Clone Sequence Records
BO14037.complete Sequence
2887 bp assembled on 2010-04-13
GenBank Submission: KX793897
> BO14037.complete
GAAGTTATCAGTCGACATGCTGCTCAGCGAGACCCATTTCTGGACCACGT
TGCGCGAGGATGTGGTGCGGATCAAGAGCCAGGACCTGGGCGCCTTTCGC
TACCTCAGGCAGCGCGACAAGGAGCAGGAGCAGCAGGACCTCGCCTGCCT
GGCCAAGCGAGACTATACGGAGCGTCGCAATGGACTGGCCGTGCTGAAGA
ACTCTGGTCGCAAGTCCACCGGCCGCTTGAAGGACAACCTCAAGAAGCTG
GAGGACCTGCTGCGCCAGCACAGGATCATCCACTCCGAGTGGCAGGACGC
GGCGCAGGTGCTGCTCCTCTTCTCACACGGCCTGATCGCCCACATCTGCG
TGGACATCTACACGGGCGACATTCTGCGCATGGTCTTCGAGAAGTACCTG
GTGGGCAAGCTCGCCTCCGAGGTCATTACGGATGCTTTTTTCACCCGTTC
CCACATCGTCTTGGCCTACAATACCAACCAGCTGACGGTGGTGCATCTGC
AGAGGCCTAATGCTCGCTCCCAGGGACCGGAGAAGATCGCCAATATGGAT
CCGCGCATCTTCCACGTGATCATACCGGGCGCCACAGAGCGCAAACTATC
CCGCCACCTCACAGTTAACGCCAGCTTCGATCTGTTCGTGGTTTGGACGC
AGTCCTCGCAGAACGAGGTGTATCCCTGGAGGCCAACGATAAGGGACCAA
GATCGTGCCAACATACATGTGTTCAAGATCAAGGGCTTGCAGCTGGAATC
GATTGCCTATTGCTGGTCGGAGAACGATCCGCTGTGCGTGGACTTCCTGC
GAAGCAGCGAGAGCCAGATCATCACCCTGGAGCAGAAGGTTTCCCGCAAG
GGCGACATAAGCGCAGAAATCTGCTCCTACGAACTGGCCGCCGGCAAGAT
GCAGCGCACCGCCATTACCTCCATTCCAATGGGCGCCCAGATCTGCTCCT
TTGCCTTCAGCCCCGACCAGGAGAAGCTCTTCCTGGGCAGCGTCGATCGC
AATATCTGCCTGCACGACCTGGTCCAGCAGTCGACAAAGTACGCCAACCA
GATTGAGATCGTGCCCAATCAGTGCGCCTGGCACTGCGACTCCGCCATGC
TTTGCGTGGCCAACGAGCGATCGGTGCTGCAGTGCTTCGACCTGGCGCTG
GCCACCATTGGCCATCAGCTGGTTAGCGAGAATGTGACGCCGTCCAGCTT
GCTGGATCTGTCGCACTACTTCGTGGCCCAGCCAACGCTGCTGAGTGTCG
CCTTCAGCCGAAAGCCAGATTTGTCCACTTTTAAGCACACCTACGCCCAG
ACGGATTGCCTGCTGCTGCTGGTGTACGAACAGGGACCTTTGGCCTGCAT
GCGCATCTTTGGCGGCACCGGAATGCGCGGCGACATCCACAATTCCGGAC
TCACTGCGGACGTCATTGCGGACAAGTATCTGCGGCTGCAGCAGCCGGAC
AGAGCGGTCAATGTCCTGGCCGCCCTCAACTGGGAGACCTACGGAGCCAT
GTGCCTGATTACGCTGCACAAGATAGCCAACTATGTGTTCTTCGGCGGTG
ACCAGCGACGACCTCGCATCGAGCTGATGGCCAGAGCGTTGAAGACATTC
GCCCACACGCTTTCCGAGGAGACGAAGGACGAGTTCAGCGATCAGGTGTA
CGATCTGAAGCGCCGCTTCTGCTTCTATCTGCTGCGCAAAAACCTCTTCG
CTGAGGCCTTCGAAATCGCCCAGGATGTGGCCGACTATGACATCTTCATG
GACCTGTACAACCTAACCAAGTGCATCTCAAGCCTGAGTGAGTTCGCCCA
GGTGGCCTTCAGTCAGGCAGCTGCCATAATCCACGAGGAAGATCGCGCCA
ACGGCAATCTCAGCCTGACCTGTGACCTGCGCTCGGAGTCGGCCTGTTCG
CTGTCCACCTGCTCGGACATGTTGCGCGGTCAGGGAGCAGGAACTGCCCC
CGAAACCGGACTAGGCGCAAGTCAGCCACAAAGCCAGCAGGTCCTGAAGA
ACTATGTGCCACCGCTGCCCTCGTTCAAGTCGAAGGTATTCAACGCTGAG
ATGATCAAGATCAACATACCGAAACCGGAACTGAGGCCGCCCTTGCCGAA
GGTTTCAATAGCGCCGCCAACATCTTCGCTGGCGAGTCTAACCCTGAAGT
CCAACAGTAGTCTGCAGCAGGCGCCCGCAAAGAGTCTGCATCCAAATGGC
AATTTGTGGTCCCAGGACGTGCCGGATCAGACGGTGGGTCTGCCTATGGC
TAGTAGTCCACTTCCTCGTCTTCCGCCTTCAAACATTCCAGATCAGAGCG
CCCAGCTGGGTCAGTTCAGCACGATGCCAGCTTCGCCTCCGCCGACAGGG
TCCTATCAGCCCAAGTTTTATCAACATCCGCTTGTCTCTGGCAATATTCC
CGCCATGCTGCCATCGCTCACCAGCGAGGACTACCAGAAGCGCCTGCTGC
AAAAGAAACCCACCGCATCCATATTGTCCAACCCGGCGAATCCAGCACCC
ACCAACGGAGAAGCACCCGCCACGCCCGCAAAGTCACAAACGGCCGAAAA
GAACAAAGTCAAGTTCTCGGATACAATTCAAGTGGCGGTGGTGCCAGAAA
TTCCTCGCAAGGAAAAGCCAATGCCACCCAAGAGAAATGGTTACTCCAGG
CCCGCTGCGCGACATCTGACAAATCCTAAAAAGGAGCTCGCAGACAGCCT
GCCGCTCTGTCATCCGAACGACGAGTATCTAAAGGATTTCAACCCCATTA
CGACCAATGTGACTAAGCCGCCCATCCGACGACGCGAGGAAGAACCCAAG
AGCAGCAGCAAGGGCGGCAACTCCTCCTCCTCCTCGTCGTCCATCAAGGT
GGTCCACTTCGGCGTGGTCGCAAGCTTTCTAGACCAT
BO14037.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frtz-RB | 2856 | CG17657-PB | 1..2853 | 17..2869 | 14265 | 100 | Plus |
| frtz-RA | 2856 | CG17657-PA | 1..2853 | 17..2869 | 14265 | 100 | Plus |
| frtz-RD | 2841 | CG17657-PD | 1..2838 | 17..2869 | 14005 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frtz-RB | 3303 | CG17657-RB | 296..3148 | 17..2869 | 14265 | 100 | Plus |
| frtz-RA | 3601 | CG17657-RA | 296..3148 | 17..2869 | 14265 | 100 | Plus |
| frtz-RD | 3586 | CG17657-RD | 296..3133 | 17..2869 | 14005 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1713167..1714118 | 1686..735 | 4760 | 100 | Minus |
| 2L | 23513712 | 2L | 1712596..1713109 | 2199..1686 | 2570 | 100 | Minus |
| 2L | 23513712 | 2L | 1715139..1715556 | 434..17 | 2090 | 100 | Minus |
| 2L | 23513712 | 2L | 1712144..1712543 | 2597..2198 | 2000 | 100 | Minus |
| 2L | 23513712 | 2L | 1714173..1714474 | 735..434 | 1510 | 100 | Minus |
| 2L | 23513712 | 2L | 1711928..1712087 | 2756..2597 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 1711755..1711867 | 2869..2757 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:32:35 has no hits.
BO14037.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:57 Download gff for
BO14037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 306..3158 | 17..2871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:59 Download gff for
BO14037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 296..3148 | 17..2871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:27 Download gff for
BO14037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 296..3148 | 17..2871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:27 Download gff for
BO14037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1711753..1711867 | 2757..2871 | 98 | <- | Minus |
| 2L | 1711928..1712087 | 2597..2756 | 100 | <- | Minus |
| 2L | 1712145..1712542 | 2199..2596 | 100 | <- | Minus |
| 2L | 1712597..1713108 | 1687..2198 | 100 | <- | Minus |
| 2L | 1713167..1714117 | 736..1686 | 100 | <- | Minus |
| 2L | 1714173..1714473 | 435..735 | 100 | <- | Minus |
| 2L | 1715139..1715556 | 17..434 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:59 Download gff for
BO14037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1711753..1711867 | 2757..2871 | 98 | <- | Minus |
| arm_2L | 1711928..1712087 | 2597..2756 | 100 | <- | Minus |
| arm_2L | 1712145..1712542 | 2199..2596 | 100 | <- | Minus |
| arm_2L | 1712597..1713108 | 1687..2198 | 100 | <- | Minus |
| arm_2L | 1713167..1714117 | 736..1686 | 100 | <- | Minus |
| arm_2L | 1714173..1714473 | 435..735 | 100 | <- | Minus |
| arm_2L | 1715139..1715556 | 17..434 | 100 | | Minus |
BO14037.3prime Sequence
608 bp (605 high quality bases) assembled on 2006-05-29
> BO14037.3prime
ATGGTCTAGAAAGCTTGCGACCACGCCGAAGTGGACCACCTTGATGGACG
ACGAGGAGGAGGAGGAGTTGCCGCCCTTGCTGCTGCTCTTGGGTTCTTCC
TCGCGTCGTCGGATGGGCGGCTTAGTCACATTGGTCGTAATGGGGTTGAA
ATCCTTTAGATACTCGTCGTTCGGATGACAGAGCGGCAGGCTGTCTGCGA
GCTCCTTTTTAGGATTTGTCAGATGTCGCGCAGCGGGCCTGGAGTAACCA
TTTCTCTTGGGTGGCATTGGCTTTTCCTTGCGAGGAATTTCTGGCACCAC
CGCCACTTGAATTGTATCCGAGAACTTGACTTTGTTCTTTTCGGCCGTTT
GTGACTTTGCGGGCGTGGCGGGTGCTTCTCCGTTGGTGGGTGCTGGATTC
GCCGGGTTGGACAATATGGATGCGGTGGGTTTCTTTTGCAGCAGGCGCTT
CTGGTAGTCCTCGCTGGTGAGCGATGGCAGCATGGCGGGAATATTGCCAG
AGACAAGCGGATGTTGATAAAACTTGGGCTGATAGGACCCTGTCGGCGGA
GGCGAAGCTGGCATCGTGCTGAACTGACCCAGCTGGGCGCTCTGATCTGG
AATGTTTG
BO14037.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17657-PA | 2856 | CG17657-RA | 2264..2853 | 608..19 | 2950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frtz-RD | 3586 | CG17657-RD | 2544..3133 | 608..19 | 2950 | 100 | Minus |
| frtz-RB | 3303 | CG17657-RB | 2559..3148 | 608..19 | 2950 | 100 | Minus |
| frtz-RA | 3601 | CG17657-RA | 2559..3148 | 608..19 | 2950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 01:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1712144..1712461 | 291..608 | 1590 | 100 | Plus |
| 2L | 23513712 | 2L | 1711928..1712087 | 132..291 | 800 | 100 | Plus |
| 2L | 23513712 | 2L | 1711755..1711867 | 19..131 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 01:06:17 has no hits.
BO14037.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:32 Download gff for
BO14037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17657-PA | 2264..2856 | 15..608 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:18 Download gff for
BO14037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17657-PA | 2264..2856 | 15..608 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 15:10:08 Download gff for
BO14037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 2559..3151 | 15..608 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:26:35 Download gff for
BO14037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 2559..3151 | 15..608 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:26:35 Download gff for
BO14037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1711928..1712087 | 132..291 | 100 | <- | Plus |
| 2L | 1711752..1711867 | 15..131 | 98 | <- | Plus |
| 2L | 1712145..1712461 | 292..608 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:10:08 Download gff for
BO14037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1711752..1711867 | 15..131 | 98 | <- | Plus |
| arm_2L | 1711928..1712087 | 132..291 | 100 | <- | Plus |
| arm_2L | 1712145..1712461 | 292..608 | 100 | | Plus |
BO14037.5prime Sequence
768 bp (706 high quality bases) assembled on 2006-05-29
> BO14037.5prime
GAAGTTATCAGTCGACATGCTGCTCAGCGAGACCCATTTCTGGACCACGT
TGCGCGAGGATGTGGTGCGGATCAAGAGCCAGGACCTGGGCGCCTTTCGC
TACCTCAGGCAGCGCGACAAGGAGCAGGAGCAGCAGGACCTCGCCTGCCT
GGCCAAGCGAGACTATACGGAGCGTCGCAATGGACTGGCCGTGCTGAAGA
ACTCTGGTCGCAAGTCCACCGGCCGCTTGAAGGACAACCTCAAGAAGCTG
GAGGACCTGCTGCGCCAGCACAGGATCATCCACTCCGAGTGGCAGGACGC
GGCGCAGGTGCTGCTCCTCTTCTCACACGGCCTGATCGCCCACATCTGCG
TGGACATCTACACGGGCGACATTCTGCGCATGGTCTTCGAGAAGTACCTG
GTGGGCAAGCTCGCCTCCGAGGTCATTACGGATGCTTTTTTCACCCGTTC
CCACATCGTCTTGGCCTACAATACCAACCAGCTGACGGTGGTGCATCTGC
AGAGGCCTAATGCTCGCTCCCAGGGACCGGAGAAGATCGCCAATATGGAT
CCGCGCATCTTCCACGTGATCATACCGGGCGCCACAGAGCGCAAACTATC
CCGCCACCTCACAGTTAACGCCAGCTTCGATCTGTTCGTGGTTTGGACGC
AGTCCTCGCAGAACGAGGTGTATCCCTGGAGGCCAACGATAAGGGACCCA
GATCGTGCCAACATACATGTGTTCAAGATCAAGGGCTTGCCGCTGGAATC
GATTGCCTATTGCTGGTC
BO14037.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17657-PA | 2856 | CG17657-RA | 1..752 | 17..768 | 3710 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frtz-RD | 3586 | CG17657-RD | 296..1047 | 17..768 | 3730 | 99.7 | Plus |
| frtz-RB | 3303 | CG17657-RB | 296..1047 | 17..768 | 3730 | 99.7 | Plus |
| frtz-RA | 3601 | CG17657-RA | 296..1047 | 17..768 | 3730 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1715139..1715556 | 434..17 | 2090 | 100 | Minus |
| 2L | 23513712 | 2L | 1714173..1714474 | 735..434 | 1495 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:20:20 has no hits.
BO14037.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:33 Download gff for
BO14037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17657-PA | 1..752 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:19 Download gff for
BO14037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17657-PA | 1..752 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:44:44 Download gff for
BO14037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 296..1047 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:44 Download gff for
BO14037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 296..1047 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:44 Download gff for
BO14037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1714085..1714117 | 736..768 | 96 | <- | Minus |
| 2L | 1714173..1714473 | 435..735 | 99 | <- | Minus |
| 2L | 1715139..1715556 | 17..434 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:44:44 Download gff for
BO14037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1714085..1714117 | 736..768 | 96 | <- | Minus |
| arm_2L | 1714173..1714473 | 435..735 | 99 | <- | Minus |
| arm_2L | 1715139..1715556 | 17..434 | 100 | | Minus |
BO14037.pep Sequence
Translation from 16 to 2887
> BO14037.pep
MLLSETHFWTTLREDVVRIKSQDLGAFRYLRQRDKEQEQQDLACLAKRDY
TERRNGLAVLKNSGRKSTGRLKDNLKKLEDLLRQHRIIHSEWQDAAQVLL
LFSHGLIAHICVDIYTGDILRMVFEKYLVGKLASEVITDAFFTRSHIVLA
YNTNQLTVVHLQRPNARSQGPEKIANMDPRIFHVIIPGATERKLSRHLTV
NASFDLFVVWTQSSQNEVYPWRPTIRDQDRANIHVFKIKGLQLESIAYCW
SENDPLCVDFLRSSESQIITLEQKVSRKGDISAEICSYELAAGKMQRTAI
TSIPMGAQICSFAFSPDQEKLFLGSVDRNICLHDLVQQSTKYANQIEIVP
NQCAWHCDSAMLCVANERSVLQCFDLALATIGHQLVSENVTPSSLLDLSH
YFVAQPTLLSVAFSRKPDLSTFKHTYAQTDCLLLLVYEQGPLACMRIFGG
TGMRGDIHNSGLTADVIADKYLRLQQPDRAVNVLAALNWETYGAMCLITL
HKIANYVFFGGDQRRPRIELMARALKTFAHTLSEETKDEFSDQVYDLKRR
FCFYLLRKNLFAEAFEIAQDVADYDIFMDLYNLTKCISSLSEFAQVAFSQ
AAAIIHEEDRANGNLSLTCDLRSESACSLSTCSDMLRGQGAGTAPETGLG
ASQPQSQQVLKNYVPPLPSFKSKVFNAEMIKINIPKPELRPPLPKVSIAP
PTSSLASLTLKSNSSLQQAPAKSLHPNGNLWSQDVPDQTVGLPMASSPLP
RLPPSNIPDQSAQLGQFSTMPASPPPTGSYQPKFYQHPLVSGNIPAMLPS
LTSEDYQKRLLQKKPTASILSNPANPAPTNGEAPATPAKSQTAEKNKVKF
SDTIQVAVVPEIPRKEKPMPPKRNGYSRPAARHLTNPKKELADSLPLCHP
NDEYLKDFNPITTNVTKPPIRRREEEPKSSSKGGNSSSSSSSIKVVHFGV
VASFLDH
BO14037.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frtz-PB | 951 | CG17657-PB | 1..951 | 1..951 | 4934 | 100 | Plus |
| frtz-PA | 951 | CG17657-PA | 1..951 | 1..951 | 4934 | 100 | Plus |
| frtz-PD | 946 | CG17657-PD | 1..946 | 1..951 | 4887 | 99.5 | Plus |
