Clone BO14048 Report

Search the DGRC for BO14048

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG7172-RA
Protein status:BO14048.pep: Inserted from web
Sequenced Size:730

Clone Sequence Records

BO14048.complete Sequence

730 bp assembled on 2008-09-03

GenBank Submission: KX794123

> BO14048.complete
GAAGTTATCAGTCGACATGAATGTAGGCAAGATAAGCGTTGTCACCAGAC
TTCCTGCCCTCCGCTCGTGCGCCCAGTACTCGAGCGCTGCGAAAGCGGAA
CTGCCGGCTTCCTTGGTCGGCGACGTGGATGTGGAACCAACATATCCCCA
GACGGTGGACAGATCCGGCCTGCAACCACAACACAAAAATGTGCTCCTTA
ACAAATTGCCATACCAGGAACCTCACTCCTGGATTCATTTGACCGAGAAG
TACCAGAGACAGGCATTCGGCCGGTATGGGGCCCAGAGCAATGTGAATCC
CAAGATTTGCTTCGATTCCCACGGAGAGAAAGACAGCAGGCAGGTTATGC
AACTAGAAACACTCCTGAAAATGCTGGAGAAGAACCGCGCGCAGAAGGCA
GAGGAGCTGGCAAGGATAAATGCCCGTGAAGAGGACATTGCGAAGAAGAT
GGAGAAGTTGACACAGTGGAAGGCGGACCTGCACGCGAAGATCGCTAAGC
GGGAGGCGGATGCAGCGGCAGCCATACAACGCAAGGAACGCCTGGTAGAG
GAGGTGCGCCGACACTTCGGGTTCAAGGTGGATACACGCGACGAACGCTT
TAAGGAAATGCTAGAGCAAAAAGAGAAGGAGGACAAGAAGAAGCAGAAGG
AGGCCAAGCGAAAGGCCAAGGAGGAGAAGATGATGGCCAAGCTGGTAGAG
AAAGCATCAGTGGCAAGCTTTCTAGACCAT

BO14048.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7172-RA 699 CG7172-PA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7172-RA 840 CG7172-RA 66..761 17..712 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21568138..21568833 712..17 3480 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:01:25 has no hits.

BO14048.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:59 Download gff for BO14048.complete
Subject Subject Range Query Range Percent Splice Strand
CG7172-RA 69..783 6..721 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:49 Download gff for BO14048.complete
Subject Subject Range Query Range Percent Splice Strand
CG7172-RA 66..761 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:47 Download gff for BO14048.complete
Subject Subject Range Query Range Percent Splice Strand
CG7172-RA 62..757 17..714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:58 Download gff for BO14048.complete
Subject Subject Range Query Range Percent Splice Strand
CG7172-RA 66..761 17..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:58 Download gff for BO14048.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21568136..21568833 17..714 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:49 Download gff for BO14048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21561236..21561933 17..714 99   Minus

BO14048.3prime Sequence

559 bp (503 high quality bases) assembled on 2006-05-29

> BO14048.3prime
ATGGTCTAGAAAGCTTGCCACTGATGCTTTCTCTACCAGCTTGGCCATCA
TCTTCTCCTCCTTGGCCTTTCGCTTGGCCTCCTTCTGCTTCTTCTTGTCC
TCCTTCTCTTTTTGCTCTAGCATTTCCTTAAAGCGTTCGTCGCGTGTATC
CACCTTGAACCCGAAGTGTCGGCGCACCTCCTCTACCAGGCGTTCCTTGC
GTTGTATGGCTGCCGCTGCATCCGCCTCCCGCTTAGCGATCTTCGCGTGC
AGGTCCGCCTTCCACTGTGTCAACTTCTCCATCTTCTTCGCAATGTCCTC
TTCACGGGCATTTATCCTTGCCAGCTCCTCTGCCTTCTGCGCGCGGTTCT
TCTCCAGCATTTTCAGGAGTGTTTCTAGTTGCATAACCTGCCTGCTGTCT
TTCTCTCCGTGGGAATCGAAGCAAAATCTTGGGATTCACATTGCTCTGGG
CCCCATACCGGCCGAATGCCTGTCTCTGGTACTTCTCGGTCAAATGAATC
CAGGAGTGAGGTTCCTGGTATGGCAATTTGTTAAGGAGCACATTTTTGTG
TTGTGGTTG

BO14048.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7172-PA 699 CG7172-RA 290..696 425..19 2035 100 Minus
CG7172-PA 699 CG7172-RA 157..292 559..424 680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7172-RA 840 CG7172-RA 222..761 559..19 2680 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21568138..21568677 19..559 2655 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 16:09:24 has no hits.

BO14048.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:47 Download gff for BO14048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7172-PA 157..699 15..559 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:37 Download gff for BO14048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7172-PA 157..699 15..559 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:36:38 Download gff for BO14048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7172-RA 222..769 10..559 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:36 Download gff for BO14048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7172-RA 222..769 10..559 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:36 Download gff for BO14048.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21568130..21568677 10..559 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:36:38 Download gff for BO14048.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21561230..21561777 10..559 99   Plus

BO14048.pep Sequence

Translation from 16 to 730

> BO14048.pep
MNVGKISVVTRLPALRSCAQYSSAAKAELPASLVGDVDVEPTYPQTVDRS
GLQPQHKNVLLNKLPYQEPHSWIHLTEKYQRQAFGRYGAQSNVNPKICFD
SHGEKDSRQVMQLETLLKMLEKNRAQKAEELARINAREEDIAKKMEKLTQ
WKADLHAKIAKREADAAAAIQRKERLVEEVRRHFGFKVDTRDERFKEMLE
QKEKEDKKKQKEAKRKAKEEKMMAKLVEKASVASFLDH

BO14048.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7172-PA 232 CG7172-PA 1..232 1..232 1177 100 Plus