045 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15447425..15447831 1045..639 2035 100 Minus
X 23542271 X 15449281..15449509 307..79 1145 100 Minus
X 23542271 X 15448379..15448583 509..305 1025 100 Minus
X 23542271 X 15447893..15448024 641..510 660 100 Minus
X 23542271 X 15449704..15449768 80..16 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:17:10 has no hits.

BO14026.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:16 Download gff for BO14026.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 1..1032 17..1049 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:04 Download gff for BO14026.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 119..1155 12..1050 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:09 Download gff for BO14026.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 117..1145 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:16 Download gff for BO14026.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 119..1155 12..1050 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:55 Download gff for BO14026.complete
Subject Subject Range Query Range Percent Splice Strand
Scamp-RA 117..1145 17..1047 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:55 Download gff for BO14026.complete
Subject Subject Range Query Range Percent Splice Strand
X 15447423..15447830 640..1047 99 <- Minus
X 15447895..15448024 510..639 100 <- Minus
X 15448379..15448580 308..509 100 <- Minus
X 15449281..15449508 80..307 100 <- Minus
X 15449705..15449767 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:09 Download gff for BO14026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15341456..15341863 640..1047 99 <- Minus
arm_X 15341928..15342057 510..639 100 <- Minus
arm_X 15342412..15342613 308..509 100 <- Minus
arm_X 15343314..15343541 80..307 100 <- Minus
arm_X 15343738..15343800 17..79 100   Minus

BO14026.pep Sequence

Translation from 16 to 1063

> BO14026.pep
MSGSGLDENPFGEPNLDNPFADPAIQQARRLQSGAALVSLEDYNPFEEQA
KPQLQINSTNTAAVVQPLSQNIPPPQTSSLGASAPSTSIQITSEELQRRQ
EELDRKAAELDRREQQLQGNVPQLNNWPPLPDNFCVKPCFYQDFEVEIPP
EFQKLVKRLYYIWIFYTMTLLANVIGGLILLFHAGEFETFFLAIFYTMLF
SPASYVCWFRPAYKAFRNDSSFNFMVFFFIYFFQTLYSIVQAVGFNKMGY
CGFITAIGQFDGQASGIIVGILLLNVAFCFTAVAVANVLMITKIHSIYRS
TGASMAKAQAEFTTEFLRNQHVQEAASSAVNTAINSQFNNSRYASFLDH

BO14026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Scamp-PC 343 CG9195-PC 1..343 1..343 1780 100 Plus
Scamp-PA 343 CG9195-PA 1..343 1..343 1780 100 Plus
Scamp-PD 112 CG9195-PD 1..97 1..97 489 100 Plus