Clone BO14043 Report

Search the DGRC for BO14043

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG18619-RB
Protein status:BO14043.pep: validated full length
Sequenced Size:385

Clone Sequence Records

BO14043.3prime Sequence

383 bp (382 high quality bases) assembled on 2006-05-29

> BO14043.3prime
ATGGTCTAGAAAGCTTGCTTCTTGTTTGAGGATTCCGAGTTCCTGAAGTA
ACTGGTCATTGTTGGTTGGAGTGTTGCTTTCGCTCAACTGGTTATTCCAT
TGAATTAAGCGCTCCAGTTCCGTACGCAAAGCAACTACAGCCTTCTCCCG
ATCCGCCACCAGTTCCTCCAGGTACTGATACCGCAGCTTCTTGCGCGCCC
GGCATTCCCTGGCACTTTGTCTGCTGCGTTCTAGTTTGGCTTTCATGTCC
AATTTTTCAGTAGACGTCTTTCTTCCTGGTTTTCGTCCCCTTTTTCCACA
TTCCTTGCGCGTCACTTGTGTTTCCTCCGTTATTGACATTTTGTTGCTCT
GTATCTCCATATCAGCCATGTCGACTGATAACT

BO14043.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-PB 354 CG18619-RB 1..351 369..19 1755 100 Minus
CG18619-PA 357 CG18619-RA 60..354 313..19 1475 100 Minus
CG18619-PC 282 CG18619-RC 1..261 369..109 1305 100 Minus
CG18619-PD 285 CG18619-RD 60..264 313..109 1025 100 Minus
CG18619-PA 357 CG18619-RA 1..57 369..313 285 100 Minus
CG18619-PD 285 CG18619-RD 1..57 369..313 285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-RB 627 CG18619-RB 84..434 369..19 1755 100 Minus
CG18619-RA 512 CG18619-RA 84..437 369..19 1715 99.2 Minus
CG18619-RC 516 CG18619-RC 84..438 369..19 1705 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10264762..10264885 232..109 620 100 Minus
2L 23513712 2L 10264947..10265036 108..19 450 100 Minus
2L 23513712 2L 10264551..10264633 313..231 415 100 Minus
2L 23513712 2L 10264208..10264264 369..313 285 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:06:40 has no hits.

BO14043.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:42 Download gff for BO14043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-PB 1..354 15..369 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:31 Download gff for BO14043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-PB 1..354 15..369 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:49:47 Download gff for BO14043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..440 12..369 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:46 Download gff for BO14043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..440 12..369 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:46 Download gff for BO14043.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10264208..10264264 313..369 100 -> Minus
2L 10264552..10264633 231..312 100 -> Minus
2L 10264764..10264885 109..230 100 -> Minus
2L 10264947..10265042 12..108 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:49:47 Download gff for BO14043.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10264208..10264264 313..369 100 -> Minus
arm_2L 10264552..10264633 231..312 100 -> Minus
arm_2L 10264764..10264885 109..230 100 -> Minus
arm_2L 10264947..10265042 12..108 96   Minus

BO14043.5prime Sequence

383 bp (382 high quality bases) assembled on 2006-05-29

> BO14043.5prime
GAAGTTATCAGTCGACATGGCTGATATGGAGATACAGAGCAACAAAATGT
CAATAACGGAGGAAACACAAGTGACGCGCAAGGAATGTGGAAAAAGGGGA
CGAAAACCAGGAAGAAAGACGTCTACTGAAAAATTGGACATGAAAGCCAA
ACTAGAACGCAGCAGACAAAGTGCCAGGGAATGCCGGGCGCGCAAGAAGC
TGCGGTATCAGTACCTGGAGGAACTGGTGGCGGATCGGGAGAAGGCTGTA
GTTGCTTTGCGTACGGAACTGGAGCGCTTAATTCAATGGAATAACCAGTT
GAGCGAAAGCAACACTCCAACCAACAATGACCAGTTACTTCAGGAACTCG
GAATCCTCAAACAAGAAGCAAGCTTTCTAGACC

BO14043.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-PB 354 CG18619-RB 1..351 17..367 1755 100 Plus
CG18619-PA 357 CG18619-RA 60..354 73..367 1475 100 Plus
CG18619-PC 282 CG18619-RC 1..261 17..277 1305 100 Plus
CG18619-PD 285 CG18619-RD 60..264 73..277 1025 100 Plus
CG18619-PA 357 CG18619-RA 1..57 17..73 285 100 Plus
CG18619-PD 285 CG18619-RD 1..57 17..73 285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-RB 627 CG18619-RB 84..434 17..367 1755 100 Plus
CG18619-RA 512 CG18619-RA 84..437 17..367 1715 99.2 Plus
CG18619-RC 516 CG18619-RC 84..438 17..367 1705 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10264762..10264885 154..277 620 100 Plus
2L 23513712 2L 10264947..10265036 278..367 450 100 Plus
2L 23513712 2L 10264551..10264633 73..155 415 100 Plus
2L 23513712 2L 10264208..10264264 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:21:59 has no hits.

BO14043.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:42 Download gff for BO14043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-PB 1..354 17..371 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:32 Download gff for BO14043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-PB 1..354 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:26:28 Download gff for BO14043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..440 17..374 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:48 Download gff for BO14043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..440 17..374 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:48 Download gff for BO14043.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10264208..10264264 17..73 100 -> Plus
2L 10264552..10264633 74..155 100 -> Plus
2L 10264764..10264885 156..277 100 -> Plus
2L 10264947..10265042 278..374 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:26:28 Download gff for BO14043.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10264208..10264264 17..73 100 -> Plus
arm_2L 10264552..10264633 74..155 100 -> Plus
arm_2L 10264764..10264885 156..277 100 -> Plus
arm_2L 10264947..10265042 278..374 96   Plus

BO14043.complete Sequence

385 bp assembled on 2006-12-18

GenBank Submission: FJ633006

> BO14043.complete
GAAGTTATCAGTCGACATGGCTGATATGGAGATACAGAGCAACAAAATGT
CAATAACGGAGGAAACACAAGTGACGCGCAAGGAATGTGGAAAAAGGGGA
CGAAAACCAGGAAGAAAGACGTCTACTGAAAAATTGGACATGAAAGCCAA
ACTAGAACGCAGCAGACAAAGTGCCAGGGAATGCCGGGCGCGCAAGAAGC
TGCGGTATCAGTACCTGGAGGAACTGGTGGCGGATCGGGAGAAGGCTGTA
GTTGCTTTGCGTACGGAACTGGAGCGCTTAATTCAATGGAATAACCAGTT
GAGCGAAAGCAACACTCCAACCAACAATGACCAGTTACTTCAGGAACTCG
GAATCCTCAAACAAGAAGCAAGCTTTCTAGACCAT

BO14043.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-RB 354 CG18619-PB 1..351 17..367 1755 100 Plus
CG18619-RA 357 CG18619-PA 1..354 17..367 1690 99.2 Plus
CG18619-RC 282 CG18619-PC 1..282 17..294 1315 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-RB 627 CG18619-RB 84..434 17..367 1755 100 Plus
CG18619-RA 512 CG18619-RA 84..437 17..367 1690 99.2 Plus
CG18619-RC 516 CG18619-RC 84..438 17..367 1680 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10264762..10264885 154..277 620 100 Plus
2L 23513712 2L 10264947..10265036 278..367 450 100 Plus
2L 23513712 2L 10264551..10264633 73..155 415 100 Plus
2L 23513712 2L 10264208..10264264 17..73 285 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:14:03 has no hits.

BO14043.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:40 Download gff for BO14043.complete
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 1..354 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:02 Download gff for BO14043.complete
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 78..434 17..374 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:02 Download gff for BO14043.complete
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..434 17..369 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:40 Download gff for BO14043.complete
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 78..434 17..374 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:01 Download gff for BO14043.complete
Subject Subject Range Query Range Percent Splice Strand
CG18619-RB 84..434 17..369 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:01 Download gff for BO14043.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10264947..10265036 278..369 97   Plus
2L 10264208..10264264 17..73 100 -> Plus
2L 10264552..10264633 74..155 100 -> Plus
2L 10264764..10264885 156..277 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:02 Download gff for BO14043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10264208..10264264 17..73 100 -> Plus
arm_2L 10264552..10264633 74..155 100 -> Plus
arm_2L 10264764..10264885 156..277 100 -> Plus
arm_2L 10264947..10265036 278..369 97   Plus

BO14043.pep Sequence

Translation from 16 to 385

> BO14043.pep
MADMEIQSNKMSITEETQVTRKECGKRGRKPGRKTSTEKLDMKAKLERSR
QSARECRARKKLRYQYLEELVADREKAVVALRTELERLIQWNNQLSESNT
PTNNDQLLQELGILKQEASFLDH

BO14043.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG18619-PB 117 CG18619-PB 1..117 1..117 586 100 Plus
CG18619-PA 118 CG18619-PA 1..118 1..117 574 99.2 Plus
CG18619-PC 93 CG18619-PC 1..89 1..89 435 97.8 Plus
CG18619-PD 94 CG18619-PD 1..90 1..89 423 96.7 Plus