Clone Sequence Records
BO14067.3prime Sequence
755 bp (569 high quality bases) assembled on 2006-05-29
> BO14067.3prime
ATGGTCTAGAAAGCTTGCCGTGGTCCGCTCCTCGTCCGTACTGTTCCTGG
GCTCTTGATGACTGCGCATGGCCAGCGTGGCCACCTCAAAAAGGCCGATG
AAGAAGCAAAGCATAAGGGGTCCGAAAATAGCTCCTTGCCAACCGATCCA
ATACATTCCGCCTGCTATGGCCAGGCCGTTGAGGTAGGGATGTCCACCTT
TGAGGTCCGCATATATAGCAGTTTCAAAAGATGATGGCACGAAAAACTGA
AGCAGGAACAATATAAGTCCTGCATAGAAGCGGTCCTGGGCCAGCCAAAG
CTCTAGAAAGGCTGGCACCGCACACCAGTAACTGCCTAGGAAAGGAGCAG
CAGCCAACATAGCTGCCAAGGCGGACGGCAGGAACACAATCCGGGCCCCG
AAAACCGTATGGACTAACCAGGTGAACAGACCCGTAAAGGTGGAGCACCT
AAACATTGAGACTAGGACTACGGTAATGGAGTTTTCCAGGGCATCGGCGA
TTTTGATACCCGAGCTGGAATAGCCCAGGTATTTTGTGATCTGCAGGGGC
GCGTACTTCTCCTGACTGCTCGAGAGCAGGTAGAACAGAGCCGTAAAGAA
ATACAATCATATCTAGAATAAACTCAATGCACGCTTGTCCACCCGAAAAG
CACAAGGGATAGAATCTCCCCGGTCACGCCCATTTATCATGGACATGTTG
GCCCGGATGATGGTGCCCCACGACTCTGCAACCTCCAGGATCGTCTGCGT
ATTGC
BO14067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2698-PA | 2454 | CG2698-RA | 1870..2451 | 600..19 | 2910 | 100 | Minus |
CG2698-PA | 2454 | CG2698-RA | 1823..1871 | 648..600 | 245 | 100 | Minus |
CG2698-PA | 2454 | CG2698-RA | 1788..1825 | 684..647 | 190 | 100 | Minus |
CG2698-PA | 2454 | CG2698-RA | 1718..1753 | 755..720 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2698-RG | 3138 | CG2698-RG | 1967..2700 | 755..19 | 3520 | 98.9 | Minus |
CG2698-RE | 3162 | CG2698-RE | 1991..2724 | 755..19 | 3520 | 98.9 | Minus |
CG2698-RC | 3377 | CG2698-RC | 2206..2939 | 755..19 | 3520 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8004244..8004647 | 600..197 | 2020 | 100 | Minus |
3R | 32079331 | 3R | 8004713..8004864 | 197..46 | 760 | 100 | Minus |
3R | 32079331 | 3R | 8004033..8004178 | 755..608 | 535 | 93.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:32:33 has no hits.
BO14067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:12 Download gff for
BO14067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-PA | 1718..2454 | 16..755 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:15 Download gff for
BO14067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-PA | 1718..2454 | 16..755 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:18:14 Download gff for
BO14067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-RC | 2206..2945 | 11..755 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:04:11 Download gff for
BO14067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-RC | 2206..2945 | 11..755 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:04:11 Download gff for
BO14067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8004238..8004647 | 197..607 | 99 | -> | Minus |
3R | 8004714..8004863 | 47..196 | 100 | -> | Minus |
3R | 8004033..8004178 | 608..755 | 95 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:18:14 Download gff for
BO14067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3829755..3829900 | 608..755 | 95 | -> | Minus |
arm_3R | 3829960..3830369 | 197..607 | 99 | -> | Minus |
arm_3R | 3830436..3830585 | 47..196 | 100 | -> | Minus |
BO14067.5prime Sequence
591 bp (589 high quality bases) assembled on 2006-05-29
> BO14067.5prime
GAAGTTATCAGTCGACATGAATCGGTCCGAACCGATTCCCATTCGACGGG
ACCGCTCTTTTGACAGTGTGATCAACCGCCTGCTCCGTATGAGGTCCCAG
AATCATGAGAGCTTTCGCGCCGCCATGTACAATTTCCTGATCGCCGCAGG
AGTTGCGGCATTCGTCGCTGTGTGCTTCATTCTTGGGCCCTTCGTCCGTC
CATTGCTGTGGGCCTTCCTCATGGGCGCCGTGCTCTTTCCATTCAAGCGA
CGTTTGGCGGAGAGCGTAAACAGTTGGTTTCACCGCTTGGAGGTGCGCGA
CTCCAATGTACTGGTTTCGATCTGCCTATCGCCGCTGGAAGCCACAGAGC
ATTGCGGGCGGTTGCTGATCGGGTGGCTCTGCGAACACTGGCAACTCCTC
CTGGCCGGATGCGGAGTGGCCGGGTGCATTAAGCTGCTGGTTTTATATGC
ACCGAAGGGTTTTCTGCTGGCCATCTGGCATTGGATCACCTTTTCCCATG
GCTTGTTCGTTCAAATTATTGGATTCCTCAACGTATACGTGCTCATTTCC
TTGATCGTGGTCTACTTGAGCTGCGTCCACTTCTTTTGGAG
BO14067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2698-PA | 2454 | CG2698-RA | 1..575 | 17..591 | 2875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2698-RI | 3147 | CG2698-RI | 262..836 | 17..591 | 2875 | 100 | Plus |
CG2698-RH | 2976 | CG2698-RH | 262..836 | 17..591 | 2875 | 100 | Plus |
CG2698-RG | 3138 | CG2698-RG | 262..836 | 17..591 | 2875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8001922..8002458 | 17..553 | 2640 | 99.4 | Plus |
3R | 32079331 | 3R | 8002553..8002603 | 541..591 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 11:16:05 has no hits.
BO14067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:13 Download gff for
BO14067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-PA | 1..575 | 17..591 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:16 Download gff for
BO14067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-PA | 1..575 | 17..591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:43:23 Download gff for
BO14067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-RG | 262..836 | 17..591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:55 Download gff for
BO14067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-RG | 262..836 | 17..591 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:55 Download gff for
BO14067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8001922..8002446 | 17..541 | 100 | -> | Plus |
3R | 8002554..8002603 | 542..591 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:43:23 Download gff for
BO14067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3828276..3828325 | 542..591 | 100 | | Plus |
arm_3R | 3827644..3828168 | 17..541 | 100 | -> | Plus |
BO14067.complete Sequence
2485 bp assembled on 2008-08-14
GenBank Submission: FJ633015
> BO14067.complete
GAAGTTATCAGTCGACATGAATCGGTCCGAACCGATTCCCATTCGACGGG
ACCGCTCTTTTGACAGTGTGATCAACCGCCTGCTCCGTATGAGGTCCCAG
AATCATGAGAGCTTTCGCGCCGCCATGTACAATTTCCTGATCGCCGCAGG
AGTTGCGGCATTCGTCGCTGTGTGCTTCATTCTTGGGCCCTTCGTCCGTC
CATTGCTGTGGGCCTTCCTCATGGGCGCCGTGCTCTTTCCATTCAAGCGA
CGTTTGGCGGAGAGCGTAAACAGTTGGTTTCACCGCTTGGAGGTGCGCGA
CTCCAATGTACTGGTTTCGATCTGCCTATCGCCGCTGGAAGCCACAGAGC
ATTGCGGGCGGTTGCTGATCGGGTGGCTCTGCGAACACTGGCAACTCCTC
CTGGCCGGATGCGGAGTGGCCGGGTGCATTAAGCTGCTGGTTTTATATGC
ACCGAAGGGTTTTCTGCTGGCCATCTGGCATTGGATCACCTTTTCCCATG
GCTTGTTCGTTCAAATTATTGGATTCCTCAACGTATACGTGCTCATTTCC
TTGATCGTGGTCTACTTGAGCTGCGTCCACTTCTTTTGGAGGCCAGAGAA
TAGTGCCCACTTCGTGGTCGCCGGACAATCCATGTGGATAGCTGTAGCGG
GCTATCTGAGTAGCTTTCTTGGCGCCCTGCAGGTGCCGGTATTTCTACTG
GTTATGACCTATGTAACAGCATCTACGGCATATCATCTGCAAACCCTAGA
TGATTCGGGATCTTATCTTCACCGCCTGCAAAAGTTGTTCGACAAGAACG
ATTTTGAGCGATCGCTAAGCAACTTCAGCATTTGTGGCAGACCAGGCAAC
GAGCCACTGAGTCCGGGGCTGCAGTCGGATGTGGAGGATGTATCGTTAAG
TGACACTGTCGACTCGACGGACACGTTTGATGTCAAGCCAGAAACGGAGG
TTCCCAGTCACCAGAGCGACACATTCTTTAAGCTCCTTTTTTATGCCTGC
TTGGGCACATTCCTCTATCGCAACGTGTGGATGTTTATCCTAGCGGCAAT
CCCAGTAATTCTGCATCTTATTTACACCGTAGGAGAGTATACGGGAATTA
CTAAATTTGTTTGCAACAAAATTAGCGAAGTTTACGCAGCGCTGCGTTTC
TGGGCAATCGAACACCATTCTGCCGTGCTGCCACTCTGTCTACCTGGTGT
CCTGGAACTAAACTATAAAATCAACACTATCGTGCGGGATTCACTAAAGG
CCTCCGTTGAATCAGTCACCTCCATCCTAATGATCATCCTCATGCTGCTT
ATCATCGTGTTTCTAAGCGTGTTCTTCTGCGTGAACATTTACTCGGAGAC
GATTGAGGTGGCTTACCTGGGCAAGGATTTAATTAACAAGACGATCACAG
ATCGGCCTGAGCTAATTGACATCTTGCCTGCCAACATGCAATCGTCCATC
GAGGATGCTCTTGATAACGCACACCATTATGGTCGCCGTAAGATTGAAAC
CTACATAGACGACTGGCTGGCAGACGCCGATAAGGTGCACGCCACCAAGT
TGAAGGAGCAGATCCTCGAAGTGTGGGACCGGCTCATCCAGTATTGGATC
GATTTCAATAAGGCCGGTTCATCGTACGGGCCGCGGGTACCAACGGATGC
CCTGAAAAGCACATTTGGCGAAATCGTCGACAATCCAGAGCTAGTTTTAG
TGGCAAAACAGGGCATTATCGGCTGGGCGCAGAGCAATACGCAGACGATC
CTCGAGGTTGCAGAGTCGTTGTGGCACATCATCCGGACCAACATGTCCAT
GATAATGGGCGTGACCGGGGAGATTCTATCCCTTGTGCTTTCGGGTGGAC
AAGCGTGCATTGAGTTTATTCTAGATATGATTGTATTCTTTACGGCTCTG
TTCTACCTGCTCTCGAGCAGTCAGGAGAAGTACGCGCCCCTGCAGATCAC
AAAATACCTGGGCTATTCCAGCTCGGGTATCAAAATCGCCGATGCCCTGG
AAAACTCCATTACCGTAGTCCTAGTCTCAATGTTTAGGTGCTCCACCTTT
ACGGGTCTGTTCACCTGGTTAGTCCATACGGTTTTCGGGGCCCGGATTGT
GTTCCTGCCGTCCGCCTTGGCAGCTATGTTGGCTGCTGCTCCTTTCCTAG
GCAGTTACTGGTGTGCGGTGCCAGCCTTTCTAGAGCTTTGGCTGGCCCAG
GACCGCTTCTATGCAGGACTTATATTGTTCCTGCTTCAGTTTTTCGTGCC
ATCATCTTTTGAAACTGCTATATATGCGGACCTCAAAGGTGGACATCCCT
ACCTCAACGGCCTGGCCATAGCAGGCGGAATGTATTGGATCGGTTGGCAA
GGAGCTATTTTCGGACCCCTTATGCTTTGCTTCTTCATCGGCCTTTTTGA
GGTGGCCACGCTGGCCATGCGCAGTCATCAAGAGCCCAGGAACAGTACGG
ACGAGGAGCGGACCACGGCAAGCTTTCTAGACCAT
BO14067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2698-RA | 2454 | CG2698-PA | 1..2451 | 17..2467 | 12255 | 100 | Plus |
CG2698-RD | 2610 | CG2698-PD | 1..2450 | 17..2466 | 12250 | 100 | Plus |
CG2698-RE | 2466 | CG2698-PE | 1..2463 | 17..2467 | 12100 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2698-RA | 3150 | CG2698-RA | 262..2712 | 17..2467 | 12255 | 100 | Plus |
CG2698-RD | 2988 | CG2698-RD | 262..2711 | 17..2466 | 12250 | 100 | Plus |
CG2698-RE | 3162 | CG2698-RE | 262..2724 | 17..2467 | 12100 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8002553..8003159 | 541..1147 | 3035 | 100 | Plus |
3R | 32079331 | 3R | 8003220..8003760 | 1148..1688 | 2705 | 100 | Plus |
3R | 32079331 | 3R | 8001922..8002458 | 17..553 | 2640 | 99.4 | Plus |
3R | 32079331 | 3R | 8004237..8004647 | 1879..2289 | 2055 | 100 | Plus |
3R | 32079331 | 3R | 8003986..8004178 | 1687..1879 | 965 | 100 | Plus |
3R | 32079331 | 3R | 8004713..8004864 | 2289..2440 | 760 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 3311..3385 | 1194..1269 | 134 | 65.8 | Plus |
BO14067.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:31 Download gff for
BO14067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-RA | 240..2696 | 17..2475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:23 Download gff for
BO14067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-RA | 262..2712 | 17..2469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:35 Download gff for
BO14067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-RA | 240..2690 | 17..2469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:29 Download gff for
BO14067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2698-RA | 262..2712 | 17..2469 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:29 Download gff for
BO14067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8001922..8002446 | 17..541 | 100 | -> | Plus |
3R | 8002554..8003159 | 542..1147 | 100 | -> | Plus |
3R | 8003220..8003760 | 1148..1688 | 100 | -> | Plus |
3R | 8003988..8004178 | 1689..1879 | 100 | -> | Plus |
3R | 8004238..8004647 | 1880..2289 | 100 | -> | Plus |
3R | 8004714..8004863 | 2290..2439 | 100 | -> | Plus |
3R | 8005254..8005281 | 2440..2469 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:23 Download gff for
BO14067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3827644..3828168 | 17..541 | 100 | -> | Plus |
arm_3R | 3828276..3828881 | 542..1147 | 100 | -> | Plus |
arm_3R | 3828942..3829482 | 1148..1688 | 100 | -> | Plus |
arm_3R | 3829710..3829900 | 1689..1879 | 100 | -> | Plus |
arm_3R | 3829960..3830369 | 1880..2289 | 100 | -> | Plus |
arm_3R | 3830436..3830585 | 2290..2439 | 100 | -> | Plus |
arm_3R | 3830976..3831003 | 2440..2469 | 93 | | Plus |
BO14067.pep Sequence
Translation from 16 to 2485
> BO14067.pep
MNRSEPIPIRRDRSFDSVINRLLRMRSQNHESFRAAMYNFLIAAGVAAFV
AVCFILGPFVRPLLWAFLMGAVLFPFKRRLAESVNSWFHRLEVRDSNVLV
SICLSPLEATEHCGRLLIGWLCEHWQLLLAGCGVAGCIKLLVLYAPKGFL
LAIWHWITFSHGLFVQIIGFLNVYVLISLIVVYLSCVHFFWRPENSAHFV
VAGQSMWIAVAGYLSSFLGALQVPVFLLVMTYVTASTAYHLQTLDDSGSY
LHRLQKLFDKNDFERSLSNFSICGRPGNEPLSPGLQSDVEDVSLSDTVDS
TDTFDVKPETEVPSHQSDTFFKLLFYACLGTFLYRNVWMFILAAIPVILH
LIYTVGEYTGITKFVCNKISEVYAALRFWAIEHHSAVLPLCLPGVLELNY
KINTIVRDSLKASVESVTSILMIILMLLIIVFLSVFFCVNIYSETIEVAY
LGKDLINKTITDRPELIDILPANMQSSIEDALDNAHHYGRRKIETYIDDW
LADADKVHATKLKEQILEVWDRLIQYWIDFNKAGSSYGPRVPTDALKSTF
GEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNMSMIMGVT
GEILSLVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGY
SSSGIKIADALENSITVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSA
LAAMLAAAPFLGSYWCAVPAFLELWLAQDRFYAGLILFLLQFFVPSSFET
AIYADLKGGHPYLNGLAIAGGMYWIGWQGAIFGPLMLCFFIGLFEVATLA
MRSHQEPRNSTDEERTTASFLDH
BO14067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2698-PD | 869 | CG2698-PD | 1..818 | 1..818 | 4251 | 99.9 | Plus |
CG2698-PA | 817 | CG2698-PA | 1..817 | 1..817 | 4250 | 100 | Plus |
CG2698-PE | 821 | CG2698-PE | 1..821 | 1..817 | 4235 | 99.5 | Plus |
CG2698-PH | 865 | CG2698-PH | 1..814 | 1..818 | 4219 | 99.4 | Plus |
CG2698-PG | 813 | CG2698-PG | 1..813 | 1..817 | 4218 | 99.5 | Plus |