Clone BO14039 Report

Search the DGRC for BO14039

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG4598-RA
Protein status:BO14039.pep: validated full length
Sequenced Size:877

Clone Sequence Records

BO14039.3prime Sequence

595 bp (585 high quality bases) assembled on 2006-05-29

> BO14039.3prime
ATGGTCTAGAAAGCTTGCTTGCTTCTTGGCCTTCTTCTTCAGACCCTCGA
GATAAATGCCCAGACCCTTCTGTACCGCCGGCTGGTTGACAAAGAACAGG
AATTTCTCCAGATCCTCCTTCCGTCCGTTCTGCAGTTGCTGTAGATCAGC
AGCTCGGAATTGCTGCTTGGTCAGTGACCTGGCTAGCGGATTGACCTTGG
CAAAGGTGCCAATGAAGGCGACACACTTTTCAATAGCCTCCTCTTTGTTA
TTGGCAGTCTCATCGATGAGGCCCACCTTCAGGGCCTCCTCCGTGGTGAA
CATGCGACCCTGGTTGAGGGCGCGTTCCGCAATTCGCTGTGGCAAGACGC
TCAGGAAAGAGGCCATAAACCACTGGGGCGCCACAATACCCAGCTGTGTT
TCGTTCAGGCCGATGGTAAAGTTTGGCACCATGACCCGATACTCGCAGGA
TGTGGCTAGCAAGCATCCACCGGCAGGGGAGTGTCCATTGATGGGCTGCC
GCTGTGGGAACACTGCTGCCGTAAAGGGCCCGCCAAGTATCCTGCAGTTG
CGTCCAGAAGGCGCGAATCCTGTCCTTATCCGGCTTGTACCTCTC

BO14039.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-PA 846 CG4598-RA 368..843 494..19 2380 100 Minus
CG4598-PA 846 CG4598-RA 273..369 590..494 460 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-RB 1216 CG4598-RB 364..939 595..19 2830 99.5 Minus
CG4598-RA 997 CG4598-RA 364..939 595..19 2830 99.5 Minus
CG4594-RB 1103 CG4594-RB 477..829 508..155 320 73.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9919376..9919843 486..19 2340 100 Minus
2L 23513712 2L 9919209..9919310 595..494 480 98 Minus
2L 23513712 2L 9920857..9921185 483..155 265 72 Minus
Blast to na_te.dros performed on 2015-02-10 21:18:25 has no hits.

BO14039.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:36 Download gff for BO14039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-PA 268..846 15..595 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:23 Download gff for BO14039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-PA 268..846 15..595 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:55:51 Download gff for BO14039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 364..948 10..595 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:15 Download gff for BO14039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 364..948 10..595 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:15 Download gff for BO14039.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9919209..9919316 487..595 97 -> Minus
2L 9919376..9919852 10..486 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:55:51 Download gff for BO14039.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9919209..9919316 487..595 97 -> Minus
arm_2L 9919376..9919852 10..486 99   Minus

BO14039.5prime Sequence

595 bp (566 high quality bases) assembled on 2006-05-29

> BO14039.5prime
GAAGTTATCAGTCGACATGATGCGATCGAAAGTCTTGAGCTTGGTGGCCC
GTGCTGGCTCCAACCGTATGATGTCCACTGCCACCAAGTTGACCACAGTG
GAGGTCAACGACAAGACCGGCATCGCCACCCTCACGATGAACCGGCCACC
CGTAAATGGTCTTAACTTGGAACTGCTGCAGGACCTGAAGAGCTCCATTG
ATGAAATCGAGAGCAATAAGAGTCGCGGACTCATTTTGACTTCGTCTAGC
TCCACAATATTCTCAGCTGGTTTGGATATTCTGGAGATGTACAAGCCGGA
TAAGGACAGGATTCGCGCCTTCTGGACGCAACTGCAGGATACTTGGCTGG
CCCTTTACGGCAGCAGTGTTCCCACAGCGGCAGCCATCAATGGACACTCC
CCTGCCGGTGGATGCTTGCTAGCCACATCCTGCGAGTATCGGGTCATGGT
GCCAAACTTTACCATCGGCCTGAACGAAACACAAGCTGGGTATTGTGGCG
CCCCAGTGGTTTATGGCCTCTTTCCTGAGCGTCTTGCCACAGCGAATTGC
GGAACGCGCCCTCAACCAGGGTCGCATGTTCACCCCGGAGGAGGC

BO14039.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-PA 846 CG4598-RA 1..467 17..483 2335 100 Plus
CG4598-PA 846 CG4598-RA 467..578 484..595 535 99.1 Plus
CG4594-PA 843 CG4594-RA 55..131 71..147 185 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-RB 1216 CG4598-RB 97..674 17..595 2855 99.7 Plus
CG4598-RA 997 CG4598-RA 97..674 17..595 2855 99.7 Plus
CG4594-RB 1103 CG4594-RB 177..566 71..460 435 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9918881..9919108 17..244 1140 100 Plus
2L 23513712 2L 9919376..9919578 392..595 955 99 Plus
2L 23513712 2L 9919169..9919317 244..392 745 100 Plus
2L 23513712 2L 9920428..9920594 71..237 325 79.6 Plus
Blast to na_te.dros performed on 2015-02-11 16:14:44 has no hits.

BO14039.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:37 Download gff for BO14039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-PA 1..578 17..595 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:24 Download gff for BO14039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-PA 1..578 17..595 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:44 Download gff for BO14039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 87..674 7..595 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:44 Download gff for BO14039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 87..674 7..595 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:44 Download gff for BO14039.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9918871..9919108 8..244 98 -> Plus
2L 9919170..9919316 245..391 100 -> Plus
2L 9919376..9919578 392..595 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:44 Download gff for BO14039.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9918871..9919108 8..244 98 -> Plus
arm_2L 9919170..9919316 245..391 100 -> Plus
arm_2L 9919376..9919578 392..595 99   Plus

BO14039.complete Sequence

877 bp assembled on 2006-10-11

GenBank Submission: FJ633004

> BO14039.complete
GAAGTTATCAGTCGACATGATGCGATCGAAAGTCTTGAGCTTGGTGGCCC
GTGCTGGCTCCAACCGTATGATGTCCACTGCCACCAAGTTGACCACAGTG
GAGGTCAACGACAAGACCGGCATCGCCACCCTCACGATGAACCGGCCACC
CGTAAATGGTCTTAACTTGGAACTGCTGCAGGACCTGAAGAGCTCCATTG
ATGAAATCGAGAGCAATAAGAGTCGCGGACTCATTTTGACTTCGTCTAGC
TCCACAATATTCTCAGCTGGTTTGGATATTCTGGAGATGTACAAGCCGGA
TAAGGACAGGATTCGCGCCTTCTGGACGCAACTGCAGGATACTTGGCTGG
CCCTTTACGGCAGCAGTGTTCCCACAGCGGCAGCCATCAATGGACACTCC
CCTGCCGGTGGATGCTTGCTAGCCACATCCTGCGAGTATCGGGTCATGGT
GCCAAACTTTACCATCGGCCTGAACGAAACACAGCTGGGTATTGTGGCGC
CCCAGTGGTTTATGGCCTCTTTCCTGAGCGTCTTGCCACAGCGAATTGCG
GAACGCGCCCTCAACCAGGGTCGCATGTTCACCACGGAGGAGGCCCTGAA
GGTGGGCCTCATCGATGAGACTGCCAATAACAAAGAGGAGGCTATTGAAA
AGTGTGTCGCCTTCATTGGCACCTTTGCCAAGGTCAATCCGCTAGCCAGG
TCACTGACCAAGCAGCAATTCCGAGCTGCTGATCTACAGCAACTGCAGAA
CGGACGGAAGGAGGATCTGGAGAAATTCCTGTTCTTTGTCAACCAGCCGG
CGGTACAGAAGGGTCTGGGCATTTATCTCGAGGGTCTGAAGAAGAAGGCC
AAGAAGCAAGCAAGCTTTCTAGACCAT

BO14039.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-RB 846 CG4598-PB 1..843 17..859 4215 100 Plus
CG4598-RA 846 CG4598-PA 1..843 17..859 4215 100 Plus
CG4594-RB 843 CG4594-PB 55..707 71..723 595 72.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-RB 1216 CG4598-RB 97..939 17..859 4215 100 Plus
CG4598-RA 997 CG4598-RA 97..939 17..859 4215 100 Plus
CG4594-RB 1103 CG4594-RB 177..829 71..723 595 72.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9919376..9919843 392..859 2340 100 Plus
2L 23513712 2L 9918881..9919108 17..244 1140 100 Plus
2L 23513712 2L 9919169..9919317 244..392 745 100 Plus
2L 23513712 2L 9920428..9920594 71..237 325 79.6 Plus
2L 23513712 2L 9920857..9921185 395..723 265 72 Plus
Blast to na_te.dros performed on 2014-11-27 07:15:38 has no hits.

BO14039.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:36 Download gff for BO14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 1..846 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:30 Download gff for BO14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 70..931 7..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:14 Download gff for BO14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 97..939 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:36 Download gff for BO14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 70..931 7..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:51 Download gff for BO14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 97..939 17..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:51 Download gff for BO14039.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9918881..9919108 17..244 100 -> Plus
2L 9919170..9919316 245..391 100 -> Plus
2L 9919376..9919843 392..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:14 Download gff for BO14039.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9918881..9919108 17..244 100 -> Plus
arm_2L 9919170..9919316 245..391 100 -> Plus
arm_2L 9919376..9919843 392..861 99   Plus

BO14039.pep Sequence

Translation from 16 to 877

> BO14039.pep
MMRSKVLSLVARAGSNRMMSTATKLTTVEVNDKTGIATLTMNRPPVNGLN
LELLQDLKSSIDEIESNKSRGLILTSSSSTIFSAGLDILEMYKPDKDRIR
AFWTQLQDTWLALYGSSVPTAAAINGHSPAGGCLLATSCEYRVMVPNFTI
GLNETQLGIVAPQWFMASFLSVLPQRIAERALNQGRMFTTEEALKVGLID
ETANNKEEAIEKCVAFIGTFAKVNPLARSLTKQQFRAADLQQLQNGRKED
LEKFLFFVNQPAVQKGLGIYLEGLKKKAKKQASFLDH

BO14039.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-PB 281 CG4598-PB 1..281 1..281 1411 100 Plus
CG4598-PA 281 CG4598-PA 1..281 1..281 1411 100 Plus
CG4594-PB 280 CG4594-PB 1..280 1..280 1001 67.1 Plus
CG4594-PA 280 CG4594-PA 1..280 1..280 1001 67.1 Plus
CG4592-PB 287 CG4592-PB 1..286 1..277 796 55.2 Plus