Clone Sequence Records
BO14055.3prime Sequence
607 bp (528 high quality bases) assembled on 2006-05-29
> BO14055.3prime
ATGGTCTAGAAAGCTTGCACTGAATCCCCATCGCAGGCCGAAAAGCAGCA
GTACAGCGGTGATTATGGCCACGGAACGTGATTTCTCACTGCCCGCTCCA
CAGGCGAGGTTGTCGCGCGGGTACTTATTGAGCGGATCGGGCTCCTCGCC
CGGACGACACTGCTTGCCCTGAGCAGCAAATTGTGCTCCGCACAGCTCGT
GGCACGGCGGGCACATGATCGCGCCCTTGTGCAGCCATCCATTGGCCGCA
ATTCGAATAGAAAGCTTCTGCCCGGGAAAGGAGCACTTGTAGCTATAGTT
GCCCACCAGGATGTGCAGTCGCCCGTCGAAGCAATCGTACTTGTAGCATC
CGCTGCCCCAATGCTGCCACTCACGCGTCTGGTGACAGGATCGCTCCTCC
CACATCGATTCGCTGTGATCAAAGCACTTTGCTCCCTCGCCATAGCTCTC
CAAGGCGAAGTTCTTTTCAGGCCTGGGATTATTCTCTGTAAATCGACAAT
GAGATCCGCGCACTATCACGTTCTTGCTGCGCCAGGTAAACTCCTGAATG
TAGGGACAGTGATCGGCCAGCGAAACCGAGCCGCCGTAGAACCCCTCCTC
GCCGTCC
BO14055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3953-PA | 2052 | l(3)IX-14-RA | 1461..2049 | 607..19 | 2945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Invadolysin-RA | 3610 | CG3953-RA | 2194..2782 | 607..19 | 2945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10157852..10158306 | 473..19 | 2275 | 100 | Minus |
3R | 32079331 | 3R | 10157655..10157789 | 607..473 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:00:14 has no hits.
BO14055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:55 Download gff for
BO14055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3953-PA | 1461..2052 | 18..607 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:50 Download gff for
BO14055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3953-PA | 1461..2052 | 18..607 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:46:11 Download gff for
BO14055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Invadolysin-RA | 2194..2788 | 12..607 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:16 Download gff for
BO14055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Invadolysin-RA | 2194..2788 | 12..607 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:16 Download gff for
BO14055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10157655..10157788 | 474..607 | 100 | -> | Minus |
3R | 10157852..10158312 | 12..473 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:46:11 Download gff for
BO14055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5983377..5983510 | 474..607 | 100 | -> | Minus |
arm_3R | 5983574..5984034 | 12..473 | 99 | | Minus |
BO14055.5prime Sequence
664 bp (578 high quality bases) assembled on 2006-05-29
> BO14055.5prime
GAAGTTATCAGTCGACATGGCCAAAACGCCCCCGCTCCGCCCCCACGGTA
ACATGGCCAAATTCCTGGCAGCCCTCGGCATCTGCTCTTGGCTCCTCGTT
TCGGCCACCGCTCACAACTGCCAACACCAGCATCCAAAGGCCCACGAGGT
CGTCCATGGCGTGCGCATCCAACTGGCTGATAGCGAAGATGACTCCGCCG
GAGATCCAGCGAGGCATAGCGTCCGACGGCGCAGCGTTGCCGCCGAGCAG
CCACTGCGAATTCTGCTCGTCTACGACGAATCCGTCTACAGGCTGGAAGA
AGAGAAATTTAATTTGATAAATGACACCGTTCTCCCGGAAGCCGTGCAGT
TCTGGGAACAGGCCCTGATGGTGCGAGAGACCAAGGGCGTTATCCGACTC
AATAGGAAATGCGACAGCACGCAGGTGTACGTGAAAAACGGACACACCCA
CTGCATCGACCATTGCAAGGCGACGACGATGTGCGGCGAGGTTCAGGTGC
CCGATGCGCACTTGGATGTATGTCGGGTGTGCAATGCCACGGGTCAGAAT
TGTAGAATCGATAGTAACACACAGCCGGGCGAAGGAATTGAGAATGCGGA
CTTTGTGTTCTACGTGTCCGCCAGGCAGACGCAGCGTTGTTTCAAGGGTC
TAACCGTTGCCTAT
BO14055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3953-PA | 2052 | l(3)IX-14-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Invadolysin-RA | 3610 | CG3953-RA | 733..1381 | 16..664 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10156576..10156722 | 518..664 | 735 | 100 | Plus |
3R | 32079331 | 3R | 10154222..10154367 | 147..292 | 730 | 100 | Plus |
3R | 32079331 | 3R | 10145400..10145534 | 16..150 | 675 | 100 | Plus |
3R | 32079331 | 3R | 10155975..10156091 | 404..520 | 585 | 100 | Plus |
3R | 32079331 | 3R | 10155822..10155905 | 323..406 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:38:42 has no hits.
BO14055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:56 Download gff for
BO14055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3953-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:52 Download gff for
BO14055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3953-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:16 Download gff for
BO14055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Invadolysin-RA | 730..1381 | 9..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:45:50 Download gff for
BO14055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Invadolysin-RA | 730..1381 | 9..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:45:50 Download gff for
BO14055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10145397..10145532 | 9..148 | 97 | -> | Plus |
3R | 10154224..10154366 | 149..291 | 100 | -> | Plus |
3R | 10155712..10155742 | 292..322 | 100 | -> | Plus |
3R | 10155822..10155904 | 323..405 | 100 | -> | Plus |
3R | 10155977..10156088 | 406..517 | 100 | -> | Plus |
3R | 10156576..10156722 | 518..664 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:16 Download gff for
BO14055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5982298..5982444 | 518..664 | 100 | | Plus |
arm_3R | 5971119..5971254 | 9..148 | 97 | -> | Plus |
arm_3R | 5979946..5980088 | 149..291 | 100 | -> | Plus |
arm_3R | 5981434..5981464 | 292..322 | 100 | -> | Plus |
arm_3R | 5981544..5981626 | 323..405 | 100 | -> | Plus |
arm_3R | 5981699..5981810 | 406..517 | 100 | -> | Plus |
BO14055.complete Sequence
2083 bp assembled on 2008-08-14
GenBank Submission: FJ633010
> BO14055.complete
GAAGTTATCAGTCGACATGGCCAAAACGCCCCCGCTCCGCCCCCACGGTA
ACATGGCCAAATTCCTGGCAGCCCTCGGCATCTGCTCTTGGCTCCTCGTT
TCGGCCACCGCTCACAACTGCCAACACCAGCATCCAAAGGCCCACGAGGT
CGTCCATGGCGTGCGCATCCAACTGGCTGATAGCGAAGATGACTCCGCCG
GAGATCCAGCGAGGCATAGCGTCCGACGGCGCAGCGTTGCCGCCGAGCAG
CCACTGCGAATTCTGCTCGTCTACGACGAATCCGTCTACAGGCTGGAAGA
AGAGAAATTTAATTTGATAAATGACACCGTTCTCCCGGAAGCCGTGCAGT
TCTGGGAACAGGCCCTGATGGTGCGAGAGACCAAGGGCGTTATCCGACTC
AATAGGAAATGCGACAGCACGCAGGTGTACGTGAAAAACGGACACACCCA
CTGCATCGACCATTGCAAGGCGACGACGATGTGCGGCGAGGTTCAGGTGC
CCGATGCGCACTTGGATGTATGTCGGGTGTGCAATGCCACGGGTCAGAAT
TGTAGAATCGATAGTAACACACAGCCGGGCGAAGGAATTGAGAATGCGGA
CTTTGTGTTCTACGTGTCCGCCAGGCAGACGCAGCGTTGTTTCAAGGGTC
TAACCGTTGCCTATGCGGCCCATTGTCAACAGGAAGCGGCTCTGGATCGT
CCAATCGCCGGTCATGCGAATCTCTGTCCGGAGAGCATTAGCACAAAGCC
GCAGGAACTGCAGACACTGATCTCCACCGTAAAGCACGAGATTCTCCATG
CACTGGGATTCTCCGTGAGCTTGTACGCATTCTTTAGGGACGATGATGGA
AAACCCCGAACGCCCCGAAAATTAGACACTGGCAAGCCGTACCTGAATGA
AAAATTGCAGATCCATCAGTGGAGCAACGAGACCATTCGCAAGGTGGTGC
GAGAGAACTGGTCTGTGCGTGGTGGCCATGTTAACAAGGTAGTGGACATG
ATGGTCACGCCTCGCGTAATTGCCGAGGTGCGCGCCCACTTTAACTGCAA
TAAGTTGGAGGGCGCCGAGCTGGAGGATCAGGGTGGCGAAGGTACCGCCC
TGACCCACTGGGAAAAGCGCATCCTGGAGAATGAGGCCATGACTGGCACG
CACACACAGTCGCCGGTCTTCTCGCGCATCACCCTTGCATTGATGGAGGA
TTCCGGCTGGTATCGGGCCAACTACTCCATGGCAACGCCGCTGACTTGGG
GCAAGGGACTGGGATGTGCGTTTGCTATGCGTAGTTGCAAGGATTGGATA
CAGTACAACCATGCTAGGGGTCGCTCTATACATCCCTTCTGCTCGAAGGT
CAAGCAGGATCCCCTCCAAACCGAATGCACAGATGATCGCAACTCTGTGG
CGCTTTGCAATCTTATCCGCCATGAGTTTGAGCTGCCCAAAGGCTATCAG
AACTTCGACAGCCTAAATCATGTGAAGGACGGCGAGGAGGGGTTCTACGG
CGGCTCGGTTTCGCTGGCCGATCACTGTCCCTACATTCAGGAGTTTACCT
GGCGCAGCAAGAACGTGATAGTGCGCGGATCTCATTGTCGATTTACAGAG
AATAATCCCAGGCCTGAAAAGAACTTCGCCTTGGAGAGCTATGGCGAGGG
AGCAAAGTGCTTTGATCACAGCGAATCGATGTGGGAGGAGCGATCCTGTC
ACCAGACGCGTGAGTGGCAGCATTGGGGCAGCGGATGCTACAAGTACGAT
TGCTTCGACGGGCGACTGCACATCCTGGTGGGCAACTATAGCTACAAGTG
CTCCTTTCCCGGGCAGAAGCTTTCTATTCGAATTGCGGCCAATGGATGGC
TGCACAAGGGCGCGATCATGTGCCCGCCGTGCCACGAGCTGTGCGGAGCA
CAATTTGCTGCTCAGGGCAAGCAGTGTCGTCCGGGCGAGGAGCCCGATCC
GCTCAATAAGTACCCGCGCGACAACCTCGCCTGTGGAGCGGGCAGTGAGA
AATCACGTTCCGTGGCCATAATCACCGCTGTACTGCTGCTTTTCGGCCTG
CGATGGGGATTCAGTGCAAGCTTTCTAGACCAT
BO14055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Invadolysin-RA | 2052 | CG3953-PA | 1..2049 | 17..2065 | 10245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Invadolysin-RA | 3610 | CG3953-RA | 733..2782 | 16..2065 | 10250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10157852..10158306 | 1611..2065 | 2275 | 100 | Plus |
3R | 32079331 | 3R | 10157017..10157431 | 904..1318 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 10156576..10156961 | 518..903 | 1930 | 100 | Plus |
3R | 32079331 | 3R | 10157494..10157789 | 1316..1611 | 1480 | 100 | Plus |
3R | 32079331 | 3R | 10154222..10154367 | 147..292 | 730 | 100 | Plus |
3R | 32079331 | 3R | 10145400..10145534 | 16..150 | 675 | 100 | Plus |
3R | 32079331 | 3R | 10155975..10156091 | 404..520 | 585 | 100 | Plus |
3R | 32079331 | 3R | 10155822..10155905 | 323..406 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:52:28 has no hits.
BO14055.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:26 Download gff for
BO14055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Invadolysin-RA | 699..2757 | 9..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:16 Download gff for
BO14055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Invadolysin-RA | 734..2782 | 17..2067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:22 Download gff for
BO14055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Invadolysin-RA | 703..2751 | 17..2067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:49 Download gff for
BO14055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Invadolysin-RA | 734..2782 | 17..2067 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:49 Download gff for
BO14055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10155977..10156088 | 406..517 | 100 | -> | Plus |
3R | 10156576..10156961 | 518..903 | 100 | -> | Plus |
3R | 10157017..10157430 | 904..1317 | 100 | -> | Plus |
3R | 10145401..10145532 | 17..148 | 100 | -> | Plus |
3R | 10154224..10154366 | 149..291 | 100 | -> | Plus |
3R | 10155712..10155742 | 292..322 | 100 | -> | Plus |
3R | 10155822..10155904 | 323..405 | 100 | -> | Plus |
3R | 10157496..10157788 | 1318..1610 | 100 | -> | Plus |
3R | 10157852..10158306 | 1611..2067 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:16 Download gff for
BO14055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5981699..5981810 | 406..517 | 100 | -> | Plus |
arm_3R | 5971123..5971254 | 17..148 | 100 | -> | Plus |
arm_3R | 5979946..5980088 | 149..291 | 100 | -> | Plus |
arm_3R | 5981434..5981464 | 292..322 | 100 | -> | Plus |
arm_3R | 5981544..5981626 | 323..405 | 100 | -> | Plus |
arm_3R | 5982298..5982683 | 518..903 | 100 | -> | Plus |
arm_3R | 5982739..5983152 | 904..1317 | 100 | -> | Plus |
arm_3R | 5983218..5983510 | 1318..1610 | 100 | -> | Plus |
arm_3R | 5983574..5984028 | 1611..2067 | 99 | | Plus |
BO14055.pep Sequence
Translation from 16 to 2083
> BO14055.pep
MAKTPPLRPHGNMAKFLAALGICSWLLVSATAHNCQHQHPKAHEVVHGVR
IQLADSEDDSAGDPARHSVRRRSVAAEQPLRILLVYDESVYRLEEEKFNL
INDTVLPEAVQFWEQALMVRETKGVIRLNRKCDSTQVYVKNGHTHCIDHC
KATTMCGEVQVPDAHLDVCRVCNATGQNCRIDSNTQPGEGIENADFVFYV
SARQTQRCFKGLTVAYAAHCQQEAALDRPIAGHANLCPESISTKPQELQT
LISTVKHEILHALGFSVSLYAFFRDDDGKPRTPRKLDTGKPYLNEKLQIH
QWSNETIRKVVRENWSVRGGHVNKVVDMMVTPRVIAEVRAHFNCNKLEGA
ELEDQGGEGTALTHWEKRILENEAMTGTHTQSPVFSRITLALMEDSGWYR
ANYSMATPLTWGKGLGCAFAMRSCKDWIQYNHARGRSIHPFCSKVKQDPL
QTECTDDRNSVALCNLIRHEFELPKGYQNFDSLNHVKDGEEGFYGGSVSL
ADHCPYIQEFTWRSKNVIVRGSHCRFTENNPRPEKNFALESYGEGAKCFD
HSESMWEERSCHQTREWQHWGSGCYKYDCFDGRLHILVGNYSYKCSFPGQ
KLSIRIAANGWLHKGAIMCPPCHELCGAQFAAQGKQCRPGEEPDPLNKYP
RDNLACGAGSEKSRSVAIITAVLLLFGLRWGFSASFLDH
BO14055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Invadolysin-PA | 683 | CG3953-PA | 1..683 | 1..683 | 3736 | 100 | Plus |