Clone Sequence Records
BO14059.3prime Sequence
706 bp (602 high quality bases) assembled on 2006-05-29
> BO14059.3prime
ATGGTCTAGAAAGCTTGCCATGAATGTGATCTTCGTGCGTCCCATGTTGA
CCTGCCAGACATTGAGCTCCTCGTAATCATCGATGCATTTGTCCACCTGG
TCGGGCTTGAATCCTTTGGTTGTGCAGCGGTCCATGATGTCGGAGATTTT
GACTGCCTTTCCAGAGCCAGCCAGTTCACGAACGATGGCAAAGATTCGAT
CCGAAGTGTTGGGTACGTGTCCCTTCTGGTGCTCGTGGATTTGGTTGAGC
GAGTCCTTAGACATCTCCAGCAGACGCAGTGCTTCAGCCACATCATCTTT
CTCCACGCTATCGGAAAGACGCAACCTAGCCAAAGCGGTGGACAACCGCA
GGATTCCCAACAAGTTACGTGCCGAGGTGAAGGTCATGTCCTTCTGGTTG
CGCGCCTCCCGACGCAACTCCACATAAGCTCCCACAATGTAGTCGGTGAG
CTCATCCGGAATAGTTGGATTCTTGCGCTTGCACAGGTTAATGTAGCGCC
GCATAAGATTCATGTCCAGAGCCTTTACTCGAGTGGGTGGCTGTTTGCTG
TGGCTATGCACATAGGTTATGTGCTTGGCCAAGCGCAAATCATTATCGCG
ATCCGGTTTATCCTGAATGAGCCACAGCAGATCGAAACGTGAGAGCAGGG
CTGCGGGAAGCTGAATGTTCTGCTCCACGGTACGACGAGGATTGTAGCGT
CCAAAA
BO14059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4978-PA | 2163 | Mcm7-RA | 1473..2160 | 706..19 | 3415 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm7-RA | 2451 | CG4978-RA | 1626..2313 | 706..19 | 3425 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8893423..8893911 | 706..218 | 2430 | 99.8 | Minus |
3L | 28110227 | 3L | 8893974..8894172 | 217..19 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 11:26:33 has no hits.
BO14059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:01 Download gff for
BO14059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-PA | 1477..2163 | 18..702 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:58 Download gff for
BO14059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4978-PA | 1477..2163 | 18..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:49:17 Download gff for
BO14059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 1630..2313 | 19..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:55:52 Download gff for
BO14059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 1630..2313 | 19..702 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:55:52 Download gff for
BO14059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8893427..8893911 | 218..702 | 99 | -> | Minus |
3L | 8893974..8894172 | 19..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:49:17 Download gff for
BO14059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8886527..8887011 | 218..702 | 99 | -> | Minus |
arm_3L | 8887074..8887272 | 19..217 | 100 | | Minus |
BO14059.5prime Sequence
696 bp (636 high quality bases) assembled on 2006-05-29
> BO14059.5prime
GAAGTTATCAGTCGACATGGCTCGACGAGATTATGCCCAAGACCGAGAAT
CTATCAAGACCTTCCTTTCGGAATTCTGCAAGTGCGACGATGATGGCAAA
AAGGAGTTCGTCTACGGATCTCAGCTGGTGAAGTTGGCCCATCGAGAGCA
AGTTCTGATCACCATCGATCTGGATGATCTGGCGGAATTCAATGAAAGTC
TCGCGGAGGCGGTGGTCGACAATTGTCGGCGATACACGTCCATATTCAGC
GATGTAATTGCTGAACTCCTGCCCAGCTACAAACAGCAGGAGGTACACGC
CAAGGATGCTCTGGATGTGTACATTGAGCACCGCCTGATGATGGAGTCCC
GCACCAGGAATCCCATGGAACAGCGCGATGAGCGGAACTCTTTCCCCTCG
GAGCTGATGAAGCGATTCGAGGTGGGCTTCAAACCACTGTCCACAGAGAA
GGCGCACTCTATTCGCGAGGTTAAGGCCCAGCACATTGGTAAACTGGTCA
CCGTTCGCGGCATTGTTACACGCTGCACGGAGGTTAAGCCCATGATGGTG
GTTGCCACCTACACATGCGATCGCTGTGGCTCGGAGACGTATCAGCCAGT
TAACTCGCTATCCTTCACGCCCGTGCACGATTGCCCGTCGGATGATTGCC
GAGTGAACAAAGCGGGAGGTCGTCTGTATCTGCAGACCCGCGGCTC
BO14059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4978-PA | 2163 | Mcm7-RA | 1..680 | 17..696 | 3400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm7-RA | 2451 | CG4978-RA | 154..833 | 17..696 | 3400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8891842..8892213 | 46..417 | 1860 | 100 | Plus |
3L | 28110227 | 3L | 8892285..8892563 | 418..696 | 1395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:38:40 has no hits.
BO14059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:02 Download gff for
BO14059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-PA | 1..680 | 17..696 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:59 Download gff for
BO14059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4978-PA | 1..680 | 17..696 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:32:46 Download gff for
BO14059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 154..833 | 17..696 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:58:39 Download gff for
BO14059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 154..833 | 17..696 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:58:39 Download gff for
BO14059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8891749..8891779 | 17..47 | 100 | -> | Plus |
3L | 8891844..8892213 | 48..417 | 100 | -> | Plus |
3L | 8892285..8892563 | 418..696 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:32:46 Download gff for
BO14059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8884849..8884879 | 17..47 | 100 | -> | Plus |
arm_3L | 8884944..8885313 | 48..417 | 100 | -> | Plus |
arm_3L | 8885385..8885663 | 418..696 | 100 | | Plus |
BO14059.complete Sequence
2194 bp assembled on 2008-08-14
GenBank Submission: FJ633012
> BO14059.complete
GAAGTTATCAGTCGACATGGCTCGACGAGATTATGCCCAAGACCGAGAAT
CTATCAAGACCTTCCTTTCGGAATTCTGCAAGTGCGACGATGATGGCAAA
AAGGAGTTCGTCTACGGATCTCAGCTGGTGAAGTTGGCCCATCGAGAGCA
AGTTCTGATCACCATCGATCTGGATGATCTGGCGGAATTCAATGAAAGTC
TCGCGGAGGCGGTGGTCGACAATTGTCGGCGATACACGTCCATATTCAGC
GATGTAATTGCTGAACTCCTGCCCAGCTACAAACAGCAGGAGGTACACGC
CAAGGATGCTCTGGATGTGTACATTGAGCACCGCCTGATGATGGAGTCCC
GCACCAGGAATCCCATGGAACAGCGCGATGAGCGGAACTCTTTCCCCTCG
GAGCTGATGAAGCGATTCGAGGTGGGCTTCAAACCACTGTCCACAGAGAA
GGCGCACTCTATTCGCGAGGTTAAGGCCCAGCACATTGGTAAACTGGTCA
CCGTTCGCGGCATTGTTACACGCTGCACGGAGGTTAAGCCCATGATGGTG
GTTGCCACCTACACATGCGATCGCTGTGGCTCGGAGACGTATCAGCCAGT
TAACTCGCTATCCTTCACGCCCGTGCACGATTGCCCGTCGGATGATTGCC
GAGTGAACAAAGCGGGAGGTCGTCTGTATCTGCAGACCCGCGGCTCCAAG
TTCGTCAAGTTCCAGGAGGTCAAAATGCAGGAGCACAGCGACCAGGTGCC
CGTGGGCCACATTCCGCGCAGCATGACCATCATGTGCAGGGGTGAGGTCA
CTCGAATGGCCCAGCCTGGGGATCACATTGTGGTCTCTGGAGTGTTCTTG
CCACTAATGCGCACAGGTTTCGCTCAGATGATTCAGGGTTTGCTCTCGGA
GACATTCCTTCAAGCTCACCGCATCATCTGTATCAACAAGAACGACGAGA
TTTCGGACAAGGATGCCGAGCTGACTCCAGAAGAGCTGGAGGAATTGGCC
CAGGATGACTTCTACGAGCGCTTGGCCACCAGCTTGGCACCCGAAATCTA
TGGCCATTTGGATGTTAAGAAAGCGCTGCTCTTGCTGTTGGTCGGAGGAG
TTGACAAGCGGCCCGATGGCATGAAGATTCGTGGCAACATTAACATCTGC
CTGATGGGAGATCCCGGTGTGGCCAAGTCGCAGCTGCTGGGCTACATTAG
CCGATTGGCCGTGCGATCGCAGTACACCACAGGGCGAGGTTCTTCGGGGG
TGGGTCTTACCGCTGCGGTCATGAAGGACCCTCTCACAGGCGAGATGACA
TTGGAAGGAGGAGCTCTTGTGCTGGCTGATCAGGGAGTCTGCTGCATTGA
TGAGTTCGACAAGATGGCGGATCAGGATCGTACAGCCATTCACGAGGTGA
TGGAACAGCAGACCATTTCGATAGCCAAAGCAGGCATCATGACGACCCTA
AACGCTCGCGTTTCCATCCTGGCCGCTGCTAATCCCGCTTTTGGACGCTA
CAATCCTCGTCGTACCGTGGAGCAGAACATTCAGCTTCCCGCAGCCCTGC
TCTCACGTTTCGATCTGCTGTGGCTCATCCAGGATAAACCGGATCGCGAT
AATGATTTGCGCTTGGCCAAGCACATAACCTATGTGCATAGCCACAGCAA
ACAGCCACCCACTCGAGTAAAGGCTCTGGACATGAATCTTATGCGGCGCT
ACATTAACCTGTGCAAGCGCAAGAATCCAACTATTCCGGATGAGCTCACC
GACTACATTGTGGGAGCTTATGTGGAGTTGCGTCGGGAGGCGCGCAACCA
GAAGGACATGACCTTCACCTCGGCACGTAACTTGTTGGGAATCCTGCGGT
TGTCCACCGCTTTGGCTAGGTTGCGTCTTTCCGATAGCGTGGAGAAAGAT
GATGTGGCTGAAGCACTGCGTCTGCTGGAGATGTCTAAGGACTCGCTCAA
CCAAATCCACGAGCACCAGAAGGGACACGTACCCAACACTTCGGATCGAA
TCTTTGCCATCGTTCGTGAACTGGCTGGCTCTGGAAAGGCAGTCAAAATC
TCCGACATCATGGACCGCTGCACAACCAAAGGATTCAAGCCCGACCAGGT
GGACAAATGCATCGATGATTACGAGGAGCTCAATGTCTGGCAGGTCAACA
TGGGACGCACGAAGATCACATTCATGGCAAGCTTTCTAGACCAT
BO14059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm7-RA | 2163 | CG4978-PA | 1..2160 | 17..2176 | 10800 | 100 | Plus |
Mcm2-RA | 2664 | CG7538-PA | 1662..1787 | 1297..1422 | 240 | 79.4 | Plus |
Mcm5-RA | 2202 | CG4082-PA | 1321..1454 | 1346..1479 | 235 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm7-RA | 2451 | CG4978-RA | 154..2313 | 17..2176 | 10800 | 100 | Plus |
Mcm2-RA | 2898 | CG7538-RA | 1793..1918 | 1297..1422 | 240 | 79.4 | Plus |
Mcm5-RA | 2452 | CG4082-RA | 1462..1595 | 1346..1479 | 235 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8892854..8893911 | 920..1977 | 5290 | 100 | Plus |
3L | 28110227 | 3L | 8892285..8892786 | 418..919 | 2510 | 100 | Plus |
3L | 28110227 | 3L | 8891842..8892213 | 46..417 | 1860 | 100 | Plus |
3L | 28110227 | 3L | 8893974..8894172 | 1978..2176 | 995 | 100 | Plus |
3R | 32079331 | 3R | 8266762..8266887 | 1297..1422 | 240 | 79.4 | Plus |
3R | 32079331 | 3R | 10790097..10790230 | 1346..1479 | 235 | 78.4 | Plus |
X | 23542271 | X | 5325179..5325265 | 1322..1408 | 210 | 82.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:52:52 has no hits.
BO14059.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:34 Download gff for
BO14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 140..2299 | 17..2176 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:41 Download gff for
BO14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 154..2313 | 17..2178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:39 Download gff for
BO14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 140..2299 | 17..2178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:17 Download gff for
BO14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm7-RA | 154..2313 | 17..2178 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:17 Download gff for
BO14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8893974..8894172 | 1978..2178 | 99 | | Plus |
3L | 8891749..8891779 | 17..47 | 100 | -> | Plus |
3L | 8891844..8892213 | 48..417 | 100 | -> | Plus |
3L | 8892285..8892786 | 418..919 | 100 | -> | Plus |
3L | 8892854..8893911 | 920..1977 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:41 Download gff for
BO14059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8884849..8884879 | 17..47 | 100 | -> | Plus |
arm_3L | 8884944..8885313 | 48..417 | 100 | -> | Plus |
arm_3L | 8885385..8885886 | 418..919 | 100 | -> | Plus |
arm_3L | 8885954..8887011 | 920..1977 | 100 | -> | Plus |
arm_3L | 8887074..8887272 | 1978..2178 | 99 | | Plus |
BO14059.pep Sequence
Translation from 16 to 2194
> BO14059.pep
MARRDYAQDRESIKTFLSEFCKCDDDGKKEFVYGSQLVKLAHREQVLITI
DLDDLAEFNESLAEAVVDNCRRYTSIFSDVIAELLPSYKQQEVHAKDALD
VYIEHRLMMESRTRNPMEQRDERNSFPSELMKRFEVGFKPLSTEKAHSIR
EVKAQHIGKLVTVRGIVTRCTEVKPMMVVATYTCDRCGSETYQPVNSLSF
TPVHDCPSDDCRVNKAGGRLYLQTRGSKFVKFQEVKMQEHSDQVPVGHIP
RSMTIMCRGEVTRMAQPGDHIVVSGVFLPLMRTGFAQMIQGLLSETFLQA
HRIICINKNDEISDKDAELTPEELEELAQDDFYERLATSLAPEIYGHLDV
KKALLLLLVGGVDKRPDGMKIRGNINICLMGDPGVAKSQLLGYISRLAVR
SQYTTGRGSSGVGLTAAVMKDPLTGEMTLEGGALVLADQGVCCIDEFDKM
ADQDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPAFGRYNPRRT
VEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPTR
VKALDMNLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTF
TSARNLLGILRLSTALARLRLSDSVEKDDVAEALRLLEMSKDSLNQIHEH
QKGHVPNTSDRIFAIVRELAGSGKAVKISDIMDRCTTKGFKPDQVDKCID
DYEELNVWQVNMGRTKITFMASFLDH
BO14059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm7-PA | 720 | CG4978-PA | 1..720 | 1..720 | 3705 | 100 | Plus |
dpa-PB | 866 | CG1616-PB | 252..766 | 126..636 | 854 | 38.6 | Plus |
dpa-PA | 866 | CG1616-PA | 252..766 | 126..636 | 854 | 38.6 | Plus |
Mcm3-PB | 818 | CG4206-PB | 97..645 | 136..640 | 818 | 37.8 | Plus |
Mcm5-PA | 733 | CG4082-PA | 35..646 | 10..640 | 817 | 33 | Plus |