Clone BO14038 Report

Search the DGRC for BO14038

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCys-RA
Protein status:BO14038.pep: validated full length
Sequenced Size:412

Clone Sequence Records

BO14038.3prime Sequence

412 bp (411 high quality bases) assembled on 2006-05-29

> BO14038.3prime
ATGGTCTAGAAAGCTTGCCCAGGTGCGGTCCAGTTCGCCATCGTCACCAG
AGCACTTGATCTTGATGTTGGTGCCGTTCTCCTTGAGCCATGGCTGAGTC
CAGATCTTCACGGTGCACTGCTTTTTGTCGGATCCATTGTCAAGTTCCAC
CTCGTAGGTGTTAAGACTTCCAGCTACGACCTGACCCGTCACAGAGGTCA
CATTGATTGCCTTGTAGCTGGGACCATCTCCGGTGGCCAACTGTGCGAGA
GTGGCATCCAGAAGTTCCAGAGCCTCCTTCCTGCTGTTTCCCTCCAACTG
GCTGACACCGCCTACCACCTGCTCATCGGCTGCTTGGGTGGCAATCAAGC
TGACGAGAACCAGACCCAAAATACACCAAAGATTTTACTACGTTCATGTC
GACTGATAACTT

BO14038.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8050-PA 381 Cys-RA 21..378 376..19 1790 100 Minus
CG8066-PA 315 CG8066-RA 52..206 282..128 450 91.6 Minus
CG8066-PA 315 CG8066-RA 242..280 92..54 170 97.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cys-RA 484 CG8050-RA 35..414 399..19 1880 99.7 Minus
CG8066-RB 703 CG8066-RB 81..374 315..19 860 87 Minus
CG8066-RA 1173 CG8066-RA 81..374 315..19 860 87 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14569173..14569365 19..211 965 100 Plus
3R 32079331 3R 14569423..14569610 211..399 895 99.5 Plus
3R 32079331 3R 14568410..14568599 19..211 525 86 Plus
3R 32079331 3R 14568663..14568767 211..315 315 86.7 Plus
Blast to na_te.dros performed on 2015-02-12 18:47:15 has no hits.

BO14038.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:34 Download gff for BO14038.3prime
Subject Subject Range Query Range Percent Splice Strand
Cys-PA 1..381 18..397 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:20 Download gff for BO14038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8050-PA 1..381 18..397 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:44 Download gff for BO14038.3prime
Subject Subject Range Query Range Percent Splice Strand
Cys-RA 31..423 11..404 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:54 Download gff for BO14038.3prime
Subject Subject Range Query Range Percent Splice Strand
Cys-RA 31..423 11..404 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:54 Download gff for BO14038.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14569164..14569365 11..211 98 <- Plus
3R 14569424..14569614 212..404 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:44 Download gff for BO14038.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10394886..10395087 11..211 98 <- Plus
arm_3R 10395146..10395336 212..404 98   Plus

BO14038.5prime Sequence

410 bp (409 high quality bases) assembled on 2006-05-29

> BO14038.5prime
GAAGTTATCAGTCGACATGAACGTAGTAAAATCTTTGTGTATTTTGGGTC
TGGTTCTCGTCAGCTTGATTGCCACCCAAGCAGCCGATGAGCAGGTGGTA
GGCGGTGTCAGCCAGTTGGAGGGAAACAGCAGGAAGGAGGCTCTGGAACT
TCTGGATGCCACTCTCGCACAGTTGGCCACCGGAGATGGTCCCAGCTACA
AGGCAATCAATGTGACCTCTGTGACGGGTCAGGTCGTAGCTGGAAGTCTT
AACACCTACGAGGTGGAACTTGACAATGGATCCGACAAAAAGCAGTGCAC
CGTGAAGATCTGGACTCAGCCATGGCTCAAGGAGAACGGCACCAACATCA
AGATCAAGTGCTCTGGTGACGATGGCGAACTGGACCGCACCTGGGCAAGC
TTTCTAGACC

BO14038.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8050-PA 381 Cys-RA 1..378 17..394 1890 100 Plus
CG8066-PA 315 CG8066-RA 52..206 131..285 450 91.6 Plus
CG8066-PA 315 CG8066-RA 242..280 321..359 170 97.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cys-RA 484 CG8050-RA 35..414 15..394 1900 100 Plus
CG8066-RB 703 CG8066-RB 81..374 98..394 860 87 Plus
CG8066-RA 1173 CG8066-RA 81..374 98..394 860 87 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14569173..14569365 394..202 965 100 Minus
3R 32079331 3R 14569423..14569610 202..15 940 100 Minus
3R 32079331 3R 14568410..14568599 394..202 525 86 Minus
3R 32079331 3R 14568663..14568767 202..98 315 86.7 Minus
Blast to na_te.dros performed on 2015-02-11 16:15:04 has no hits.

BO14038.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:35 Download gff for BO14038.5prime
Subject Subject Range Query Range Percent Splice Strand
Cys-PA 1..381 17..395 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:22 Download gff for BO14038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8050-PA 1..381 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:47 Download gff for BO14038.5prime
Subject Subject Range Query Range Percent Splice Strand
Cys-RA 31..423 10..402 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:47 Download gff for BO14038.5prime
Subject Subject Range Query Range Percent Splice Strand
Cys-RA 31..423 10..402 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:47 Download gff for BO14038.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14569164..14569365 202..402 98 <- Minus
3R 14569424..14569614 10..201 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:47 Download gff for BO14038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10394886..10395087 202..402 98 <- Minus
arm_3R 10395146..10395336 10..201 98   Minus

BO14038.complete Sequence

412 bp assembled on 2006-10-11

GenBank Submission: FJ633003

> BO14038.complete
GAAGTTATCAGTCGACATGAACGTAGTAAAATCTTTGTGTATTTTGGGTC
TGGTTCTCGTCAGCTTGATTGCCACCCAAGCAGCCGATGAGCAGGTGGTA
GGCGGTGTCAGCCAGTTGGAGGGAAACAGCAGGAAGGAGGCTCTGGAACT
TCTGGATGCCACTCTCGCACAGTTGGCCACCGGAGATGGTCCCAGCTACA
AGGCAATCAATGTGACCTCTGTGACGGGTCAGGTCGTAGCTGGAAGTCTT
AACACCTACGAGGTGGAACTTGACAATGGATCCGACAAAAAGCAGTGCAC
CGTGAAGATCTGGACTCAGCCATGGCTCAAGGAGAACGGCACCAACATCA
AGATCAAGTGCTCTGGTGACGATGGCGAACTGGACCGCACCTGGGCAAGC
TTTCTAGACCAT

BO14038.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cys-RA 381 CG8050-PA 1..378 17..394 1890 100 Plus
CG8066-RB 315 CG8066-PB 19..312 98..394 835 86.2 Plus
CG8066-RA 315 CG8066-PA 19..312 98..394 835 86.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Cys-RA 484 CG8050-RA 35..414 15..394 1900 100 Plus
CG8066-RB 703 CG8066-RB 81..374 98..394 835 86.2 Plus
CG8066-RA 1173 CG8066-RA 81..374 98..394 835 86.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14569173..14569365 394..202 965 100 Minus
3R 32079331 3R 14569423..14569610 202..15 940 100 Minus
3R 32079331 3R 14568410..14568599 394..202 525 86 Minus
3R 32079331 3R 14568663..14568767 202..98 315 86.7 Minus
Blast to na_te.dros performed on 2014-11-27 15:28:29 has no hits.

BO14038.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:00 Download gff for BO14038.complete
Subject Subject Range Query Range Percent Splice Strand
Cys-RA 1..381 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:45 Download gff for BO14038.complete
Subject Subject Range Query Range Percent Splice Strand
Cys-RA 28..420 10..402 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:32 Download gff for BO14038.complete
Subject Subject Range Query Range Percent Splice Strand
Cys-RA 37..414 17..396 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:00 Download gff for BO14038.complete
Subject Subject Range Query Range Percent Splice Strand
Cys-RA 28..420 10..402 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:39 Download gff for BO14038.complete
Subject Subject Range Query Range Percent Splice Strand
Cys-RA 37..414 17..396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:39 Download gff for BO14038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14569424..14569608 17..201 100   Minus
3R 14569171..14569365 202..396 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:32 Download gff for BO14038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10394893..10395087 202..396 98 <- Minus
arm_3R 10395146..10395330 17..201 100   Minus

BO14038.pep Sequence

Translation from 16 to 412

> BO14038.pep
MNVVKSLCILGLVLVSLIATQAADEQVVGGVSQLEGNSRKEALELLDATL
AQLATGDGPSYKAINVTSVTGQVVAGSLNTYEVELDNGSDKKQCTVKIWT
QPWLKENGTNIKIKCSGDDGELDRTWASFLDH

BO14038.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cys-PA 126 CG8050-PA 1..126 1..126 643 100 Plus
CG8066-PB 104 CG8066-PB 6..104 27..126 414 81 Plus
CG8066-PA 104 CG8066-PA 6..104 27..126 414 81 Plus
CG31313-PB 124 CG31313-PB 1..124 4..126 284 44.8 Plus
CG31313-PA 124 CG31313-PA 1..124 4..126 284 44.8 Plus