Clone BO14059 Report

Search the DGRC for BO14059

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptMcm7-RA
Protein status:BO14059.pep: Imported from assembly
Sequenced Size:2194

Clone Sequence Records

BO14059.3prime Sequence

706 bp (602 high quality bases) assembled on 2006-05-29

> BO14059.3prime
ATGGTCTAGAAAGCTTGCCATGAATGTGATCTTCGTGCGTCCCATGTTGA
CCTGCCAGACATTGAGCTCCTCGTAATCATCGATGCATTTGTCCACCTGG
TCGGGCTTGAATCCTTTGGTTGTGCAGCGGTCCATGATGTCGGAGATTTT
GACTGCCTTTCCAGAGCCAGCCAGTTCACGAACGATGGCAAAGATTCGAT
CCGAAGTGTTGGGTACGTGTCCCTTCTGGTGCTCGTGGATTTGGTTGAGC
GAGTCCTTAGACATCTCCAGCAGACGCAGTGCTTCAGCCACATCATCTTT
CTCCACGCTATCGGAAAGACGCAACCTAGCCAAAGCGGTGGACAACCGCA
GGATTCCCAACAAGTTACGTGCCGAGGTGAAGGTCATGTCCTTCTGGTTG
CGCGCCTCCCGACGCAACTCCACATAAGCTCCCACAATGTAGTCGGTGAG
CTCATCCGGAATAGTTGGATTCTTGCGCTTGCACAGGTTAATGTAGCGCC
GCATAAGATTCATGTCCAGAGCCTTTACTCGAGTGGGTGGCTGTTTGCTG
TGGCTATGCACATAGGTTATGTGCTTGGCCAAGCGCAAATCATTATCGCG
ATCCGGTTTATCCTGAATGAGCCACAGCAGATCGAAACGTGAGAGCAGGG
CTGCGGGAAGCTGAATGTTCTGCTCCACGGTACGACGAGGATTGTAGCGT
CCAAAA

BO14059.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4978-PA 2163 Mcm7-RA 1473..2160 706..19 3415 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm7-RA 2451 CG4978-RA 1626..2313 706..19 3425 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8893423..8893911 706..218 2430 99.8 Minus
3L 28110227 3L 8893974..8894172 217..19 995 100 Minus
Blast to na_te.dros performed on 2015-01-31 11:26:33 has no hits.

BO14059.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:01 Download gff for BO14059.3prime
Subject Subject Range Query Range Percent Splice Strand
Mcm7-PA 1477..2163 18..702 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:58 Download gff for BO14059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4978-PA 1477..2163 18..702 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:49:17 Download gff for BO14059.3prime
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 1630..2313 19..702 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:55:52 Download gff for BO14059.3prime
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 1630..2313 19..702 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:55:52 Download gff for BO14059.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8893427..8893911 218..702 99 -> Minus
3L 8893974..8894172 19..217 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:49:17 Download gff for BO14059.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8886527..8887011 218..702 99 -> Minus
arm_3L 8887074..8887272 19..217 100   Minus

BO14059.5prime Sequence

696 bp (636 high quality bases) assembled on 2006-05-29

> BO14059.5prime
GAAGTTATCAGTCGACATGGCTCGACGAGATTATGCCCAAGACCGAGAAT
CTATCAAGACCTTCCTTTCGGAATTCTGCAAGTGCGACGATGATGGCAAA
AAGGAGTTCGTCTACGGATCTCAGCTGGTGAAGTTGGCCCATCGAGAGCA
AGTTCTGATCACCATCGATCTGGATGATCTGGCGGAATTCAATGAAAGTC
TCGCGGAGGCGGTGGTCGACAATTGTCGGCGATACACGTCCATATTCAGC
GATGTAATTGCTGAACTCCTGCCCAGCTACAAACAGCAGGAGGTACACGC
CAAGGATGCTCTGGATGTGTACATTGAGCACCGCCTGATGATGGAGTCCC
GCACCAGGAATCCCATGGAACAGCGCGATGAGCGGAACTCTTTCCCCTCG
GAGCTGATGAAGCGATTCGAGGTGGGCTTCAAACCACTGTCCACAGAGAA
GGCGCACTCTATTCGCGAGGTTAAGGCCCAGCACATTGGTAAACTGGTCA
CCGTTCGCGGCATTGTTACACGCTGCACGGAGGTTAAGCCCATGATGGTG
GTTGCCACCTACACATGCGATCGCTGTGGCTCGGAGACGTATCAGCCAGT
TAACTCGCTATCCTTCACGCCCGTGCACGATTGCCCGTCGGATGATTGCC
GAGTGAACAAAGCGGGAGGTCGTCTGTATCTGCAGACCCGCGGCTC

BO14059.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4978-PA 2163 Mcm7-RA 1..680 17..696 3400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm7-RA 2451 CG4978-RA 154..833 17..696 3400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8891842..8892213 46..417 1860 100 Plus
3L 28110227 3L 8892285..8892563 418..696 1395 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:38:40 has no hits.

BO14059.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:02 Download gff for BO14059.5prime
Subject Subject Range Query Range Percent Splice Strand
Mcm7-PA 1..680 17..696 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:09:59 Download gff for BO14059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4978-PA 1..680 17..696 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:32:46 Download gff for BO14059.5prime
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 154..833 17..696 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:58:39 Download gff for BO14059.5prime
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 154..833 17..696 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:58:39 Download gff for BO14059.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8891749..8891779 17..47 100 -> Plus
3L 8891844..8892213 48..417 100 -> Plus
3L 8892285..8892563 418..696 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:32:46 Download gff for BO14059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8884849..8884879 17..47 100 -> Plus
arm_3L 8884944..8885313 48..417 100 -> Plus
arm_3L 8885385..8885663 418..696 100   Plus

BO14059.complete Sequence

2194 bp assembled on 2008-08-14

GenBank Submission: FJ633012

> BO14059.complete
GAAGTTATCAGTCGACATGGCTCGACGAGATTATGCCCAAGACCGAGAAT
CTATCAAGACCTTCCTTTCGGAATTCTGCAAGTGCGACGATGATGGCAAA
AAGGAGTTCGTCTACGGATCTCAGCTGGTGAAGTTGGCCCATCGAGAGCA
AGTTCTGATCACCATCGATCTGGATGATCTGGCGGAATTCAATGAAAGTC
TCGCGGAGGCGGTGGTCGACAATTGTCGGCGATACACGTCCATATTCAGC
GATGTAATTGCTGAACTCCTGCCCAGCTACAAACAGCAGGAGGTACACGC
CAAGGATGCTCTGGATGTGTACATTGAGCACCGCCTGATGATGGAGTCCC
GCACCAGGAATCCCATGGAACAGCGCGATGAGCGGAACTCTTTCCCCTCG
GAGCTGATGAAGCGATTCGAGGTGGGCTTCAAACCACTGTCCACAGAGAA
GGCGCACTCTATTCGCGAGGTTAAGGCCCAGCACATTGGTAAACTGGTCA
CCGTTCGCGGCATTGTTACACGCTGCACGGAGGTTAAGCCCATGATGGTG
GTTGCCACCTACACATGCGATCGCTGTGGCTCGGAGACGTATCAGCCAGT
TAACTCGCTATCCTTCACGCCCGTGCACGATTGCCCGTCGGATGATTGCC
GAGTGAACAAAGCGGGAGGTCGTCTGTATCTGCAGACCCGCGGCTCCAAG
TTCGTCAAGTTCCAGGAGGTCAAAATGCAGGAGCACAGCGACCAGGTGCC
CGTGGGCCACATTCCGCGCAGCATGACCATCATGTGCAGGGGTGAGGTCA
CTCGAATGGCCCAGCCTGGGGATCACATTGTGGTCTCTGGAGTGTTCTTG
CCACTAATGCGCACAGGTTTCGCTCAGATGATTCAGGGTTTGCTCTCGGA
GACATTCCTTCAAGCTCACCGCATCATCTGTATCAACAAGAACGACGAGA
TTTCGGACAAGGATGCCGAGCTGACTCCAGAAGAGCTGGAGGAATTGGCC
CAGGATGACTTCTACGAGCGCTTGGCCACCAGCTTGGCACCCGAAATCTA
TGGCCATTTGGATGTTAAGAAAGCGCTGCTCTTGCTGTTGGTCGGAGGAG
TTGACAAGCGGCCCGATGGCATGAAGATTCGTGGCAACATTAACATCTGC
CTGATGGGAGATCCCGGTGTGGCCAAGTCGCAGCTGCTGGGCTACATTAG
CCGATTGGCCGTGCGATCGCAGTACACCACAGGGCGAGGTTCTTCGGGGG
TGGGTCTTACCGCTGCGGTCATGAAGGACCCTCTCACAGGCGAGATGACA
TTGGAAGGAGGAGCTCTTGTGCTGGCTGATCAGGGAGTCTGCTGCATTGA
TGAGTTCGACAAGATGGCGGATCAGGATCGTACAGCCATTCACGAGGTGA
TGGAACAGCAGACCATTTCGATAGCCAAAGCAGGCATCATGACGACCCTA
AACGCTCGCGTTTCCATCCTGGCCGCTGCTAATCCCGCTTTTGGACGCTA
CAATCCTCGTCGTACCGTGGAGCAGAACATTCAGCTTCCCGCAGCCCTGC
TCTCACGTTTCGATCTGCTGTGGCTCATCCAGGATAAACCGGATCGCGAT
AATGATTTGCGCTTGGCCAAGCACATAACCTATGTGCATAGCCACAGCAA
ACAGCCACCCACTCGAGTAAAGGCTCTGGACATGAATCTTATGCGGCGCT
ACATTAACCTGTGCAAGCGCAAGAATCCAACTATTCCGGATGAGCTCACC
GACTACATTGTGGGAGCTTATGTGGAGTTGCGTCGGGAGGCGCGCAACCA
GAAGGACATGACCTTCACCTCGGCACGTAACTTGTTGGGAATCCTGCGGT
TGTCCACCGCTTTGGCTAGGTTGCGTCTTTCCGATAGCGTGGAGAAAGAT
GATGTGGCTGAAGCACTGCGTCTGCTGGAGATGTCTAAGGACTCGCTCAA
CCAAATCCACGAGCACCAGAAGGGACACGTACCCAACACTTCGGATCGAA
TCTTTGCCATCGTTCGTGAACTGGCTGGCTCTGGAAAGGCAGTCAAAATC
TCCGACATCATGGACCGCTGCACAACCAAAGGATTCAAGCCCGACCAGGT
GGACAAATGCATCGATGATTACGAGGAGCTCAATGTCTGGCAGGTCAACA
TGGGACGCACGAAGATCACATTCATGGCAAGCTTTCTAGACCAT

BO14059.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm7-RA 2163 CG4978-PA 1..2160 17..2176 10800 100 Plus
Mcm2-RA 2664 CG7538-PA 1662..1787 1297..1422 240 79.4 Plus
Mcm5-RA 2202 CG4082-PA 1321..1454 1346..1479 235 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm7-RA 2451 CG4978-RA 154..2313 17..2176 10800 100 Plus
Mcm2-RA 2898 CG7538-RA 1793..1918 1297..1422 240 79.4 Plus
Mcm5-RA 2452 CG4082-RA 1462..1595 1346..1479 235 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8892854..8893911 920..1977 5290 100 Plus
3L 28110227 3L 8892285..8892786 418..919 2510 100 Plus
3L 28110227 3L 8891842..8892213 46..417 1860 100 Plus
3L 28110227 3L 8893974..8894172 1978..2176 995 100 Plus
3R 32079331 3R 8266762..8266887 1297..1422 240 79.4 Plus
3R 32079331 3R 10790097..10790230 1346..1479 235 78.4 Plus
X 23542271 X 5325179..5325265 1322..1408 210 82.8 Plus
Blast to na_te.dros performed on 2014-11-27 16:52:52 has no hits.

BO14059.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:34 Download gff for BO14059.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 140..2299 17..2176 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:41 Download gff for BO14059.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 154..2313 17..2178 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:39 Download gff for BO14059.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 140..2299 17..2178 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:17 Download gff for BO14059.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm7-RA 154..2313 17..2178 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:17 Download gff for BO14059.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8893974..8894172 1978..2178 99   Plus
3L 8891749..8891779 17..47 100 -> Plus
3L 8891844..8892213 48..417 100 -> Plus
3L 8892285..8892786 418..919 100 -> Plus
3L 8892854..8893911 920..1977 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:41 Download gff for BO14059.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8884849..8884879 17..47 100 -> Plus
arm_3L 8884944..8885313 48..417 100 -> Plus
arm_3L 8885385..8885886 418..919 100 -> Plus
arm_3L 8885954..8887011 920..1977 100 -> Plus
arm_3L 8887074..8887272 1978..2178 99   Plus

BO14059.pep Sequence

Translation from 16 to 2194

> BO14059.pep
MARRDYAQDRESIKTFLSEFCKCDDDGKKEFVYGSQLVKLAHREQVLITI
DLDDLAEFNESLAEAVVDNCRRYTSIFSDVIAELLPSYKQQEVHAKDALD
VYIEHRLMMESRTRNPMEQRDERNSFPSELMKRFEVGFKPLSTEKAHSIR
EVKAQHIGKLVTVRGIVTRCTEVKPMMVVATYTCDRCGSETYQPVNSLSF
TPVHDCPSDDCRVNKAGGRLYLQTRGSKFVKFQEVKMQEHSDQVPVGHIP
RSMTIMCRGEVTRMAQPGDHIVVSGVFLPLMRTGFAQMIQGLLSETFLQA
HRIICINKNDEISDKDAELTPEELEELAQDDFYERLATSLAPEIYGHLDV
KKALLLLLVGGVDKRPDGMKIRGNINICLMGDPGVAKSQLLGYISRLAVR
SQYTTGRGSSGVGLTAAVMKDPLTGEMTLEGGALVLADQGVCCIDEFDKM
ADQDRTAIHEVMEQQTISIAKAGIMTTLNARVSILAAANPAFGRYNPRRT
VEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAKHITYVHSHSKQPPTR
VKALDMNLMRRYINLCKRKNPTIPDELTDYIVGAYVELRREARNQKDMTF
TSARNLLGILRLSTALARLRLSDSVEKDDVAEALRLLEMSKDSLNQIHEH
QKGHVPNTSDRIFAIVRELAGSGKAVKISDIMDRCTTKGFKPDQVDKCID
DYEELNVWQVNMGRTKITFMASFLDH

BO14059.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm7-PA 720 CG4978-PA 1..720 1..720 3705 100 Plus
dpa-PB 866 CG1616-PB 252..766 126..636 854 38.6 Plus
dpa-PA 866 CG1616-PA 252..766 126..636 854 38.6 Plus
Mcm3-PB 818 CG4206-PB 97..645 136..640 818 37.8 Plus
Mcm5-PA 733 CG4082-PA 35..646 10..640 817 33 Plus