Clone Sequence Records
BO14066.3prime Sequence
620 bp (567 high quality bases) assembled on 2006-05-29
> BO14066.3prime
ATGGTCTAGAAAGCTTGCCTTTGCGACCGACTTGGAGGATCCATAATTAG
ATGCCTTGCTGATCTGCGTCTTGTTGATGGCCTGACCCATGAGCCAGTAA
AAAAGTCCCAGGACGGAAAGTGCGGTGATAAAGGCCGTCCAGTTGGCCGC
CAGCAGGGATGTGATCACGTAGTAGAAAATGCAGGACAGAGAGAATACCG
CCCAGCAGACAAAGTTCACGAGTGAGCACAGCCGGCGTTTATTCACATAT
GCCGGAACCTCCTTTATGCCGGACGTCTTAAAGAAGCTGCCCGTCTCCAG
GAAGCTATCGATGATCTTGTCCTTCTCCACGAACAGGTTCTGCAGCCAGG
CGGCCGCCTCCTTCTCATCCTCCGGAACCTGTTCCAGTGGAATACGCCTC
ATCAGCAGGTGCGGTTCCACGCTCTTTCCATGCAGCAAACTCAGCATTGT
GGCGGGGGTCTTATCTGTGGGCCTGTACGCTAAATTTAATGTCGTAGATT
ACCGGACAGAGACCGCGGATGGGTGCCAAGCTGGCGGTGAATCCCTTGGT
GCGCGGGATCAAATGGTGCTTCAGCACCGTCATGCCCCTCTCCTGGGCGA
ATTTTACGGATGCCTCGTGC
BO14066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-PA | 1161 | CG4729-RA | 695..1158 | 482..19 | 2320 | 100 | Minus |
| CG4729-PC | 1161 | CG4729-RC | 695..1158 | 482..19 | 2320 | 100 | Minus |
| CG4729-PB | 1161 | CG4729-RB | 695..1158 | 482..19 | 2320 | 100 | Minus |
| CG4729-PD | 432 | CG4729-RD | 1..429 | 447..19 | 2145 | 100 | Minus |
| CG4729-PA | 1161 | CG4729-RA | 558..692 | 620..486 | 675 | 100 | Minus |
| CG4729-PC | 1161 | CG4729-RC | 558..692 | 620..486 | 675 | 100 | Minus |
| CG4729-PB | 1161 | CG4729-RB | 558..692 | 620..486 | 675 | 100 | Minus |
| CG4753-PB | 1143 | CG4753-RB | 838..886 | 324..276 | 145 | 91.8 | Minus |
| CG4753-PA | 1143 | CG4753-RA | 838..886 | 324..276 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-RE | 1849 | CG4729-RE | 946..1546 | 620..19 | 2970 | 99.7 | Minus |
| CG4729-RB | 1672 | CG4729-RB | 769..1369 | 620..19 | 2970 | 99.7 | Minus |
| CG4729-RC | 1676 | CG4729-RC | 773..1373 | 620..19 | 2970 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16382382..16382741 | 102..461 | 1800 | 100 | Plus |
| 3L | 28110227 | 3L | 16383331..16383490 | 460..620 | 740 | 98.8 | Plus |
| 3L | 28110227 | 3L | 16382075..16382157 | 19..101 | 415 | 100 | Plus |
| 3L | 28110227 | 3L | 16379425..16379558 | 257..390 | 325 | 82.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:58:54 has no hits.
BO14066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:10 Download gff for
BO14066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-PC | 558..1161 | 15..620 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:11 Download gff for
BO14066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-PA | 558..1161 | 15..620 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:56:46 Download gff for
BO14066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RC | 773..1381 | 9..620 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:18 Download gff for
BO14066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RC | 773..1381 | 9..620 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:18 Download gff for
BO14066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16382067..16382157 | 9..101 | 96 | <- | Plus |
| 3L | 16382382..16382739 | 102..459 | 100 | <- | Plus |
| 3L | 16383331..16383490 | 460..620 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:56:46 Download gff for
BO14066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16375167..16375257 | 9..101 | 96 | <- | Plus |
| arm_3L | 16375482..16375839 | 102..459 | 100 | <- | Plus |
| arm_3L | 16376431..16376590 | 460..620 | 98 | | Plus |
BO14066.5prime Sequence
664 bp (593 high quality bases) assembled on 2006-05-29
> BO14066.5prime
GAAGTTATCAGTCGACATGGGTTCCCTGGAGAAGCTGAAACAATTGAGAC
TGATACACCTGTGCATCGCGCTCACCTTCTTTACCAGCGGGCTGTGCATC
AACTTTATCCAGCTGCTGATGCACGTCTTTATCAAGCCCATAGACAAGCG
ACTCTTCCGCAAGTTGATGTACTATGCCTGCTATTCGCTTTACTCCCAAC
TTATCTTCGTGTCCGATTGGTATGCCGGCAGCAAGATGACTGTCTACATG
GACAAGGAGGACTTCGAGAAGCATGCCGGCAAGGAACACGTCCTTCTGAT
CATGAACCATAAATACGAGATCGATTGGCTCAACGGCTGGATGATCTGCG
AAAAGTTGGGCGTGCTGGGCAACTGCAAGGCCTATGCGAAGAAGGCAATC
CGCTACGTGCCCATCATCGGCTGGGGCTGGTGGCTGGCCGAGTTCGTCTT
CCTCAATCGAAACTTCGACCAGGACAAGACCATCATCACCGAACAGCTCA
AGGTGGTCTTCTCCTATCCCGATCCCACCTGGCTTTTGCTCAACGCCGAG
GGCACTCGCTTCACTCCCGCCAAGCACGAGGCATCCGTAAAATTCGCCCA
GGAGAGGGGCATGACGGTGCTGAAGCACCATTTGATCCCGCGCACCAAGG
GATTCACCGCCAGC
BO14066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-PA | 1161 | CG4729-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
| CG4729-PC | 1161 | CG4729-RC | 1..648 | 17..664 | 3240 | 100 | Plus |
| CG4729-PB | 1161 | CG4729-RB | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-RE | 1849 | CG4729-RE | 389..1036 | 17..664 | 3240 | 100 | Plus |
| CG4729-RB | 1672 | CG4729-RB | 212..859 | 17..664 | 3240 | 100 | Plus |
| CG4729-RC | 1676 | CG4729-RC | 216..863 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16383400..16383866 | 664..198 | 2335 | 100 | Minus |
| 3L | 28110227 | 3L | 16383927..16384107 | 197..17 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 16379776..16380156 | 657..277 | 495 | 75.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:08:53 has no hits.
BO14066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:11 Download gff for
BO14066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:13 Download gff for
BO14066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-PB | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:54:42 Download gff for
BO14066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RC | 206..863 | 5..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:19 Download gff for
BO14066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RC | 206..863 | 5..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:19 Download gff for
BO14066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16383400..16383866 | 198..664 | 100 | <- | Minus |
| 3L | 16383927..16384119 | 5..197 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:54:42 Download gff for
BO14066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16376500..16376966 | 198..664 | 100 | <- | Minus |
| arm_3L | 16377027..16377219 | 5..197 | 97 | | Minus |
BO14066.complete Sequence
1192 bp assembled on 2008-11-10
GenBank Submission: KX797959
> BO14066.complete
GAAGTTATCAGTCGACATGGGTTCCCTGGAGAAGCTGAAACAATTGAGAC
TGATACACCTGTGCATCGCGCTCACCTTCTTTACCAGCGGGCTGTGCATC
AACTTTATCCAGCTGCTGATGCACGTCTTTATCAAGCCCATAGACAAGCG
ACTCTTCCGCAAGTTGATGTACTATGCCTGCTATTCGCTTTACTCCCAAC
TTATCTTCGTGTCCGATTGGTATGCCGGCAGCAAGATGACTGTCTACATG
GACAAGGAGGACTTCGAGAAGCATGCCGGCAAGGAACACGTCCTTCTGAT
CATGAACCATAAATACGAGATCGATTGGCTCAACGGCTGGATGATCTGCG
AAAAGTTGGGCGTGCTGGGCAACTGCAAGGCCTATGCGAAGAAGGCAATC
CGCTACGTGCCCATCATCGGCTGGGGCTGGTGGCTGGCCGAGTTCGTCTT
CCTCAATCGAAACTTCGACCAGGACAAGACCATCATCACCGAACAGCTCA
AGGTGGTCTTCTCCTATCCCGATCCCACCTGGCTTTTGCTCAACGCCGAG
GGCACTCGCTTCACTCCCGCCAAGCACGAGGCATCCGTAAAATTCGCCCA
GGAGAGGGGCATGACGGTGCTGAAGCACCATTTGATCCCGCGCACCAAGG
GATTCACCGCCAGCTTGGCACCCATCCGCGGTCTCTGTCCGGTAATCTAC
GACATTAATCTAGCGTACAGGCCCACAGATAAGACCCCCGCCACAATGCT
GAGTTTGCTGCATGGAAAGAGCGTGGAACCGCACCTGCTGATGAGGCGTA
TTCCACTGGAACAGGTTCCGGAGGATGAGAAGGAGGCGGCCGCCTGGCTG
CAGAACCTGTTCGTGGAGAAGGACAAGATCATCGATAGCTTCCTGGAGAC
GGGCAGCTTCTTTAAGACGTCCGGCATAAAGGAGGTTCCGGCATATGTGA
ATAAACGCCGGCTGTGCTCACTCGTGAACTTTGTCTGCTGGGCGGTATTC
TCTCTGTCCTGCATTTTCTACTACGTGATCACATCCCTGCTGGCGGCCAA
CTGGACGGCCTTTATCACCGCACTTTCCGTCCTGGGACTTTTTTACTGGC
TCATGGGTCAGGCCATCAACAAGACGCAGATCAGCAAGGCATCTAATTAT
GGATCCTCCAAGTCGGTCGCAAAGGCAAGCTTTCTAGACCAT
BO14066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-RE | 1194 | CG4729-PE | 34..1191 | 17..1174 | 5790 | 100 | Plus |
| CG4729-RB | 1161 | CG4729-PB | 1..1158 | 17..1174 | 5790 | 100 | Plus |
| CG4729-RC | 1161 | CG4729-PC | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-RE | 1849 | CG4729-RE | 389..1546 | 17..1174 | 5790 | 100 | Plus |
| CG4729-RB | 1672 | CG4729-RB | 212..1369 | 17..1174 | 5790 | 100 | Plus |
| CG4729-RC | 1676 | CG4729-RC | 216..1373 | 17..1174 | 5790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16383331..16383866 | 733..198 | 2680 | 100 | Minus |
| 3L | 28110227 | 3L | 16382382..16382741 | 1091..732 | 1800 | 100 | Minus |
| 3L | 28110227 | 3L | 16383927..16384107 | 197..17 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 16379722..16380156 | 711..277 | 540 | 74.9 | Minus |
| 3L | 28110227 | 3L | 16382075..16382157 | 1174..1092 | 415 | 100 | Minus |
| 3L | 28110227 | 3L | 16379425..16379558 | 936..803 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:38:54 has no hits.
BO14066.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:53 Download gff for
BO14066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 201..1377 | 5..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:26:56 Download gff for
BO14066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RC | 216..1373 | 17..1176 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:52 Download gff for
BO14066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 212..1369 | 17..1176 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:19 Download gff for
BO14066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RC | 216..1373 | 17..1176 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:19 Download gff for
BO14066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16382073..16382157 | 1092..1176 | 97 | <- | Minus |
| 3L | 16382382..16382739 | 734..1091 | 100 | <- | Minus |
| 3L | 16383331..16383866 | 198..733 | 100 | <- | Minus |
| 3L | 16383927..16384107 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:26:56 Download gff for
BO14066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16375173..16375257 | 1092..1176 | 97 | <- | Minus |
| arm_3L | 16375482..16375839 | 734..1091 | 100 | <- | Minus |
| arm_3L | 16376431..16376966 | 198..733 | 100 | <- | Minus |
| arm_3L | 16377027..16377207 | 17..197 | 100 | | Minus |
BO14066.pep Sequence
Translation from 16 to 1192
> BO14066.pep
MGSLEKLKQLRLIHLCIALTFFTSGLCINFIQLLMHVFIKPIDKRLFRKL
MYYACYSLYSQLIFVSDWYAGSKMTVYMDKEDFEKHAGKEHVLLIMNHKY
EIDWLNGWMICEKLGVLGNCKAYAKKAIRYVPIIGWGWWLAEFVFLNRNF
DQDKTIITEQLKVVFSYPDPTWLLLNAEGTRFTPAKHEASVKFAQERGMT
VLKHHLIPRTKGFTASLAPIRGLCPVIYDINLAYRPTDKTPATMLSLLHG
KSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKIIDSFLETGSFFK
TSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVITSLLAANWTAFI
TALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAKASFLDH
BO14066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-PB | 386 | CG4729-PB | 1..386 | 1..386 | 2043 | 100 | Plus |
| CG4729-PC | 386 | CG4729-PC | 1..386 | 1..386 | 2043 | 100 | Plus |
| CG4729-PA | 386 | CG4729-PA | 1..386 | 1..386 | 2043 | 100 | Plus |
| CG4729-PE | 397 | CG4729-PE | 12..397 | 1..386 | 2043 | 100 | Plus |
| CG4753-PC | 380 | CG4753-PC | 10..376 | 15..381 | 1268 | 62.7 | Plus |
