Clone Sequence Records
BO14052.3prime Sequence
668 bp (570 high quality bases) assembled on 2006-05-29
> BO14052.3prime
ATGGTCTAGAAAGCTTGCAGCATCTGATGGATTGGCAACCCGTCGCAGGC
GAGCGGACTGTTCGATGATCTCTCTGGCGCGCAGATATAAAGATTGTAGC
GTTTCCAAGCTGGTAATGGAACTGGCCAGCACATCGAGCTTCTCCTGCCG
TCCAATGTCGGGCAGCTTGCTCTCCGCGTCGCCGCCAGCCATTCCGCTAT
TGCTTATGTTGACGGCGAGCATGTTGAGTTGGCGCTGCATTAGTTCATCA
TCCGAAGCACTCTGACCCTTTTCGACGCGCTCCTTGTACGCCTTGTAATG
GGCCATCGAAAAGTTAAGCGCTGTTCCCAGTGGGTCCAGCAATTCCTTTT
CAATTTCCGGCAGAGCCTGCCAGAAGCCAGTCACATCATTCTTGTCTCTT
GCCGCAAAGTAGCGTAGGATATTCAGAGCATGACACAGGCGATCGGAGTG
CAGAAGAAGATCGGATTTCACGTCATGGGGCAGCACACAGACGCAGAGCA
GCAACATCTCGCGGAAGAGCTTTCCGCTATAAACTTCCGGCATGGGACCA
GATTGCCCTAGCGCCTTGTCAACCAGGTCCTTGTACATCCCTCCGAGGTA
GCCCATTAGTCCGCCGTGCTGCAATGTCCCCCATCAAATTTTTTAAGGAT
GAGATACTTTTCCTGAAT
BO14052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30496-PA | 1908 | CG30496-RA | 1293..1905 | 631..19 | 3040 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30496-RA | 2379 | CG30496-RA | 1408..2047 | 660..19 | 3130 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 19:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7700907..7701546 | 660..19 | 3080 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-01-30 19:18:33 has no hits.
BO14052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:51 Download gff for
BO14052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-PA | 1259..1908 | 18..668 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:45 Download gff for
BO14052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-PA | 1259..1908 | 18..668 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:08:04 Download gff for
BO14052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-RA | 1401..2057 | 6..668 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:19:52 Download gff for
BO14052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-RA | 1401..2057 | 6..668 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:19:52 Download gff for
BO14052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7700900..7701556 | 6..668 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:08:04 Download gff for
BO14052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3588405..3589061 | 6..668 | 98 | | Minus |
BO14052.5prime Sequence
755 bp (625 high quality bases) assembled on 2006-05-29
> BO14052.5prime
GAAGTTATCAGTCGACATGCAGGAGCAGGAGATGGAGGTGGAAGTGGGGG
ACCCGGCAAAGGCGTCGAATTTGCTGCGGCTCATCAAGCAGCTGCTGCTG
GAAAAAGCTTACGATGGCGTGCGGATGTTGTTTCAAAGTGCCCAGGAATC
GGAAAAGAACACTCGGCTGCTGCCCCACATAGCCATGGATCTATACCATG
ACGTGTGCTTGGAAAACATTTCCGACGAGGTGAACTCCCAGGAGCCAGAA
CTATTCGACTGCTCTGACGAGCTGCTCAAGCTGCTGGCCAAGTACGCCCC
ACTGCATGAGCTTATGCTGGAACTGATGGAGCGCTTGGAAGAGAGTAGCA
GTATCAATGTGTTCGGCGCCTATCTGCGGGCCCTACAAGTTGTGCTGCAG
CGACAGGGACGCGACAAGCCGCAGGCCGTTGAGTGGAGCCTGAATAGCAT
CTTCACCCATCTCAAGGATTTGCCCCTGCCCGAATACCTCTCCGAGGGCT
ATGACGAGGCCCAAGCGCGACTCATAGAGCAAAACGAACAGGTGGAGGAC
CTTCTGGCTCACTACATCACCGTGGGACTCTTTCGGGAGCCGCTCCGCGA
TGAAATTCTGCAGCAGGATGTGCGGACACCCAGCCAAATATTCAGGGATT
GCGGCGTCAACCGGCGCAACATATTCACTTGCTTCTTCCTTCACCTGTTG
GGACGCCCGTTGGCCTGCTGGGAAAGAATCACGCCAAGGAGGACCTTACC
AGATC
BO14052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30496-PA | 1908 | CG30496-RA | 1..699 | 17..715 | 3420 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30496-RA | 2379 | CG30496-RA | 143..882 | 17..755 | 3570 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7699642..7700381 | 17..755 | 3545 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:12:14 has no hits.
BO14052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:52 Download gff for
BO14052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-PA | 1..740 | 17..755 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:46 Download gff for
BO14052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-PA | 1..740 | 17..755 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:57 Download gff for
BO14052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-RA | 143..882 | 17..755 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:53 Download gff for
BO14052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-RA | 143..882 | 17..755 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:53 Download gff for
BO14052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7699642..7700381 | 17..755 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:57 Download gff for
BO14052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3587147..3587886 | 17..755 | 98 | | Plus |
BO14052.complete Sequence
1939 bp assembled on 2008-08-14
GenBank Submission: FJ633008
> BO14052.complete
GAAGTTATCAGTCGACATGCAGGAGCAGGAGATGGAGGTGGAAGTGGGGG
ACCCGGCAAAGGCGTCGAATTTGCTGCGGCTCATCAAGCAGCTGCTGCTG
GAAAAAGCTTACGATGGCGTGCGGATGTTGTTTCAAAGTGCCCAGGAATC
GGAAAAGAACACTCGGCTGCTGCCCCACATAGCCATGGATCTATACCATG
ACGTGTGCTTGGAAAACATTTCCGACGAGGTGAACTCCCAGGAGCCAGAA
CTATTCGACTGCTCTGACGAGCTGCTCAAGCTGCTGGCCAAGTACGCCCC
ACTGCATGAGCTTATGCTGGAACTGATGGAGCGCTTGGAAGAGAGTAGCA
GTATCAATGTGTTCGGCGCCTATCTGCGGGCCCTACAAGTTGTGCTGCAG
CGACAGGGACGCGACAAGCCGCAGGCCGTTGAGTGGAGCCTGAATAGCAT
CTTCACCCATCTCAAGGATTTGCCCCTGCCCGAATACCTCTCCGAGGGCT
ATGACGAGGCCCAAGCGCGACTCATAGAGCAAAACGAACAGGTGGAGGAC
CTTCTGGCTCACTACATCACCGTGGGACTCTTTCGGGAGCCGCTCCGCGA
TGAAATTCTGCAGCAGGATGTGCGGACACCCAGCCAAATATTCAGGGATT
GCGGCGTCAACCGGCGCAACATATTCACTTGCTTCTTCATTCAGCTGTTG
GGACGTCCGTTGGCCCTGCTGGAGATGAATCACGCCAAGGAGGACCTTAC
GAGATCCTACGTGCAGCAGGTTACGGAAAGCCTGACTCAGGATGCCAACC
AGTTCCTGGGGGATCCCTTCTACCTGCTCAACCTCGTGGAACAGCGTGCC
AGATGGCTAAGGAAACTAGATGCCTCGAGAGGCGTCTACGAGATGAGTTG
CCAGAATGTTTTCCTCATCGAGGAGAAACTTCCGCTGCATGCTGTAGCCA
TGTACTATCACTCGCTGTTCGTGGGTAACCAACTGCCCACAAACGCACCA
AAGGTATATGCACCTTTATTCCTATTCGAAACGATTGTCTATCTGGCTGA
AGTGCTACTCAGGCAGCAGGAGCCTCCCCTACAATATTGTGGTCTTCGAT
TAGTGGAACATCATTTGAGTACCTTGCAGCACTCAGTTCCCACCAGCTCC
CTCCAGCTGGATGTCCACAAGCGCTTTTGCGAAGCCCTTTGCAAGATTGT
GGGCTATTCGCCGCAGGTCGCACTTCGGCAGTTGGGAATTCATGTGCTCA
GGCAATTTGTTCTGGCCTTCGATGATCATGGAAAGTATCTCATCCTTAAA
AATCTGATGGGGACATTGCAGCACGGCGGACTAATGGGCTACCTCGGAGG
GATGTACAAGGACCTTGTTGACAAGGCGCTAGGGCAATCTGGTCCCATGC
CGGAAGTTTATAGCGGAAAGCTCTTCCGCGAGATGTTGCTGCTCTGCGTC
TGTGTGCTGCCCCATGACGTGAAATCCGATCTTCTTCTGCACTCCGATCG
CCTGTGTCATGCTCTGAATATCCTACGCTACTTTGCGGCAAGAGACAAGA
ATGATGTGACTGGCTTCTGGCAGGCTCTGCCGGAAATTGAAAAGGAATTG
CTGGACCCACTGGGAACAGCGCTTAACTTTTCGATGGCCCATTACAAGGC
GTACAAGGAGCGCGTCGAAAAGGGTCAGAGTGCTTCGGATGATGAACTAA
TGCAGCGCCAACTCAACATGCTCGCCGTCAACATAAGCAATAGCGGAATG
GCTGGCGGCGACGCGGAGAGCAAGCTGCCCGACATTGGACGGCAGGAGAA
GCTCGATGTGCTGGCCAGTTCCATTACCAGCTTGGAAACGCTACAATCTT
TATATCTGCGCGCCAGAGAGATCATCGAACAGTCCGCTCGCCTGCGACGG
GTTGCCAATCCATCAGATGCTGCAAGCTTTCTAGACCAT
BO14052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30496-RA | 1908 | CG30496-PA | 1..1905 | 17..1921 | 9525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30496-RA | 2379 | CG30496-RA | 143..2047 | 17..1921 | 9525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7699642..7701546 | 17..1921 | 9525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:53:02 has no hits.
BO14052.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:38 Download gff for
BO14052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-RA | 139..2053 | 17..1934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:11 Download gff for
BO14052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-RA | 143..2047 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:57 Download gff for
BO14052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-RA | 139..2043 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:16 Download gff for
BO14052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30496-RA | 143..2047 | 17..1923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:16 Download gff for
BO14052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7699642..7701546 | 17..1923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:11 Download gff for
BO14052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3587147..3589051 | 17..1923 | 99 | | Plus |
BO14052.pep Sequence
Translation from 16 to 1939
> BO14052.pep
MQEQEMEVEVGDPAKASNLLRLIKQLLLEKAYDGVRMLFQSAQESEKNTR
LLPHIAMDLYHDVCLENISDEVNSQEPELFDCSDELLKLLAKYAPLHELM
LELMERLEESSSINVFGAYLRALQVVLQRQGRDKPQAVEWSLNSIFTHLK
DLPLPEYLSEGYDEAQARLIEQNEQVEDLLAHYITVGLFREPLRDEILQQ
DVRTPSQIFRDCGVNRRNIFTCFFIQLLGRPLALLEMNHAKEDLTRSYVQ
QVTESLTQDANQFLGDPFYLLNLVEQRARWLRKLDASRGVYEMSCQNVFL
IEEKLPLHAVAMYYHSLFVGNQLPTNAPKVYAPLFLFETIVYLAEVLLRQ
QEPPLQYCGLRLVEHHLSTLQHSVPTSSLQLDVHKRFCEALCKIVGYSPQ
VALRQLGIHVLRQFVLAFDDHGKYLILKNLMGTLQHGGLMGYLGGMYKDL
VDKALGQSGPMPEVYSGKLFREMLLLCVCVLPHDVKSDLLLHSDRLCHAL
NILRYFAARDKNDVTGFWQALPEIEKELLDPLGTALNFSMAHYKAYKERV
EKGQSASDDELMQRQLNMLAVNISNSGMAGGDAESKLPDIGRQEKLDVLA
SSITSLETLQSLYLRAREIIEQSARLRRVANPSDAASFLDH
BO14052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30496-PA | 635 | CG30496-PA | 1..635 | 1..635 | 3255 | 100 | Plus |
