Clone BO14028 Report

Search the DGRC for BO14028

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptObp57c-RA
Protein status:BO14028.pep: validated full length
Sequenced Size:481

Clone Sequence Records

BO14028.3prime Sequence

479 bp (478 high quality bases) assembled on 2006-05-29

> BO14028.3prime
ATGGTCTAGAAAGCTTGCTTCGTTTAATTTGTTTGTATTTTTACCCGCTT
CGGTGACCTCATCGCTCTGCTCGAAGCTTTCAGTTAGACAAGTCACCATC
TTAAACGCATATTCGCAATGATCTTCTTCCTCATCGTAGATTTTCTTGCA
ATCGTAGAGTATCTCTCGCAGTTCATCGCTCACGGGCTCAATTTGATCAA
TTTTATCCACATCCAAATAGCCATTGGTATCCAAAAGATTTCCCTTCTCC
GCTAGGCAATGGATGAAGCATTTGTATCTTCTGTCGGTATTCTCGAGGTC
ATCCTCTTCGGAGCTGTTGCGATCGATGAGTTCCTGGAATTCAGCCTGGC
TGATGTTATTGCTGGCCAGGCAATCTGACACGTAATTGGTTTCCTCCAGA
AGTGAGAGACTCTGTATGGAGACCACGCTGACAGTCAAGATACATATTAG
CCATAGCTTAAGCATGTCGACTGATAACT

BO14028.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13421-PA 450 Obp57c-RA 1..447 465..19 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57c-RA 557 CG13421-RA 84..530 465..19 2235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20503781..20504175 413..19 1975 100 Minus
2R 25286936 2R 20503667..20503720 465..412 270 100 Minus
Blast to na_te.dros performed on 2015-02-13 14:11:19 has no hits.

BO14028.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:25 Download gff for BO14028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13421-PA 1..450 15..465 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:08 Download gff for BO14028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13421-PA 1..450 15..465 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:02:25 Download gff for BO14028.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..533 15..465 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:54:46 Download gff for BO14028.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..533 15..465 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:54:46 Download gff for BO14028.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20503667..20503720 412..465 100 -> Minus
2R 20503783..20504178 15..411 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:02:25 Download gff for BO14028.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16391172..16391225 412..465 100 -> Minus
arm_2R 16391288..16391683 15..411 99   Minus

BO14028.5prime Sequence

479 bp (478 high quality bases) assembled on 2006-05-29

> BO14028.5prime
GAAGTTATCAGTCGACATGCTTAAGCTATGGCTAATATGTATCTTGACTG
TCAGCGTGGTCTCCATACAGAGTCTCTCACTTCTGGAGGAAACCAATTAC
GTGTCAGATTGCCTGGCCAGCAATAACATCAGCCAGGCTGAATTCCAGGA
ACTCATCGATCGCAACAGCTCCGAAGAGGATGACCTCGAGAATACCGACA
GAAGATACAAATGCTTCATCCATTGCCTAGCGGAGAAGGGAAATCTTTTG
GATACCAATGGCTATTTGGATGTGGATAAAATTGATCAAATTGAGCCCGT
GAGCGATGAACTGCGAGAGATACTCTACGATTGCAAGAAAATCTACGATG
AGGAAGAAGATCATTGCGAATATGCGTTTAAGATGGTGACTTGTCTAACT
GAAAGCTTCGAGCAGAGCGATGAGGTCACCGAAGCGGGTAAAAATACAAA
CAAATTAAACGAAGCAAGCTTTCTAGACC

BO14028.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13421-PA 450 Obp57c-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57c-RA 557 CG13421-RA 84..530 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20503781..20504175 69..463 1975 100 Plus
2R 25286936 2R 20503667..20503720 17..70 270 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:43:47 has no hits.

BO14028.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:26 Download gff for BO14028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13421-PA 1..450 17..467 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:10 Download gff for BO14028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13421-PA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:52 Download gff for BO14028.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..533 17..467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:45:08 Download gff for BO14028.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..533 17..467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:45:08 Download gff for BO14028.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20503667..20503720 17..70 100 -> Plus
2R 20503783..20504178 71..467 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:52 Download gff for BO14028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16391172..16391225 17..70 100 -> Plus
arm_2R 16391288..16391683 71..467 99   Plus

BO14028.complete Sequence

481 bp assembled on 2006-10-11

GenBank Submission: FJ633002

> BO14028.complete
GAAGTTATCAGTCGACATGCTTAAGCTATGGCTAATATGTATCTTGACTG
TCAGCGTGGTCTCCATACAGAGTCTCTCACTTCTGGAGGAAACCAATTAC
GTGTCAGATTGCCTGGCCAGCAATAACATCAGCCAGGCTGAATTCCAGGA
ACTCATCGATCGCAACAGCTCCGAAGAGGATGACCTCGAGAATACCGACA
GAAGATACAAATGCTTCATCCATTGCCTAGCGGAGAAGGGAAATCTTTTG
GATACCAATGGCTATTTGGATGTGGATAAAATTGATCAAATTGAGCCCGT
GAGCGATGAACTGCGAGAGATACTCTACGATTGCAAGAAAATCTACGATG
AGGAAGAAGATCATTGCGAATATGCGTTTAAGATGGTGACTTGTCTAACT
GAAAGCTTCGAGCAGAGCGATGAGGTCACCGAAGCGGGTAAAAATACAAA
CAAATTAAACGAAGCAAGCTTTCTAGACCAT

BO14028.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57c-RA 450 CG13421-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57c-RA 557 CG13421-RA 84..530 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20503781..20504175 69..463 1975 100 Plus
2R 25286936 2R 20503667..20503720 17..70 270 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:43:20 has no hits.

BO14028.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:19 Download gff for BO14028.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RB 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:06 Download gff for BO14028.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RB 53..502 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:20 Download gff for BO14028.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..530 17..465 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:19 Download gff for BO14028.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RB 53..502 17..467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:57 Download gff for BO14028.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57c-RA 84..530 17..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:57 Download gff for BO14028.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20503667..20503720 17..70 100 -> Plus
2R 20503783..20504175 71..465 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:20 Download gff for BO14028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16391172..16391225 17..70 100 -> Plus
arm_2R 16391288..16391680 71..465 99   Plus

BO14028.pep Sequence

Translation from 16 to 481

> BO14028.pep
MLKLWLICILTVSVVSIQSLSLLEETNYVSDCLASNNISQAEFQELIDRN
SSEEDDLENTDRRYKCFIHCLAEKGNLLDTNGYLDVDKIDQIEPVSDELR
EILYDCKKIYDEEEDHCEYAFKMVTCLTESFEQSDEVTEAGKNTNKLNEA
SFLDH

BO14028.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57c-PA 149 CG13421-PA 1..149 1..149 777 100 Plus