Clone Sequence Records
BO14042.3prime Sequence
680 bp (607 high quality bases) assembled on 2006-05-29
> BO14042.3prime
ATGGTCTAGAAAGCTTGCGGCGAAAGTCACTTGGTAGAAGAGCCACTCTT
CCATGAACGACGGCACAAACGCCTTGGTGGTGGTGAACTTCACCTTGGGA
CGCAGCAAATTCAACTGCTCCTCGAATAGACGCAGCTGCACCTTGCAGGT
GGACCCATTGCCATGAGTCAAATACTTTCCGTCGGGTTTCAGCACCTTGA
AGGAGTGCTCGAAGATGGTACGAATGAAATCCCAGGTCTCGCCCTCCGGG
GCATCGGTTATGGGTATGTCCGTAAGATCCCCAAAAACGTAGTCGAACTT
GCGGCCCTCGGCGATGAACTTCTTCAAGTACTCCACACAGTCGCCCACAA
TGATCTCGTACTGATCGCCCTTGCGTTTCTCCAGCACATCGCCGCAGATC
ACGTTGAGGTATTTGTTGCAGGTTTGCATCACAAGCTCATCGATCTCCAG
CATCACCACATGCTTCGGATTCTCCTTGAGTAGCTCGTACAACAAGGCGC
CATCACCGCCGCCCAGGATGCAGATCTCCTTGCCCTCGTAGTTCTCCACG
CCGCGACACATCAGGGTCTCCGTGTAAATCAAATCGGATTCAGCAATGTT
CTGCAGCTCCGTCAAGGAGCAGCATGTTGCCCAGGGTCTTGGAGTGCATG
ATTTGAATCTTCTGGAAGGGCGAGCGCGCC
BO14042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-PA | 1104 | CG4300-RA | 511..1101 | 609..19 | 2955 | 100 | Minus |
| CG4300-PB | 1101 | CG4300-RB | 508..1098 | 609..19 | 2955 | 100 | Minus |
| CG4300-PA | 1104 | CG4300-RA | 441..506 | 680..615 | 330 | 100 | Minus |
| CG4300-PB | 1101 | CG4300-RB | 438..503 | 680..615 | 330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-RD | 1983 | CG4300-RD | 518..1178 | 680..19 | 3270 | 99.7 | Minus |
| CG4300-RC | 1980 | CG4300-RC | 515..1175 | 680..19 | 3270 | 99.7 | Minus |
| CG4300-RB | 1980 | CG4300-RB | 515..1175 | 680..19 | 3270 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12272461..12273041 | 19..599 | 2905 | 100 | Plus |
| 3L | 28110227 | 3L | 12273507..12273577 | 610..680 | 340 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:08:18 has no hits.
BO14042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:40 Download gff for
BO14042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-PA | 441..1104 | 16..680 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:28 Download gff for
BO14042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-PB | 438..1101 | 16..680 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:39:05 Download gff for
BO14042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 518..1190 | 6..680 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:40 Download gff for
BO14042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RB | 515..1187 | 6..680 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:40 Download gff for
BO14042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12272449..12273041 | 6..599 | 99 | <- | Plus |
| 3L | 12273498..12273577 | 600..680 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:39:05 Download gff for
BO14042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12265549..12266141 | 6..599 | 99 | <- | Plus |
| arm_3L | 12266598..12266677 | 600..680 | 97 | | Plus |
BO14042.5prime Sequence
743 bp (657 high quality bases) assembled on 2006-05-29
> BO14042.5prime
GAAGTTATCAGTCGACATGGCGGCCCAGACGATACTGTTTGATTTCACGC
TGGACAAGGACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAA
ATCCTGCGTAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTA
CTCGATGGAGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACA
AGGACACGGTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTC
AACGTGGAGTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGA
CAGCGGTAAGAGCCTGGAGAATGTCCTGGCAATCAAACTGAAGGCCATCA
AGGCCCAGAAGCTGCCGACGCTGAAGCGCGGCGATGTCTCCAGGTACTTC
CCATCGTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGTCTT
CGAGGCGCGCTCGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGACCC
TGGGCAACATGCTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCCGAT
TTGATTTACACGGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGAGGG
CAAGGAGATTCTGCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACGAG
CTACTCAAGGAGAATCCGAAGCATGTGGTGATGCTGGAGATCGATGAGCT
TGTGATGCAAACCTGCAACAAATACCTCAACGGGATCTGCGGC
BO14042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-PB | 1101 | CG4300-RB | 1..593 | 17..609 | 2965 | 100 | Plus |
| CG4300-PA | 1104 | CG4300-RA | 1..286 | 17..302 | 1430 | 100 | Plus |
| CG4300-PA | 1104 | CG4300-RA | 394..596 | 407..609 | 1015 | 100 | Plus |
| CG4300-PB | 1101 | CG4300-RB | 593..726 | 610..743 | 645 | 99.2 | Plus |
| CG4300-PA | 1104 | CG4300-RA | 596..729 | 610..743 | 645 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-RC | 1980 | CG4300-RC | 78..803 | 17..743 | 3595 | 99.7 | Plus |
| CG4300-RB | 1980 | CG4300-RB | 78..803 | 17..743 | 3595 | 99.7 | Plus |
| CG4300-RD | 1983 | CG4300-RD | 471..806 | 407..743 | 1645 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12276890..12277174 | 301..17 | 1425 | 100 | Minus |
| 3L | 28110227 | 3L | 12272833..12273041 | 743..534 | 985 | 99 | Minus |
| 3L | 28110227 | 3L | 12273498..12273623 | 533..408 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 12274003..12274111 | 410..302 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:13:58 has no hits.
BO14042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:41 Download gff for
BO14042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-PB | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:30 Download gff for
BO14042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-PB | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:26:18 Download gff for
BO14042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RB | 66..803 | 2..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:53:00 Download gff for
BO14042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RB | 66..803 | 2..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:53:00 Download gff for
BO14042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12272833..12273041 | 534..743 | 99 | <- | Minus |
| 3L | 12273498..12273620 | 411..533 | 100 | <- | Minus |
| 3L | 12274003..12274111 | 302..410 | 100 | <- | Minus |
| 3L | 12276890..12277186 | 2..301 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:26:18 Download gff for
BO14042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12265933..12266141 | 534..743 | 99 | <- | Minus |
| arm_3L | 12266598..12266720 | 411..533 | 100 | <- | Minus |
| arm_3L | 12267103..12267211 | 302..410 | 100 | <- | Minus |
| arm_3L | 12269990..12270286 | 2..301 | 98 | | Minus |
BO14042.complete Sequence
1132 bp assembled on 2008-08-14
GenBank Submission: FJ633005
> BO14042.complete
GAAGTTATCAGTCGACATGGCGGCCCAGACGATACTGTTTGATTTCACGC
TGGACAAGGACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAA
ATCCTGCGTAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTA
CTCGATGGAGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACA
AGGACACGGTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTC
AACGTGGAGTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGA
CAGCGGTAAGAGCCTGGAGAATGTCCTGGCAATCAAACTGAAGGCCATCA
AGGCCCAGAAGCTGCCGACGCTGAAGCGCGGCGATGTCTCCAGGTACTTC
CCATCGTCAGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGTCTT
CGAGGCGCGCTCGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGACCC
TGGGCAACATGCTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCCGAT
TTGATTTACACGGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGAGGG
CAAGGAGATCTGCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACGAGC
TACTCAAGGAGAATCCGAAGCATGTGGTGATGCTGGAGATCGATGAGCTT
GTGATGCAAACCTGCAACAAATACCTCAACGTGATCTGCGGCGATGTGCT
GGAGAAACGCAAGGGCGATCAGTACGAGATCATTGTGGGCGACTGTGTGG
AGTACTTGAAGAAGTTCATCGCCGAGGGCCGCAAGTTCGACTACGTTTTT
GGGGATCTTACGGACATACCCATAACCGATGCCCCGGAGGGCGAGACCTG
GGATTTCATTCGTACCATCTTCGAGCACTCCTTCAAGGTGCTGAAACCCG
ACGGAAAGTATTTGACTCATGGCAATGGGTCCACCTGCAAGGTGCAGCTG
CGTCTATTCGAGGAGCAGTTGAATTTGCTGCGTCCCAAGGTGAAGTTCAC
CACCACCAAGGCGTTTGTGCCGTCGTTCATGGAAGAGTGGCTCTTCTACC
AAGTGACTTTCGCCGCAAGCTTTCTAGACCAT
BO14042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-RC | 1374 | CG4300-PC | 1..1098 | 17..1114 | 5490 | 100 | Plus |
| CG4300-RB | 1101 | CG4300-PB | 1..1098 | 17..1114 | 5490 | 100 | Plus |
| CG4300-RD | 1377 | CG4300-PD | 394..1101 | 407..1114 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-RC | 1980 | CG4300-RC | 78..1175 | 17..1114 | 5490 | 100 | Plus |
| CG4300-RB | 1980 | CG4300-RB | 78..1175 | 17..1114 | 5490 | 100 | Plus |
| CG4300-RD | 1983 | CG4300-RD | 471..1178 | 407..1114 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12272461..12273041 | 1114..534 | 2905 | 100 | Minus |
| 3L | 28110227 | 3L | 12276890..12277174 | 301..17 | 1425 | 100 | Minus |
| 3L | 28110227 | 3L | 12273498..12273623 | 533..408 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 12274003..12274111 | 410..302 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:19 has no hits.
BO14042.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:38 Download gff for
BO14042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RB | 81..1202 | 2..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:21 Download gff for
BO14042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RB | 78..1175 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:59 Download gff for
BO14042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RB | 93..1190 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:49 Download gff for
BO14042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RB | 78..1175 | 17..1116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:49 Download gff for
BO14042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12272457..12273041 | 534..1116 | 99 | <- | Minus |
| 3L | 12273498..12273620 | 411..533 | 100 | <- | Minus |
| 3L | 12274003..12274111 | 302..410 | 100 | <- | Minus |
| 3L | 12276890..12277174 | 17..301 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:21 Download gff for
BO14042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12269990..12270274 | 17..301 | 100 | | Minus |
| arm_3L | 12265557..12266141 | 534..1116 | 99 | <- | Minus |
| arm_3L | 12266598..12266720 | 411..533 | 100 | <- | Minus |
| arm_3L | 12267103..12267211 | 302..410 | 100 | <- | Minus |
BO14042.pep Sequence
Translation from 16 to 1132
> BO14042.pep
MAAQTILFDFTLDKDKTADEEARLQVAKILRNELEQLFPQLELAYSMESP
ENGYFAVLHENKDTVITCRIFQHGLLTLNVEYFLPDGKEPSISFDSGKSL
ENVLAIKLKAIKAQKLPTLKRGDVSRYFPSSDERIIEYDIDKVVFEARSP
FQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICI
LGGGDGALLYELLKENPKHVVMLEIDELVMQTCNKYLNVICGDVLEKRKG
DQYEIIVGDCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGETWDFIRT
IFEHSFKVLKPDGKYLTHGNGSTCKVQLRLFEEQLNLLRPKVKFTTTKAF
VPSFMEEWLFYQVTFAASFLDH
BO14042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-PB | 366 | CG4300-PB | 1..366 | 1..366 | 1899 | 100 | Plus |
| CG4300-PC | 457 | CG4300-PC | 1..366 | 1..366 | 1899 | 100 | Plus |
| CG4300-PA | 367 | CG4300-PA | 1..367 | 1..366 | 1766 | 92.9 | Plus |
| CG4300-PD | 458 | CG4300-PD | 1..367 | 1..366 | 1766 | 92.9 | Plus |
| SpdS-PC | 287 | CG8327-PC | 26..196 | 140..319 | 156 | 30.5 | Plus |
