Clone Sequence Records
BO14033.3prime Sequence
626 bp (563 high quality bases) assembled on 2006-05-29
> BO14033.3prime
ATGGTCTAGAAAGCTTGCCTCGGACCCGGTGCTCAGCAGCTTCAGGGCCT
TCTGCAGGTTCTCGATGGCTGTCTTGACGTCGTCGTAGTTGAGGGCACTG
CCGGCGTACTTGCAATACTTCTGGGCGGTAATCATTTGGTCGGGAGTGAT
TTGCACCCCGGCCACGGGCACAATGGGCTGGTAAATGGTGGCCGCCGTGG
CCGGATTAGGCTGAGCTGTGGGCACGTAGGGCACAAAGCCGCCCGGCTTC
TCCTCGTCCACCGGTGGACTGGGCAATTTGTTCGGGTTGTTCAGCACCTC
CTCGGCGGTGGGAGGGACCACTCCGGAAGTTGTCGGTGATGATGGAGCTG
GTGGCTGTGAGTCAGGCTCCGGCTTGGTAGGGCGCTGGAGCAGCTGCTCC
CGCGGCGTCCTCCGGCGATGTGTCTGCCGAGGCGTTGGCATTCTCCCCCT
CGAGCTCCGCCTCATCGTCGTCGTCTGGCAAGGGGCCGGGAATCGGTGTC
TCACCGTTCTTCAGGCATTTGTGGATTGTAGGCGGCCTTCCACTTGGCGT
ACTTCCTGTTGTGCAGCGCCTCTTCGCTCAGTTCACCGAAGGTCTGGAGA
ATGTCGTAGAGCACACCACTGGAGTA
BO14033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-PA | 951 | CG7967-RA | 593..948 | 374..19 | 1780 | 100 | Minus |
CG7967-PA | 951 | CG7967-RA | 442..593 | 526..375 | 735 | 99.3 | Minus |
CG7967-PA | 951 | CG7967-RA | 343..442 | 626..527 | 500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-RA | 1257 | CG7967-RA | 444..1049 | 626..19 | 2975 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1651640..1652245 | 19..626 | 2925 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:26:23 has no hits.
BO14033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:29 Download gff for
BO14033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-PA | 344..951 | 18..625 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:14 Download gff for
BO14033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-PA | 344..951 | 18..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:32 Download gff for
BO14033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 445..1049 | 19..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:55:41 Download gff for
BO14033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 445..1049 | 19..625 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:55:41 Download gff for
BO14033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1651640..1652244 | 19..625 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:32 Download gff for
BO14033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1651640..1652244 | 19..625 | 99 | | Plus |
BO14033.complete Sequence
982 bp assembled on 2010-07-02
GenBank Submission: KX799976
> BO14033.complete
GAAGTTATCAGTCGACATGGAGTTTCCGCCTTGTCCTCCCTCGCTGAAGT
CCATCCAACACTTTCTGAAGCTGGCCCAGGAACATGATACCCGGGATGTG
GTCATCGCCTACTGGGCGAGACTCTATGCTCTCCAGGTGGGCCTCAAAGC
CTCCACCCAAACGGGTGAAGAAACCAAACTGCTGCTGGGCATCATGGACT
GGCTGGAGCAGATGAAGAAACAGTATGCTGAGAACGAGGCCATCACCAAC
GAGGTGGCTGCCCAGGCACACATCGAGAACTACGCCTTGAAACTATTCCT
GTACGCCGACAAACAGGATCGCGAGGAGAACTTCGGAAAAAACGTCGTTA
AGGCCTTCTACTCCAGTGGTGTGCTCTACGACATTCTCCAGACCTTCGGT
GAACTGAGCGAAGAGGCGCTGCACAACAGGAAGTACGCCAAGTGGAAGGC
CGCCTACATCCACAATTGCCTGAAGAACGGTGAGACACCGATTCCCGGCC
CCTTGCCAGACGACGACGATGAGGCGGAGCTCGAGGGGGAGAATGCCAAC
GCCTCGGCAGACACATCGCCGGAGGACGCCGCGGGAGCAGCTGCTCCAGC
GCCCTACCAGCCGGAGCCTGACTCACAGCCACCAGCTCCATCATCACCGA
CAACTTCCGGAGTGGTCCCTCCCACCGCCGAGGAGGTGCTGAACAACCCG
AACAAATTGCCCAGTCCACCGGTGGACGAGGAGAAGCCGGGCGGCTTTGT
GCCCTACGTGCCCACAGCTCAGCCTAATCCGGCCACGGCGGCCACCATTT
ACCAGCCCATTGTGCCCGTGGCCGGGGTGCAAATCACTCCCGACCAAATG
ATTACCGCCCAGAAGTATTGCAAGTACGCCGGCAGTGCCCTCAACTACGA
CGACGTCAAGACAGCCATCGAGAACCTGCAGAAGGCCCTGAAGCTGCTGA
GCACCGGGTCCGAGGCAAGCTTTCTAGACCAT
BO14033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-RA | 951 | CG7967-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-RA | 1257 | CG7967-RA | 102..1049 | 17..964 | 4740 | 100 | Plus |
CG7970-RC | 1270 | CG7970-RC | 1..50 | 66..17 | 250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1651640..1652264 | 964..340 | 3125 | 100 | Minus |
3L | 28110227 | 3L | 1652332..1652483 | 339..188 | 760 | 100 | Minus |
3L | 28110227 | 3L | 1652690..1652799 | 126..17 | 550 | 100 | Minus |
3L | 28110227 | 3L | 1652566..1652628 | 189..127 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:20:26 has no hits.
BO14033.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:49 Download gff for
BO14033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 120..1067 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:58 Download gff for
BO14033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 102..1049 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:07 Download gff for
BO14033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7967-RA | 102..1049 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:07 Download gff for
BO14033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1651638..1652264 | 340..966 | 99 | <- | Minus |
3L | 1652332..1652482 | 189..339 | 100 | <- | Minus |
3L | 1652567..1652628 | 127..188 | 100 | <- | Minus |
3L | 1652690..1652799 | 17..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:58 Download gff for
BO14033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1651638..1652264 | 340..966 | 99 | <- | Minus |
arm_3L | 1652332..1652482 | 189..339 | 100 | <- | Minus |
arm_3L | 1652567..1652628 | 127..188 | 100 | <- | Minus |
arm_3L | 1652690..1652799 | 17..126 | 100 | | Minus |
BO14033.pep Sequence
Translation from 16 to 982
> BO14033.pep
MEFPPCPPSLKSIQHFLKLAQEHDTRDVVIAYWARLYALQVGLKASTQTG
EETKLLLGIMDWLEQMKKQYAENEAITNEVAAQAHIENYALKLFLYADKQ
DREENFGKNVVKAFYSSGVLYDILQTFGELSEEALHNRKYAKWKAAYIHN
CLKNGETPIPGPLPDDDDEAELEGENANASADTSPEDAAGAAAPAPYQPE
PDSQPPAPSSPTTSGVVPPTAEEVLNNPNKLPSPPVDEEKPGGFVPYVPT
AQPNPATAATIYQPIVPVAGVQITPDQMITAQKYCKYAGSALNYDDVKTA
IENLQKALKLLSTGSEASFLDH
BO14033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7967-PA | 316 | CG7967-PA | 1..316 | 1..316 | 1661 | 100 | Plus |