Clone Sequence Records
BO14061.3prime Sequence
716 bp (676 high quality bases) assembled on 2006-05-29
> BO14061.3prime
ATGGTCTAGAAAGCTTGCTAGCTTGGCCTCCACAACAGGTGCCTCCTTTT
CCACCTGCAGATGACTCGAAAGCTGGCTATCCTCCTGGCAGAACCGCACA
TTACCCATCACGGGCAGCATCTGCTGCACTTTGAGGCTCATGTTCTGCAG
GATTAGCAGGACATCGTGGCTGGCCATCTCCTTGGCCACCGATATCAGCA
TCTCACTGAAGGTGGCATCGAACTGCATAAAGCGTGCGCAATCGAGAACC
ACTGGGAAATCATTGTGATACAATCTGCATGCTCCTCGCAACTCAGATCG
TAGTGCATCGACGCCTGTGTAATAGACATCCGATTGGGGAACGATGTGCA
CATAGTACGTGGATTCATGCTGTTTAAGGGTGACCTCAAATTTGGGGTTA
CCCAAGCGCAGCAATATAAACACCATGCTGAGAACAATGCCAAAGAGAAG
ACCCAACTCGACGCCAGCCACCAAACAGATGATAAAACTTCCCACCCAGC
TAAAGAAGTCCTTTTTGTTGGTCTGCCATAGCTCCTTAACTGGAGCAAGA
TCAATCATAAAGATGACTGCTGCTATTAAAACTGCCGATAGGGAAGCCTT
TGGAATGTACTGGAAGTAGGGGGTCAGGATGCTCAATGCGGAGAGCACTA
TCAATCCCGTGTAGATGCCAGCCATTGGCGTTCGTACTCCAGATGCCTGA
CTCACCGCCGAGCGGG
BO14061.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-PB | 1836 | CG6125-RB | 1136..1833 | 716..19 | 3490 | 100 | Minus |
| CG6125-PA | 1923 | CG6125-RA | 1223..1920 | 716..19 | 3490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-RC | 2406 | CG6125-RC | 1275..1972 | 716..19 | 3490 | 100 | Minus |
| CG6125-RA | 2153 | CG6125-RA | 1231..1928 | 716..19 | 3490 | 100 | Minus |
| CG6125-RB | 2197 | CG6125-RB | 1275..1972 | 716..19 | 3490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15403032..15403384 | 19..371 | 1765 | 100 | Plus |
| 3R | 32079331 | 3R | 15403439..15403625 | 370..556 | 935 | 100 | Plus |
| 3R | 32079331 | 3R | 15403686..15403846 | 556..716 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:02:31 has no hits.
BO14061.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:03 Download gff for
BO14061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-PA | 1223..1923 | 18..716 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:01 Download gff for
BO14061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-PA | 1223..1923 | 18..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:13:53 Download gff for
BO14061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 1272..1973 | 13..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:19 Download gff for
BO14061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 1275..1976 | 13..716 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:19 Download gff for
BO14061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15403028..15403382 | 13..369 | 99 | <- | Plus |
| 3R | 15403439..15403624 | 370..555 | 100 | <- | Plus |
| 3R | 15403686..15403846 | 556..716 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:13:53 Download gff for
BO14061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11228750..11229104 | 13..369 | 99 | <- | Plus |
| arm_3R | 11229161..11229346 | 370..555 | 100 | <- | Plus |
| arm_3R | 11229408..11229568 | 556..716 | 100 | | Plus |
BO14061.5prime Sequence
711 bp (673 high quality bases) assembled on 2006-05-29
> BO14061.5prime
GAAGTTATCAGTCGACATGCGTTGGCCGCGAAAGCACACGTTCGGCTTGT
GGCCCAAACGAAATGGTCGGAATCGCAGTAGTGGAGAAGCCACTGGGGGG
CAACCCCAGGCCACTGTGGCCACCATTTACGATCCTGGCTGCGAGGAGAA
GGAGAAGTACACGGCCCAGAATGGCGATGATTACTATGGCCAGGCGCACA
CCGTCGACCTGGACGTGGCCAGCAAGTACTCCAAGCCCAAGGAGGCCCAC
TGGCTGGTGCGGCGCATATTCTTCCTCAGCTGGATTACCAGTTACGATCG
AGAGCAGGCGTTCGCCGATTTGATTGCCGGCATCACCTTGGGCCTGACCA
TCATACCACAAAGTATTGCTTATGCCGCGCTGGCAGGACTCTCCTCGGAG
TACGGCCTGTACTCCGCCTTCATTGGCTCCATCATCTATGTTTTCTTTGG
GACGATACCACAGGTGTCCATTGGACCCACCAGTCTGATGGCCATTCTCA
CCCTGCAATTCTGCGCCGACAAACCGGTGCAGGTGGTCATCGTGCTGGCC
TTCCTCGCCGGTTTGGTGGAACTGGCCATGGGTGTGTTCCAGCTGGGATT
CATCGTGAGCTTCATACCAGCTCCGGTTACCAAGGCTTTTACATCCGGCA
CTGCGCTGATCGTGGTCTTTGCCCAGATCAAGAATCTCTTAGGTGTTCGC
ATAAAGGGATT
BO14061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-PA | 1923 | CG6125-RA | 1..695 | 17..711 | 3475 | 100 | Plus |
| CG6125-PB | 1836 | CG6125-RB | 32..608 | 135..711 | 2885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-RA | 2153 | CG6125-RA | 9..703 | 17..711 | 3475 | 100 | Plus |
| CG6125-RC | 2406 | CG6125-RC | 166..747 | 130..711 | 2895 | 99.8 | Plus |
| CG6125-RB | 2197 | CG6125-RB | 166..747 | 130..711 | 2895 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15404730..15405306 | 711..135 | 2885 | 100 | Minus |
| 3R | 32079331 | 3R | 15405380..15405497 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:25:57 has no hits.
BO14061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:04 Download gff for
BO14061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-PA | 1..695 | 17..711 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:02 Download gff for
BO14061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-PA | 1..695 | 17..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:06 Download gff for
BO14061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RA | 1..703 | 10..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:03 Download gff for
BO14061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RA | 1..703 | 10..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:03 Download gff for
BO14061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15404730..15405306 | 135..711 | 100 | <- | Minus |
| 3R | 15405380..15405508 | 7..134 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:06 Download gff for
BO14061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11230452..11231028 | 135..711 | 100 | <- | Minus |
| arm_3R | 11231102..11231230 | 7..134 | 97 | | Minus |
BO14061.complete Sequence
1954 bp assembled on 2008-08-14
GenBank Submission: FJ633013
> BO14061.complete
GAAGTTATCAGTCGACATGCGTTGGCCGCGAAAGCACACGTTCGGCTTGT
GGCCCAAACGAAATGGTCGGAATCGCAGTAGTGGAGAAGCCACTGGGGGG
CAACCCCAGGCCACTGTGGCCACCATTTACGATCCTGGCTGCGAGGAGAA
GGAGAAGTACACGGCCCAGAATGGCGATGATTACTATGGCCAGGCGCACA
CCGTCGACCTGGACGTGGCCAGCAAGTACTCCAAGCCCAAGGAGGCCCAC
TGGCTGGTGCGGCGCATATTCTTCCTCAGCTGGATTACCAGTTACGATCG
AGAGCAGGCGTTCGCCGATTTGATTGCCGGCATCACCTTGGGCCTGACCA
TCATACCACAAAGTATTGCTTATGCCGCGCTGGCAGGACTCTCCTCGGAG
TACGGCCTGTACTCCGCCTTCATTGGCTCCATCATCTATGTTTTCTTTGG
GACGATACCACAGGTGTCCATTGGACCCACCAGTCTGATGGCCATTCTCA
CCCTGCAATTCTGCGCCGACAAACCGGTGCAGGTGGTCATCGTGCTGGCC
TTCCTCGCCGGTTTGGTGGAACTGGCCATGGGTGTGTTCCAGCTGGGATT
CATCGTGAGCTTCATACCAGCTCCGGTTACCAAGGCTTTTACATCCGGCA
CTGCGCTGATCGTGGTCTTTGCCCAGATCAAGAATCTCTTAGGTGTTCGC
ATAAAGGGATTCCCCTCGATCGGTGACTTTTTCACCAATATCCGGCCCAC
GGATGCCGCCATGGGAATCTCGTGCATGGTTGTGCTACTTTCGCTGCGGC
TACTGTCGCAAGTGAATTTCAAGCAGGACACGCCTGTTACGCGTCGCCTT
AAGAAGATCCTGTGGTACATCAGTATTTCCCGCAATGCTCTGGTTGTCTT
CTTCACTGGCCTTTTGGTTTTCATCTGGGTGAAGAAGAGCTCCATTGAGG
CGGTCCCCTTTGCGCTTTCCTCAAAGGTTTCCTCGGCCATGCCCACAATC
AAGCTGCCGCCCTTCGCCTTCGAGTATCAGAATCGCACCTATGTGTTCAC
GGATATCCTCCATGAGCTGGGCAGCGGAATTGTTGTGGTGCCAATTGTGG
CGGTTTTGGCCAATGTGGCCATTGCCAAAGCCTTCGTCAAGGATGGCAAT
CTGGATGCCTCGCAGGAGATGCTTACTTTGGGTTTGTGCAACATAGCCGG
CTCCTTCTTCAGTGCCATGCCCACCTGCGGAGCCTTCACCCGCTCGGCGG
TGAGTCAGGCATCTGGAGTACGAACGCCAATGGCTGGCATCTACACGGGA
TTGATAGTGCTCTCCGCATTGAGCATCCTGACCCCCTACTTCCAGTACAT
TCCAAAGGCTTCCCTATCGGCAGTTTTAATAGCAGCAGTCATCTTTATGA
TTGATCTTGCTCCAGTTAAGGAGCTATGGCAGACCAACAAAAAGGACTTC
TTTAGCTGGGTGGGAAGTTTTATCATCTGTTTGGTGGCTGGCGTCGAGTT
GGGTCTTCTCTTTGGCATTGTTCTCAGCATGGTGTTTATATTGCTGCGCT
TGGGTAACCCCAAATTTGAGGTCACCCTTAAACAGCATGAATCCACGTAC
TATGTGCACATCGTTCCCCAATCGGATGTCTATTACACAGGCGTCGATGC
ACTACGATCTGAGTTGCGAGGAGCATGCAGATTGTATCACAATGATTTCC
CAGTGGTTCTCGATTGCGCACGCTTTATGCAGTTCGATGCCACCTTCAGT
GAGATGCTGATATCGGTGGCCAAGGAGATGGCCAGCCACGATGTCCTGCT
AATCCTGCAGAACATGAGCCTCAAAGTGCAGCAGATGCTGCCCGTGATGG
GTAATGTGCGGTTCTGCCAGGAGGATAGCCAGCTTTCGAGTCATCTGCAG
GTGGAAAAGGAGGCACCTGTTGTGGAGGCCAAGCTAGCAAGCTTTCTAGA
CCAT
BO14061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-RA | 1923 | CG6125-PA | 1..1920 | 17..1936 | 9600 | 100 | Plus |
| CG6125-RC | 1836 | CG6125-PC | 27..1833 | 130..1936 | 9020 | 99.9 | Plus |
| CG6125-RB | 1836 | CG6125-PB | 27..1833 | 130..1936 | 9020 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-RA | 2153 | CG6125-RA | 9..1928 | 17..1936 | 9600 | 100 | Plus |
| CG6125-RC | 2406 | CG6125-RC | 166..1972 | 130..1936 | 9020 | 99.9 | Plus |
| CG6125-RB | 2197 | CG6125-RB | 166..1972 | 130..1936 | 9020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15404642..15405306 | 799..135 | 3325 | 100 | Minus |
| 3R | 32079331 | 3R | 15403032..15403384 | 1936..1584 | 1765 | 100 | Minus |
| 3R | 32079331 | 3R | 15404020..15404357 | 1136..799 | 1690 | 100 | Minus |
| 3R | 32079331 | 3R | 15403686..15403949 | 1399..1136 | 1320 | 100 | Minus |
| 3R | 32079331 | 3R | 15403439..15403625 | 1585..1399 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 15405380..15405497 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:06:38 has no hits.
BO14061.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:27 Download gff for
BO14061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RA | 1..1932 | 10..1942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:56 Download gff for
BO14061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RA | 9..1928 | 17..1938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:47 Download gff for
BO14061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RA | 9..1928 | 17..1938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:26 Download gff for
BO14061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RA | 9..1928 | 17..1938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:26 Download gff for
BO14061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15404020..15404356 | 800..1136 | 100 | <- | Minus |
| 3R | 15403028..15403382 | 1586..1938 | 99 | <- | Minus |
| 3R | 15403439..15403624 | 1400..1585 | 100 | <- | Minus |
| 3R | 15403686..15403948 | 1137..1399 | 100 | <- | Minus |
| 3R | 15404642..15405306 | 135..799 | 100 | <- | Minus |
| 3R | 15405380..15405497 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:56 Download gff for
BO14061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11229742..11230078 | 800..1136 | 100 | <- | Minus |
| arm_3R | 11228750..11229104 | 1586..1938 | 99 | <- | Minus |
| arm_3R | 11229161..11229346 | 1400..1585 | 100 | <- | Minus |
| arm_3R | 11229408..11229670 | 1137..1399 | 100 | <- | Minus |
| arm_3R | 11230364..11231028 | 135..799 | 100 | <- | Minus |
| arm_3R | 11231102..11231219 | 17..134 | 100 | | Minus |
BO14061.pep Sequence
Translation from 16 to 1954
> BO14061.pep
MRWPRKHTFGLWPKRNGRNRSSGEATGGQPQATVATIYDPGCEEKEKYTA
QNGDDYYGQAHTVDLDVASKYSKPKEAHWLVRRIFFLSWITSYDREQAFA
DLIAGITLGLTIIPQSIAYAALAGLSSEYGLYSAFIGSIIYVFFGTIPQV
SIGPTSLMAILTLQFCADKPVQVVIVLAFLAGLVELAMGVFQLGFIVSFI
PAPVTKAFTSGTALIVVFAQIKNLLGVRIKGFPSIGDFFTNIRPTDAAMG
ISCMVVLLSLRLLSQVNFKQDTPVTRRLKKILWYISISRNALVVFFTGLL
VFIWVKKSSIEAVPFALSSKVSSAMPTIKLPPFAFEYQNRTYVFTDILHE
LGSGIVVVPIVAVLANVAIAKAFVKDGNLDASQEMLTLGLCNIAGSFFSA
MPTCGAFTRSAVSQASGVRTPMAGIYTGLIVLSALSILTPYFQYIPKASL
SAVLIAAVIFMIDLAPVKELWQTNKKDFFSWVGSFIICLVAGVELGLLFG
IVLSMVFILLRLGNPKFEVTLKQHESTYYVHIVPQSDVYYTGVDALRSEL
RGACRLYHNDFPVVLDCARFMQFDATFSEMLISVAKEMASHDVLLILQNM
SLKVQQMLPVMGNVRFCQEDSQLSSHLQVEKEAPVVEAKLASFLDH
BO14061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-PA | 640 | CG6125-PA | 1..640 | 1..640 | 3245 | 100 | Plus |
| CG6125-PC | 611 | CG6125-PC | 9..611 | 38..640 | 3027 | 99.7 | Plus |
| CG6125-PB | 611 | CG6125-PB | 9..611 | 38..640 | 3027 | 99.7 | Plus |
| CG5404-PA | 627 | CG5404-PA | 36..601 | 74..630 | 1035 | 38.9 | Plus |
| CG6928-PA | 612 | CG6928-PA | 6..593 | 79..640 | 993 | 39.2 | Plus |
