Clone Sequence Records
BO14058.3prime Sequence
632 bp (622 high quality bases) assembled on 2006-05-29
> BO14058.3prime
ATGGTCTAGAAAGCTTGCCATGGCAGCCCCATTGTAATGCTGATACATCT
CATCCCAGAATCTCTGACGCTCCGGCTCGGGATTGGTTTTCATCGCCAGA
TTGGCTGAGATATCCATATAGTTGAGACTGTTCATCACATTGGTGGGATC
GATTGGTGCCCACTTGGTGGTCAGCATAGGATCCTCGGAATCAGGCGTAG
GAGAGCCATATTTCGCGAAATTCGTCCACATGCGCACCATTCGATTCTTG
ACCTGTACCTCCATCGACTTGGGATCCAAGCTCAAATTGAAGAAACCGAA
CTTGAACAGATAACCCAGCTCATCGCCATGGCAAACACCAGGTCGGGGAA
TACCCAGCATCCGTTTGTAGAGCCCCAAAGATCCGTCGAAGGAGAAGCGG
TACATGTAGACAGGTGCATTTCCAAACTTGGCATGATTTCGGGCTGTGCG
ACGGATGCCCTGAAGGAACATGAGATCCGTGAGGAGCGCAATCCATCTCG
TCCACTGATTCAATGCCCACATGCTTGCTTCCCAAGTAGAAGGATCTTAT
CTCGCGGGTCACCCTATCATGAGATTCAGTCCCATTCAAATCTTGCGGAA
CCAGGCGGCCAAAATCGTTCTCAATGATGCTC
BO14058.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-PB | 1575 | CG10175-RB | 1098..1572 | 493..19 | 2375 | 100 | Minus |
| CG10175-PC | 1980 | CG10175-RC | 1503..1977 | 493..19 | 2375 | 100 | Minus |
| CG10175-PA | 1935 | CG10175-RA | 1458..1932 | 493..19 | 2375 | 100 | Minus |
| CG10175-PB | 1575 | CG10175-RB | 960..1098 | 632..494 | 670 | 99.2 | Minus |
| CG10175-PC | 1980 | CG10175-RC | 1365..1503 | 632..494 | 670 | 99.2 | Minus |
| CG10175-PA | 1935 | CG10175-RA | 1320..1458 | 632..494 | 670 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RD | 2726 | CG10175-RD | 1739..2351 | 632..19 | 3030 | 99.7 | Minus |
| CG10175-RE | 2809 | CG10175-RE | 1383..1995 | 632..19 | 3030 | 99.7 | Minus |
| CG10175-RA | 2370 | CG10175-RA | 1383..1995 | 632..19 | 3030 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23523322..23523603 | 206..487 | 1410 | 100 | Plus |
| 3R | 32079331 | 3R | 23523078..23523265 | 19..206 | 940 | 100 | Plus |
| 3R | 32079331 | 3R | 23523674..23523812 | 494..632 | 680 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:08:12 has no hits.
BO14058.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:17:58 Download gff for
BO14058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-PA | 1320..1935 | 15..632 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:55 Download gff for
BO14058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-PA | 1320..1935 | 15..632 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:39:01 Download gff for
BO14058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 1476..2091 | 15..632 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:31 Download gff for
BO14058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 1383..1998 | 15..632 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:31 Download gff for
BO14058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23523668..23523812 | 487..632 | 98 | | Plus |
| 3R | 23523074..23523264 | 15..205 | 98 | <- | Plus |
| 3R | 23523322..23523602 | 206..486 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:39:01 Download gff for
BO14058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19348796..19348986 | 15..205 | 98 | <- | Plus |
| arm_3R | 19349044..19349324 | 206..486 | 100 | <- | Plus |
| arm_3R | 19349390..19349534 | 487..632 | 98 | | Plus |
BO14058.5prime Sequence
608 bp (569 high quality bases) assembled on 2006-05-29
> BO14058.5prime
GAAGTTATCAGTCGACATGACAACCACTGGACTTCGACCACTGCTGAGCC
TTCTGTTCCTTGGATTGGGTGTGATACTCCTCTGTGATGTCAGCTCCTCG
ATTGCCATAGCTCCGTCCACATTTGGCACGGCAATAGCACGTGCTGGGAA
GATATCCAACCAGCTTAAGGAGACGACGGCATGGAAGACCCTGACATCGC
ATCCGAACTCGCTTGTCCAACTGTTGCCATCGAGGGCCATGCGAGTGGTC
CAGGAGGTGGTAAGATCTCTGCGGAAGGAGCGTGAGATTGTGGCCACTAC
CTCGTTGGGAAAAGTCAGGGGTCGCTATCAGAAGTATCGATCCGGAGAGC
GAGGAGGCTACTATAGTTTCAAAGGAATGCGATATGGAGCTCCGCCTACA
GGAGCAAGAAGATTCCGTGCTGCGGAGCCGGAGAAGCCGTGGTCTGGAAT
CCGTGATGCTTCTCGGGAAGGTCAGAGCTGTCCGCATAAGAACATGATCC
TGGACACTTTCAAGGGAGACGAGGATTGCCTGTTCGTCAATGTGTTCACA
ACCCAAATGCCCAAGGATGATGAGTCTGCAGAGCACCCAAAGCTTCCTGT
TATGGTTT
BO14058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-PC | 1980 | CG10175-RC | 46..637 | 17..608 | 2910 | 99.6 | Plus |
| CG10175-PA | 1935 | CG10175-RA | 1..592 | 17..608 | 2910 | 99.6 | Plus |
| CG10175-PB | 1575 | CG10175-RB | 1..232 | 377..608 | 1135 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RE | 2809 | CG10175-RE | 64..655 | 17..608 | 2930 | 99.7 | Plus |
| CG10175-RA | 2370 | CG10175-RA | 64..655 | 17..608 | 2930 | 99.7 | Plus |
| CG10175-RC | 2463 | CG10175-RC | 157..748 | 17..608 | 2930 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23524601..23524800 | 608..409 | 985 | 99.5 | Minus |
| 3R | 32079331 | 3R | 23528675..23528828 | 170..17 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 23524853..23524990 | 411..274 | 675 | 99.3 | Minus |
| 3R | 32079331 | 3R | 23525496..23525602 | 274..168 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:36:43 has no hits.
BO14058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:00 Download gff for
BO14058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-PA | 1..592 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:57 Download gff for
BO14058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-PA | 1..592 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:06 Download gff for
BO14058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 157..748 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:50 Download gff for
BO14058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 157..748 | 17..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:50 Download gff for
BO14058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23524601..23524797 | 412..608 | 99 | <- | Minus |
| 3R | 23524853..23524989 | 275..411 | 99 | <- | Minus |
| 3R | 23525496..23525600 | 170..274 | 100 | <- | Minus |
| 3R | 23528676..23528828 | 17..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:06 Download gff for
BO14058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19354398..19354550 | 17..169 | 100 | | Minus |
| arm_3R | 19350323..19350519 | 412..608 | 99 | <- | Minus |
| arm_3R | 19350575..19350711 | 275..411 | 99 | <- | Minus |
| arm_3R | 19351218..19351322 | 170..274 | 100 | <- | Minus |
BO14058.complete Sequence
1966 bp assembled on 2008-08-14
GenBank Submission: FJ633011
> BO14058.complete
GAAGTTATCAGTCGACATGACAACCACTGGACTTCGACCACTGCTGAGCC
TTCTGTTCCTTGGATTGGGTGTGATACTCCTCTGTGATGTCAGCTCCTCG
ATTGCCATAGCTCCGTCCACATTTGGCACGGCAATAGCACGTGCTGGGAA
GATATCCAACCAGCTTAAGGAGACGACGGCATGGAAGACCCTGACATCGC
ATCCGAACTCGCTTGTCCAACTGTTGCCATCGAGGGCCATGCGAGTGGTC
CAGGAGGTGGTAAGATCTCTGCGGAAGGAGCGTGAGATTGTGGCCACTAC
CTCGTTGGGAAAAGTCAGGGGTCGCTATCAGAAGTATCGATCCGGAGAGC
GAGGAGGCTACTATAGTTTCAAAGGAATGCGATATGGAGCTCCGCCTACA
GGAGCAAGAAGATTCCGTGCTGCGGAGCCGGAGAAGCCGTGGTCTGGAAT
CCGTGATGCTTCTCGGGAAGGTCAGAGCTGTCCGCATAAGAACATGATCC
TGGACACTTTCAAGGGAGACGAGGATTGCCTGTTCGTCAATGTGTTCACA
ACCCAAATGCCCAAGGATGATGAGTCTGCAGAGCAGCCAAAGCTTCCTGT
TATGGTTTGGCTGCATGGAGGAGGTTTCTCCTTTGGCTCCGGCAACTCTT
TCCTCTACGGACCGGACTATCTAGTGGCTGAGGATATTGTCTTGGTCACA
CTGAACTACCGACTAGGTCCACTGGGTTTTCTTACCGCAGGACCTGACGC
TCCAGGTAACCAGGGTCTCAAGGATCAGGTACTGGCACTAAAGTGGGTGC
GGGATAACATAGCCGCATTTGGTGGAGATCCCAATCAGGTTACCATTTTC
GGAGAGTCAGCTGGAGCTTCGTCCGTCCAGTTGCTCCTCCTGTCCTCCCA
GGCCAAGGGACTTTTCCACCGAGCGATTTCCCAAAGTGGATCGGCCCTAA
ATCCATGGTCCATGTCCGCCAGTTCGAGCCAGAGAGCTGCTCGGCTGGCA
GCCAACTTGGGTTACGTGGGGGCCAATAAAACAGAGGATATCCTCGACTT
TCTTAGAAGGGTTCCAGCCATGAAATTGGTTGAAGCCGCGCCCACAACAA
TCACGGCGGAGGATCAGCGGAATAACATTGGTTTGCCATTTGTGCCCGTG
GTGGAGGGATATTGGAATCAGGACTCTCAGGAGGAACAGTTCTACGAGGA
GCCATTCCTTACTCAGCACCCTAGCGACATGTATCATTCGCAGAATTTTA
ACAGCGATGTGGCCTATATGACGGGTTACAATACACACGAGGCCATGCTG
TTCATAAGAAGACTTCGCAAGAATCCCCAGTTGCTGAGCATCATTGAGAA
CGATTTTGGCCGCCTGGTTCCGCAAGATTTGAATGTGACTGAATCTCATG
ATAGGGTGACCCGCGAGATAAGATCCTTCTACTTGGGAAGCAAGCATGTG
GGCATTGAATCAGTGGACGAGATGATTGCGCTCCTCACGGATCTCATGTT
CCTTCAGGGCATCCGTCGCACAGCCCGAAATCATGCCAAGTTTGGAAATG
CACCTGTCTACATGTACCGCTTCTCCTTCGACGGATCTTTGGGGCTCTAC
AAACGGATGCTGGGTATTCCCCGACCTGGTGTTTGCCATGGCGATGAGCT
GGGTTATCTGTTCAAGTTCGGTTTCTTCAATTTGAGCTTGGATCCCAAGT
CGATGGAGGTACAGGTCAAGAATCGAATGGTGCGCATGTGGACGAATTTC
GCGAAATATGGCTCTCCTACGCCTGATTCCGAGGATCCTATGCTGACCAC
CAAGTGGGCACCAATCGATCCCACCAATGTGATGAACAGTCTCAACTATA
TGGATATCTCAGCCAATCTGGCGATGAAAACCAATCCCGAGCCGGAGCGT
CAGAGATTCTGGGATGAGATGTATCAGCATTACAATGGGGCTGCCATGGC
AAGCTTTCTAGACCAT
BO14058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RE | 1935 | CG10175-PE | 1..1932 | 17..1948 | 9645 | 99.9 | Plus |
| CG10175-RA | 1935 | CG10175-PA | 1..1932 | 17..1948 | 9645 | 99.9 | Plus |
| CG10175-RC | 1980 | CG10175-PC | 46..1977 | 17..1948 | 9645 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RE | 2809 | CG10175-RE | 64..1995 | 17..1948 | 9645 | 99.9 | Plus |
| CG10175-RA | 2370 | CG10175-RA | 64..1995 | 17..1948 | 9645 | 99.9 | Plus |
| CG10175-RC | 2463 | CG10175-RC | 157..2088 | 17..1948 | 9645 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23523898..23524800 | 1311..409 | 4515 | 100 | Minus |
| 3R | 32079331 | 3R | 23523322..23523603 | 1761..1480 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 23523078..23523265 | 1948..1761 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 23523668..23523837 | 1480..1311 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 23528675..23528828 | 170..17 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 23524853..23524990 | 411..274 | 675 | 99.3 | Minus |
| 3R | 32079331 | 3R | 23525496..23525602 | 274..168 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:01:00 has no hits.
BO14058.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:29 Download gff for
BO14058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 60..1994 | 17..1952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:27 Download gff for
BO14058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 157..2088 | 17..1950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:16 Download gff for
BO14058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 60..1991 | 17..1950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:51 Download gff for
BO14058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 157..2088 | 17..1950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:51 Download gff for
BO14058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23523076..23523264 | 1762..1950 | 98 | <- | Minus |
| 3R | 23523322..23523602 | 1481..1761 | 100 | <- | Minus |
| 3R | 23523668..23523837 | 1311..1480 | 100 | <- | Minus |
| 3R | 23523899..23524797 | 412..1310 | 100 | <- | Minus |
| 3R | 23524853..23524989 | 275..411 | 99 | <- | Minus |
| 3R | 23525496..23525600 | 170..274 | 100 | <- | Minus |
| 3R | 23528676..23528828 | 17..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:27 Download gff for
BO14058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19351218..19351322 | 170..274 | 100 | <- | Minus |
| arm_3R | 19354398..19354550 | 17..169 | 100 | | Minus |
| arm_3R | 19349621..19350519 | 412..1310 | 100 | <- | Minus |
| arm_3R | 19348798..19348986 | 1762..1950 | 98 | <- | Minus |
| arm_3R | 19349044..19349324 | 1481..1761 | 100 | <- | Minus |
| arm_3R | 19349390..19349559 | 1311..1480 | 100 | <- | Minus |
| arm_3R | 19350575..19350711 | 275..411 | 99 | <- | Minus |
BO14058.pep Sequence
Translation from 16 to 1966
> BO14058.pep
MTTTGLRPLLSLLFLGLGVILLCDVSSSIAIAPSTFGTAIARAGKISNQL
KETTAWKTLTSHPNSLVQLLPSRAMRVVQEVVRSLRKEREIVATTSLGKV
RGRYQKYRSGERGGYYSFKGMRYGAPPTGARRFRAAEPEKPWSGIRDASR
EGQSCPHKNMILDTFKGDEDCLFVNVFTTQMPKDDESAEQPKLPVMVWLH
GGGFSFGSGNSFLYGPDYLVAEDIVLVTLNYRLGPLGFLTAGPDAPGNQG
LKDQVLALKWVRDNIAAFGGDPNQVTIFGESAGASSVQLLLLSSQAKGLF
HRAISQSGSALNPWSMSASSSQRAARLAANLGYVGANKTEDILDFLRRVP
AMKLVEAAPTTITAEDQRNNIGLPFVPVVEGYWNQDSQEEQFYEEPFLTQ
HPSDMYHSQNFNSDVAYMTGYNTHEAMLFIRRLRKNPQLLSIIENDFGRL
VPQDLNVTESHDRVTREIRSFYLGSKHVGIESVDEMIALLTDLMFLQGIR
RTARNHAKFGNAPVYMYRFSFDGSLGLYKRMLGIPRPGVCHGDELGYLFK
FGFFNLSLDPKSMEVQVKNRMVRMWTNFAKYGSPTPDSEDPMLTTKWAPI
DPTNVMNSLNYMDISANLAMKTNPEPERQRFWDEMYQHYNGAAMASFLDH
BO14058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-PE | 644 | CG10175-PE | 1..644 | 1..644 | 3370 | 100 | Plus |
| CG10175-PA | 644 | CG10175-PA | 1..644 | 1..644 | 3370 | 100 | Plus |
| CG10175-PC | 659 | CG10175-PC | 16..659 | 1..644 | 3370 | 100 | Plus |
| CG10175-PD | 707 | CG10175-PD | 115..707 | 52..644 | 3126 | 100 | Plus |
| CG10175-PB | 524 | CG10175-PB | 1..524 | 121..644 | 2776 | 100 | Plus |
