Clone Sequence Records
BO14043.3prime Sequence
383 bp (382 high quality bases) assembled on 2006-05-29
> BO14043.3prime
ATGGTCTAGAAAGCTTGCTTCTTGTTTGAGGATTCCGAGTTCCTGAAGTA
ACTGGTCATTGTTGGTTGGAGTGTTGCTTTCGCTCAACTGGTTATTCCAT
TGAATTAAGCGCTCCAGTTCCGTACGCAAAGCAACTACAGCCTTCTCCCG
ATCCGCCACCAGTTCCTCCAGGTACTGATACCGCAGCTTCTTGCGCGCCC
GGCATTCCCTGGCACTTTGTCTGCTGCGTTCTAGTTTGGCTTTCATGTCC
AATTTTTCAGTAGACGTCTTTCTTCCTGGTTTTCGTCCCCTTTTTCCACA
TTCCTTGCGCGTCACTTGTGTTTCCTCCGTTATTGACATTTTGTTGCTCT
GTATCTCCATATCAGCCATGTCGACTGATAACT
BO14043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-PB | 354 | CG18619-RB | 1..351 | 369..19 | 1755 | 100 | Minus |
CG18619-PA | 357 | CG18619-RA | 60..354 | 313..19 | 1475 | 100 | Minus |
CG18619-PC | 282 | CG18619-RC | 1..261 | 369..109 | 1305 | 100 | Minus |
CG18619-PD | 285 | CG18619-RD | 60..264 | 313..109 | 1025 | 100 | Minus |
CG18619-PA | 357 | CG18619-RA | 1..57 | 369..313 | 285 | 100 | Minus |
CG18619-PD | 285 | CG18619-RD | 1..57 | 369..313 | 285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-RB | 627 | CG18619-RB | 84..434 | 369..19 | 1755 | 100 | Minus |
CG18619-RA | 512 | CG18619-RA | 84..437 | 369..19 | 1715 | 99.2 | Minus |
CG18619-RC | 516 | CG18619-RC | 84..438 | 369..19 | 1705 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10264762..10264885 | 232..109 | 620 | 100 | Minus |
2L | 23513712 | 2L | 10264947..10265036 | 108..19 | 450 | 100 | Minus |
2L | 23513712 | 2L | 10264551..10264633 | 313..231 | 415 | 100 | Minus |
2L | 23513712 | 2L | 10264208..10264264 | 369..313 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:06:40 has no hits.
BO14043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:42 Download gff for
BO14043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-PB | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:31 Download gff for
BO14043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-PB | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:49:47 Download gff for
BO14043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..440 | 12..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:46 Download gff for
BO14043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..440 | 12..369 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:46 Download gff for
BO14043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10264208..10264264 | 313..369 | 100 | -> | Minus |
2L | 10264552..10264633 | 231..312 | 100 | -> | Minus |
2L | 10264764..10264885 | 109..230 | 100 | -> | Minus |
2L | 10264947..10265042 | 12..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:49:47 Download gff for
BO14043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10264208..10264264 | 313..369 | 100 | -> | Minus |
arm_2L | 10264552..10264633 | 231..312 | 100 | -> | Minus |
arm_2L | 10264764..10264885 | 109..230 | 100 | -> | Minus |
arm_2L | 10264947..10265042 | 12..108 | 96 | | Minus |
BO14043.5prime Sequence
383 bp (382 high quality bases) assembled on 2006-05-29
> BO14043.5prime
GAAGTTATCAGTCGACATGGCTGATATGGAGATACAGAGCAACAAAATGT
CAATAACGGAGGAAACACAAGTGACGCGCAAGGAATGTGGAAAAAGGGGA
CGAAAACCAGGAAGAAAGACGTCTACTGAAAAATTGGACATGAAAGCCAA
ACTAGAACGCAGCAGACAAAGTGCCAGGGAATGCCGGGCGCGCAAGAAGC
TGCGGTATCAGTACCTGGAGGAACTGGTGGCGGATCGGGAGAAGGCTGTA
GTTGCTTTGCGTACGGAACTGGAGCGCTTAATTCAATGGAATAACCAGTT
GAGCGAAAGCAACACTCCAACCAACAATGACCAGTTACTTCAGGAACTCG
GAATCCTCAAACAAGAAGCAAGCTTTCTAGACC
BO14043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-PB | 354 | CG18619-RB | 1..351 | 17..367 | 1755 | 100 | Plus |
CG18619-PA | 357 | CG18619-RA | 60..354 | 73..367 | 1475 | 100 | Plus |
CG18619-PC | 282 | CG18619-RC | 1..261 | 17..277 | 1305 | 100 | Plus |
CG18619-PD | 285 | CG18619-RD | 60..264 | 73..277 | 1025 | 100 | Plus |
CG18619-PA | 357 | CG18619-RA | 1..57 | 17..73 | 285 | 100 | Plus |
CG18619-PD | 285 | CG18619-RD | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-RB | 627 | CG18619-RB | 84..434 | 17..367 | 1755 | 100 | Plus |
CG18619-RA | 512 | CG18619-RA | 84..437 | 17..367 | 1715 | 99.2 | Plus |
CG18619-RC | 516 | CG18619-RC | 84..438 | 17..367 | 1705 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10264762..10264885 | 154..277 | 620 | 100 | Plus |
2L | 23513712 | 2L | 10264947..10265036 | 278..367 | 450 | 100 | Plus |
2L | 23513712 | 2L | 10264551..10264633 | 73..155 | 415 | 100 | Plus |
2L | 23513712 | 2L | 10264208..10264264 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:21:59 has no hits.
BO14043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:42 Download gff for
BO14043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-PB | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:32 Download gff for
BO14043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-PB | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:26:28 Download gff for
BO14043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..440 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:48 Download gff for
BO14043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..440 | 17..374 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:48 Download gff for
BO14043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10264208..10264264 | 17..73 | 100 | -> | Plus |
2L | 10264552..10264633 | 74..155 | 100 | -> | Plus |
2L | 10264764..10264885 | 156..277 | 100 | -> | Plus |
2L | 10264947..10265042 | 278..374 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:26:28 Download gff for
BO14043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10264208..10264264 | 17..73 | 100 | -> | Plus |
arm_2L | 10264552..10264633 | 74..155 | 100 | -> | Plus |
arm_2L | 10264764..10264885 | 156..277 | 100 | -> | Plus |
arm_2L | 10264947..10265042 | 278..374 | 96 | | Plus |
BO14043.complete Sequence
385 bp assembled on 2006-12-18
GenBank Submission: FJ633006
> BO14043.complete
GAAGTTATCAGTCGACATGGCTGATATGGAGATACAGAGCAACAAAATGT
CAATAACGGAGGAAACACAAGTGACGCGCAAGGAATGTGGAAAAAGGGGA
CGAAAACCAGGAAGAAAGACGTCTACTGAAAAATTGGACATGAAAGCCAA
ACTAGAACGCAGCAGACAAAGTGCCAGGGAATGCCGGGCGCGCAAGAAGC
TGCGGTATCAGTACCTGGAGGAACTGGTGGCGGATCGGGAGAAGGCTGTA
GTTGCTTTGCGTACGGAACTGGAGCGCTTAATTCAATGGAATAACCAGTT
GAGCGAAAGCAACACTCCAACCAACAATGACCAGTTACTTCAGGAACTCG
GAATCCTCAAACAAGAAGCAAGCTTTCTAGACCAT
BO14043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-RB | 354 | CG18619-PB | 1..351 | 17..367 | 1755 | 100 | Plus |
CG18619-RA | 357 | CG18619-PA | 1..354 | 17..367 | 1690 | 99.2 | Plus |
CG18619-RC | 282 | CG18619-PC | 1..282 | 17..294 | 1315 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-RB | 627 | CG18619-RB | 84..434 | 17..367 | 1755 | 100 | Plus |
CG18619-RA | 512 | CG18619-RA | 84..437 | 17..367 | 1690 | 99.2 | Plus |
CG18619-RC | 516 | CG18619-RC | 84..438 | 17..367 | 1680 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10264762..10264885 | 154..277 | 620 | 100 | Plus |
2L | 23513712 | 2L | 10264947..10265036 | 278..367 | 450 | 100 | Plus |
2L | 23513712 | 2L | 10264551..10264633 | 73..155 | 415 | 100 | Plus |
2L | 23513712 | 2L | 10264208..10264264 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:14:03 has no hits.
BO14043.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:40 Download gff for
BO14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:02 Download gff for
BO14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 78..434 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:02 Download gff for
BO14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..434 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:40 Download gff for
BO14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 78..434 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:01 Download gff for
BO14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18619-RB | 84..434 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:01 Download gff for
BO14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10264947..10265036 | 278..369 | 97 | | Plus |
2L | 10264208..10264264 | 17..73 | 100 | -> | Plus |
2L | 10264552..10264633 | 74..155 | 100 | -> | Plus |
2L | 10264764..10264885 | 156..277 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:02 Download gff for
BO14043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10264208..10264264 | 17..73 | 100 | -> | Plus |
arm_2L | 10264552..10264633 | 74..155 | 100 | -> | Plus |
arm_2L | 10264764..10264885 | 156..277 | 100 | -> | Plus |
arm_2L | 10264947..10265036 | 278..369 | 97 | | Plus |
BO14043.pep Sequence
Translation from 16 to 385
> BO14043.pep
MADMEIQSNKMSITEETQVTRKECGKRGRKPGRKTSTEKLDMKAKLERSR
QSARECRARKKLRYQYLEELVADREKAVVALRTELERLIQWNNQLSESNT
PTNNDQLLQELGILKQEASFLDH
BO14043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18619-PB | 117 | CG18619-PB | 1..117 | 1..117 | 586 | 100 | Plus |
CG18619-PA | 118 | CG18619-PA | 1..118 | 1..117 | 574 | 99.2 | Plus |
CG18619-PC | 93 | CG18619-PC | 1..89 | 1..89 | 435 | 97.8 | Plus |
CG18619-PD | 94 | CG18619-PD | 1..90 | 1..89 | 423 | 96.7 | Plus |