Clone Sequence Records
BO14038.3prime Sequence
412 bp (411 high quality bases) assembled on 2006-05-29
> BO14038.3prime
ATGGTCTAGAAAGCTTGCCCAGGTGCGGTCCAGTTCGCCATCGTCACCAG
AGCACTTGATCTTGATGTTGGTGCCGTTCTCCTTGAGCCATGGCTGAGTC
CAGATCTTCACGGTGCACTGCTTTTTGTCGGATCCATTGTCAAGTTCCAC
CTCGTAGGTGTTAAGACTTCCAGCTACGACCTGACCCGTCACAGAGGTCA
CATTGATTGCCTTGTAGCTGGGACCATCTCCGGTGGCCAACTGTGCGAGA
GTGGCATCCAGAAGTTCCAGAGCCTCCTTCCTGCTGTTTCCCTCCAACTG
GCTGACACCGCCTACCACCTGCTCATCGGCTGCTTGGGTGGCAATCAAGC
TGACGAGAACCAGACCCAAAATACACCAAAGATTTTACTACGTTCATGTC
GACTGATAACTT
BO14038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8050-PA | 381 | Cys-RA | 21..378 | 376..19 | 1790 | 100 | Minus |
CG8066-PA | 315 | CG8066-RA | 52..206 | 282..128 | 450 | 91.6 | Minus |
CG8066-PA | 315 | CG8066-RA | 242..280 | 92..54 | 170 | 97.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cys-RA | 484 | CG8050-RA | 35..414 | 399..19 | 1880 | 99.7 | Minus |
CG8066-RB | 703 | CG8066-RB | 81..374 | 315..19 | 860 | 87 | Minus |
CG8066-RA | 1173 | CG8066-RA | 81..374 | 315..19 | 860 | 87 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14569173..14569365 | 19..211 | 965 | 100 | Plus |
3R | 32079331 | 3R | 14569423..14569610 | 211..399 | 895 | 99.5 | Plus |
3R | 32079331 | 3R | 14568410..14568599 | 19..211 | 525 | 86 | Plus |
3R | 32079331 | 3R | 14568663..14568767 | 211..315 | 315 | 86.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:47:15 has no hits.
BO14038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:34 Download gff for
BO14038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cys-PA | 1..381 | 18..397 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:20 Download gff for
BO14038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8050-PA | 1..381 | 18..397 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:44 Download gff for
BO14038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cys-RA | 31..423 | 11..404 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:54 Download gff for
BO14038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cys-RA | 31..423 | 11..404 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:54 Download gff for
BO14038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14569164..14569365 | 11..211 | 98 | <- | Plus |
3R | 14569424..14569614 | 212..404 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:44 Download gff for
BO14038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10394886..10395087 | 11..211 | 98 | <- | Plus |
arm_3R | 10395146..10395336 | 212..404 | 98 | | Plus |
BO14038.5prime Sequence
410 bp (409 high quality bases) assembled on 2006-05-29
> BO14038.5prime
GAAGTTATCAGTCGACATGAACGTAGTAAAATCTTTGTGTATTTTGGGTC
TGGTTCTCGTCAGCTTGATTGCCACCCAAGCAGCCGATGAGCAGGTGGTA
GGCGGTGTCAGCCAGTTGGAGGGAAACAGCAGGAAGGAGGCTCTGGAACT
TCTGGATGCCACTCTCGCACAGTTGGCCACCGGAGATGGTCCCAGCTACA
AGGCAATCAATGTGACCTCTGTGACGGGTCAGGTCGTAGCTGGAAGTCTT
AACACCTACGAGGTGGAACTTGACAATGGATCCGACAAAAAGCAGTGCAC
CGTGAAGATCTGGACTCAGCCATGGCTCAAGGAGAACGGCACCAACATCA
AGATCAAGTGCTCTGGTGACGATGGCGAACTGGACCGCACCTGGGCAAGC
TTTCTAGACC
BO14038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8050-PA | 381 | Cys-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
CG8066-PA | 315 | CG8066-RA | 52..206 | 131..285 | 450 | 91.6 | Plus |
CG8066-PA | 315 | CG8066-RA | 242..280 | 321..359 | 170 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cys-RA | 484 | CG8050-RA | 35..414 | 15..394 | 1900 | 100 | Plus |
CG8066-RB | 703 | CG8066-RB | 81..374 | 98..394 | 860 | 87 | Plus |
CG8066-RA | 1173 | CG8066-RA | 81..374 | 98..394 | 860 | 87 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14569173..14569365 | 394..202 | 965 | 100 | Minus |
3R | 32079331 | 3R | 14569423..14569610 | 202..15 | 940 | 100 | Minus |
3R | 32079331 | 3R | 14568410..14568599 | 394..202 | 525 | 86 | Minus |
3R | 32079331 | 3R | 14568663..14568767 | 202..98 | 315 | 86.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:15:04 has no hits.
BO14038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:35 Download gff for
BO14038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cys-PA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:22 Download gff for
BO14038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8050-PA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:47 Download gff for
BO14038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cys-RA | 31..423 | 10..402 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:47 Download gff for
BO14038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cys-RA | 31..423 | 10..402 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:47 Download gff for
BO14038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14569164..14569365 | 202..402 | 98 | <- | Minus |
3R | 14569424..14569614 | 10..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:47 Download gff for
BO14038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10394886..10395087 | 202..402 | 98 | <- | Minus |
arm_3R | 10395146..10395336 | 10..201 | 98 | | Minus |
BO14038.complete Sequence
412 bp assembled on 2006-10-11
GenBank Submission: FJ633003
> BO14038.complete
GAAGTTATCAGTCGACATGAACGTAGTAAAATCTTTGTGTATTTTGGGTC
TGGTTCTCGTCAGCTTGATTGCCACCCAAGCAGCCGATGAGCAGGTGGTA
GGCGGTGTCAGCCAGTTGGAGGGAAACAGCAGGAAGGAGGCTCTGGAACT
TCTGGATGCCACTCTCGCACAGTTGGCCACCGGAGATGGTCCCAGCTACA
AGGCAATCAATGTGACCTCTGTGACGGGTCAGGTCGTAGCTGGAAGTCTT
AACACCTACGAGGTGGAACTTGACAATGGATCCGACAAAAAGCAGTGCAC
CGTGAAGATCTGGACTCAGCCATGGCTCAAGGAGAACGGCACCAACATCA
AGATCAAGTGCTCTGGTGACGATGGCGAACTGGACCGCACCTGGGCAAGC
TTTCTAGACCAT
BO14038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cys-RA | 381 | CG8050-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
CG8066-RB | 315 | CG8066-PB | 19..312 | 98..394 | 835 | 86.2 | Plus |
CG8066-RA | 315 | CG8066-PA | 19..312 | 98..394 | 835 | 86.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cys-RA | 484 | CG8050-RA | 35..414 | 15..394 | 1900 | 100 | Plus |
CG8066-RB | 703 | CG8066-RB | 81..374 | 98..394 | 835 | 86.2 | Plus |
CG8066-RA | 1173 | CG8066-RA | 81..374 | 98..394 | 835 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14569173..14569365 | 394..202 | 965 | 100 | Minus |
3R | 32079331 | 3R | 14569423..14569610 | 202..15 | 940 | 100 | Minus |
3R | 32079331 | 3R | 14568410..14568599 | 394..202 | 525 | 86 | Minus |
3R | 32079331 | 3R | 14568663..14568767 | 202..98 | 315 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:28:29 has no hits.
BO14038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:00 Download gff for
BO14038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cys-RA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:45 Download gff for
BO14038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cys-RA | 28..420 | 10..402 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:32 Download gff for
BO14038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cys-RA | 37..414 | 17..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:00 Download gff for
BO14038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cys-RA | 28..420 | 10..402 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:39 Download gff for
BO14038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cys-RA | 37..414 | 17..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:39 Download gff for
BO14038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14569424..14569608 | 17..201 | 100 | | Minus |
3R | 14569171..14569365 | 202..396 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:32 Download gff for
BO14038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10394893..10395087 | 202..396 | 98 | <- | Minus |
arm_3R | 10395146..10395330 | 17..201 | 100 | | Minus |
BO14038.pep Sequence
Translation from 16 to 412
> BO14038.pep
MNVVKSLCILGLVLVSLIATQAADEQVVGGVSQLEGNSRKEALELLDATL
AQLATGDGPSYKAINVTSVTGQVVAGSLNTYEVELDNGSDKKQCTVKIWT
QPWLKENGTNIKIKCSGDDGELDRTWASFLDH
BO14038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cys-PA | 126 | CG8050-PA | 1..126 | 1..126 | 643 | 100 | Plus |
CG8066-PB | 104 | CG8066-PB | 6..104 | 27..126 | 414 | 81 | Plus |
CG8066-PA | 104 | CG8066-PA | 6..104 | 27..126 | 414 | 81 | Plus |
CG31313-PB | 124 | CG31313-PB | 1..124 | 4..126 | 284 | 44.8 | Plus |
CG31313-PA | 124 | CG31313-PA | 1..124 | 4..126 | 284 | 44.8 | Plus |