Clone Sequence Records
BO14039.3prime Sequence
595 bp (585 high quality bases) assembled on 2006-05-29
> BO14039.3prime
ATGGTCTAGAAAGCTTGCTTGCTTCTTGGCCTTCTTCTTCAGACCCTCGA
GATAAATGCCCAGACCCTTCTGTACCGCCGGCTGGTTGACAAAGAACAGG
AATTTCTCCAGATCCTCCTTCCGTCCGTTCTGCAGTTGCTGTAGATCAGC
AGCTCGGAATTGCTGCTTGGTCAGTGACCTGGCTAGCGGATTGACCTTGG
CAAAGGTGCCAATGAAGGCGACACACTTTTCAATAGCCTCCTCTTTGTTA
TTGGCAGTCTCATCGATGAGGCCCACCTTCAGGGCCTCCTCCGTGGTGAA
CATGCGACCCTGGTTGAGGGCGCGTTCCGCAATTCGCTGTGGCAAGACGC
TCAGGAAAGAGGCCATAAACCACTGGGGCGCCACAATACCCAGCTGTGTT
TCGTTCAGGCCGATGGTAAAGTTTGGCACCATGACCCGATACTCGCAGGA
TGTGGCTAGCAAGCATCCACCGGCAGGGGAGTGTCCATTGATGGGCTGCC
GCTGTGGGAACACTGCTGCCGTAAAGGGCCCGCCAAGTATCCTGCAGTTG
CGTCCAGAAGGCGCGAATCCTGTCCTTATCCGGCTTGTACCTCTC
BO14039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-PA | 846 | CG4598-RA | 368..843 | 494..19 | 2380 | 100 | Minus |
CG4598-PA | 846 | CG4598-RA | 273..369 | 590..494 | 460 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-RB | 1216 | CG4598-RB | 364..939 | 595..19 | 2830 | 99.5 | Minus |
CG4598-RA | 997 | CG4598-RA | 364..939 | 595..19 | 2830 | 99.5 | Minus |
CG4594-RB | 1103 | CG4594-RB | 477..829 | 508..155 | 320 | 73.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9919376..9919843 | 486..19 | 2340 | 100 | Minus |
2L | 23513712 | 2L | 9919209..9919310 | 595..494 | 480 | 98 | Minus |
2L | 23513712 | 2L | 9920857..9921185 | 483..155 | 265 | 72 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:18:25 has no hits.
BO14039.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:36 Download gff for
BO14039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-PA | 268..846 | 15..595 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:23 Download gff for
BO14039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-PA | 268..846 | 15..595 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:55:51 Download gff for
BO14039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 364..948 | 10..595 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:15 Download gff for
BO14039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 364..948 | 10..595 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:15 Download gff for
BO14039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9919209..9919316 | 487..595 | 97 | -> | Minus |
2L | 9919376..9919852 | 10..486 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:55:51 Download gff for
BO14039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9919209..9919316 | 487..595 | 97 | -> | Minus |
arm_2L | 9919376..9919852 | 10..486 | 99 | | Minus |
BO14039.5prime Sequence
595 bp (566 high quality bases) assembled on 2006-05-29
> BO14039.5prime
GAAGTTATCAGTCGACATGATGCGATCGAAAGTCTTGAGCTTGGTGGCCC
GTGCTGGCTCCAACCGTATGATGTCCACTGCCACCAAGTTGACCACAGTG
GAGGTCAACGACAAGACCGGCATCGCCACCCTCACGATGAACCGGCCACC
CGTAAATGGTCTTAACTTGGAACTGCTGCAGGACCTGAAGAGCTCCATTG
ATGAAATCGAGAGCAATAAGAGTCGCGGACTCATTTTGACTTCGTCTAGC
TCCACAATATTCTCAGCTGGTTTGGATATTCTGGAGATGTACAAGCCGGA
TAAGGACAGGATTCGCGCCTTCTGGACGCAACTGCAGGATACTTGGCTGG
CCCTTTACGGCAGCAGTGTTCCCACAGCGGCAGCCATCAATGGACACTCC
CCTGCCGGTGGATGCTTGCTAGCCACATCCTGCGAGTATCGGGTCATGGT
GCCAAACTTTACCATCGGCCTGAACGAAACACAAGCTGGGTATTGTGGCG
CCCCAGTGGTTTATGGCCTCTTTCCTGAGCGTCTTGCCACAGCGAATTGC
GGAACGCGCCCTCAACCAGGGTCGCATGTTCACCCCGGAGGAGGC
BO14039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-PA | 846 | CG4598-RA | 1..467 | 17..483 | 2335 | 100 | Plus |
CG4598-PA | 846 | CG4598-RA | 467..578 | 484..595 | 535 | 99.1 | Plus |
CG4594-PA | 843 | CG4594-RA | 55..131 | 71..147 | 185 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-RB | 1216 | CG4598-RB | 97..674 | 17..595 | 2855 | 99.7 | Plus |
CG4598-RA | 997 | CG4598-RA | 97..674 | 17..595 | 2855 | 99.7 | Plus |
CG4594-RB | 1103 | CG4594-RB | 177..566 | 71..460 | 435 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9918881..9919108 | 17..244 | 1140 | 100 | Plus |
2L | 23513712 | 2L | 9919376..9919578 | 392..595 | 955 | 99 | Plus |
2L | 23513712 | 2L | 9919169..9919317 | 244..392 | 745 | 100 | Plus |
2L | 23513712 | 2L | 9920428..9920594 | 71..237 | 325 | 79.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:14:44 has no hits.
BO14039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:37 Download gff for
BO14039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-PA | 1..578 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:24 Download gff for
BO14039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-PA | 1..578 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:00:44 Download gff for
BO14039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 87..674 | 7..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:48:44 Download gff for
BO14039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 87..674 | 7..595 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:48:44 Download gff for
BO14039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9918871..9919108 | 8..244 | 98 | -> | Plus |
2L | 9919170..9919316 | 245..391 | 100 | -> | Plus |
2L | 9919376..9919578 | 392..595 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:00:44 Download gff for
BO14039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9918871..9919108 | 8..244 | 98 | -> | Plus |
arm_2L | 9919170..9919316 | 245..391 | 100 | -> | Plus |
arm_2L | 9919376..9919578 | 392..595 | 99 | | Plus |
BO14039.complete Sequence
877 bp assembled on 2006-10-11
GenBank Submission: FJ633004
> BO14039.complete
GAAGTTATCAGTCGACATGATGCGATCGAAAGTCTTGAGCTTGGTGGCCC
GTGCTGGCTCCAACCGTATGATGTCCACTGCCACCAAGTTGACCACAGTG
GAGGTCAACGACAAGACCGGCATCGCCACCCTCACGATGAACCGGCCACC
CGTAAATGGTCTTAACTTGGAACTGCTGCAGGACCTGAAGAGCTCCATTG
ATGAAATCGAGAGCAATAAGAGTCGCGGACTCATTTTGACTTCGTCTAGC
TCCACAATATTCTCAGCTGGTTTGGATATTCTGGAGATGTACAAGCCGGA
TAAGGACAGGATTCGCGCCTTCTGGACGCAACTGCAGGATACTTGGCTGG
CCCTTTACGGCAGCAGTGTTCCCACAGCGGCAGCCATCAATGGACACTCC
CCTGCCGGTGGATGCTTGCTAGCCACATCCTGCGAGTATCGGGTCATGGT
GCCAAACTTTACCATCGGCCTGAACGAAACACAGCTGGGTATTGTGGCGC
CCCAGTGGTTTATGGCCTCTTTCCTGAGCGTCTTGCCACAGCGAATTGCG
GAACGCGCCCTCAACCAGGGTCGCATGTTCACCACGGAGGAGGCCCTGAA
GGTGGGCCTCATCGATGAGACTGCCAATAACAAAGAGGAGGCTATTGAAA
AGTGTGTCGCCTTCATTGGCACCTTTGCCAAGGTCAATCCGCTAGCCAGG
TCACTGACCAAGCAGCAATTCCGAGCTGCTGATCTACAGCAACTGCAGAA
CGGACGGAAGGAGGATCTGGAGAAATTCCTGTTCTTTGTCAACCAGCCGG
CGGTACAGAAGGGTCTGGGCATTTATCTCGAGGGTCTGAAGAAGAAGGCC
AAGAAGCAAGCAAGCTTTCTAGACCAT
BO14039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-RB | 846 | CG4598-PB | 1..843 | 17..859 | 4215 | 100 | Plus |
CG4598-RA | 846 | CG4598-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
CG4594-RB | 843 | CG4594-PB | 55..707 | 71..723 | 595 | 72.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-RB | 1216 | CG4598-RB | 97..939 | 17..859 | 4215 | 100 | Plus |
CG4598-RA | 997 | CG4598-RA | 97..939 | 17..859 | 4215 | 100 | Plus |
CG4594-RB | 1103 | CG4594-RB | 177..829 | 71..723 | 595 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9919376..9919843 | 392..859 | 2340 | 100 | Plus |
2L | 23513712 | 2L | 9918881..9919108 | 17..244 | 1140 | 100 | Plus |
2L | 23513712 | 2L | 9919169..9919317 | 244..392 | 745 | 100 | Plus |
2L | 23513712 | 2L | 9920428..9920594 | 71..237 | 325 | 79.6 | Plus |
2L | 23513712 | 2L | 9920857..9921185 | 395..723 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:15:38 has no hits.
BO14039.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:36 Download gff for
BO14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 1..846 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:30 Download gff for
BO14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 70..931 | 7..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:14 Download gff for
BO14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 97..939 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:36 Download gff for
BO14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 70..931 | 7..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:51 Download gff for
BO14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4598-RA | 97..939 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:51 Download gff for
BO14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9918881..9919108 | 17..244 | 100 | -> | Plus |
2L | 9919170..9919316 | 245..391 | 100 | -> | Plus |
2L | 9919376..9919843 | 392..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:14 Download gff for
BO14039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9918881..9919108 | 17..244 | 100 | -> | Plus |
arm_2L | 9919170..9919316 | 245..391 | 100 | -> | Plus |
arm_2L | 9919376..9919843 | 392..861 | 99 | | Plus |
BO14039.pep Sequence
Translation from 16 to 877
> BO14039.pep
MMRSKVLSLVARAGSNRMMSTATKLTTVEVNDKTGIATLTMNRPPVNGLN
LELLQDLKSSIDEIESNKSRGLILTSSSSTIFSAGLDILEMYKPDKDRIR
AFWTQLQDTWLALYGSSVPTAAAINGHSPAGGCLLATSCEYRVMVPNFTI
GLNETQLGIVAPQWFMASFLSVLPQRIAERALNQGRMFTTEEALKVGLID
ETANNKEEAIEKCVAFIGTFAKVNPLARSLTKQQFRAADLQQLQNGRKED
LEKFLFFVNQPAVQKGLGIYLEGLKKKAKKQASFLDH
BO14039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4598-PB | 281 | CG4598-PB | 1..281 | 1..281 | 1411 | 100 | Plus |
CG4598-PA | 281 | CG4598-PA | 1..281 | 1..281 | 1411 | 100 | Plus |
CG4594-PB | 280 | CG4594-PB | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4594-PA | 280 | CG4594-PA | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4592-PB | 287 | CG4592-PB | 1..286 | 1..277 | 796 | 55.2 | Plus |