Clone Sequence Records
BO14068.3prime Sequence
688 bp (602 high quality bases) assembled on 2006-05-29
> BO14068.3prime
ATGGTCTAGAAAGCTTGCTTCATCCAAGAATCCAGATAGCTCGAATTCTT
TAATAGTTCGCTGAAGGAAAGCCCGATACTTGGGGTTTTCAACATTTTCC
CGGCGGAAACGATCACCGCTCTCAGTGCGTGAGTTCAGATCCTCAAGGTT
TTCGAAACCAGCTCCCTCCCTGAAGATCAGTGGAGTCAGGCAAGTGGCGC
CAATGACACCCATAAGACTGGTCTTGATCAACTCGATGTGGATTTCTTTA
AGAGTTGGAATGTGTCCCTGGTAGTTTAGCTTCTCCAGGGTCTGCTGAAG
CACTCTCTGGTATTCCCTCACAATGTACTTATAGTGGACCTTACGAACAT
TCTCGTTCAAGGATCCGTACAGGAAGTAATTGAGATCAATGGTTGGGGAT
CCCACATAGGCCAACTGAAAGTCCAATGTGACCACATCGTCTGGCTCCTT
GGTCTCGTTGTTGATGTGGAACAAGAGATTGTTGATCCACAGATCGGTGA
GGTTGAAGACCCGGAAATCCTTGCCTGTGCTCTCAAACATGGTCAGCGCT
CTTTGCAGGACATTCTCGGCCAGGTTGAACATCTTTCTCGGTGATCTCCT
CGTAGCCCTTCCAGTGAGCCACTTCCCTCGGCCACGCAGCGAATGTTGAC
GGGGAAAAAGGTGAGGAAAGTCACGACGGTCCGGATTC
BO14068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-PA | 1254 | CG31098-RA | 685..1251 | 585..19 | 2810 | 99.8 | Minus |
CG31098-PA | 1254 | CG31098-RA | 645..686 | 626..585 | 210 | 100 | Minus |
CG31098-PA | 1254 | CG31098-RA | 604..646 | 668..626 | 190 | 97.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-RA | 1487 | CG31098-RA | 692..1358 | 688..19 | 3245 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 19:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25292028..25292286 | 427..688 | 1145 | 98.5 | Plus |
3R | 32079331 | 3R | 25291746..25291964 | 208..426 | 1080 | 99.5 | Plus |
3R | 32079331 | 3R | 25291499..25291695 | 19..215 | 970 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-01-30 19:16:59 has no hits.
BO14068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:14 Download gff for
BO14068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-PA | 585..1254 | 18..688 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:18 Download gff for
BO14068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-PA | 585..1254 | 18..688 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:07:43 Download gff for
BO14068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 692..1358 | 19..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:19:36 Download gff for
BO14068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 692..1358 | 19..688 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:19:36 Download gff for
BO14068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25291499..25291689 | 19..209 | 100 | <- | Plus |
3R | 25291748..25291964 | 210..426 | 99 | <- | Plus |
3R | 25292028..25292286 | 427..688 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:07:43 Download gff for
BO14068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21117221..21117411 | 19..209 | 100 | <- | Plus |
arm_3R | 21117470..21117686 | 210..426 | 99 | <- | Plus |
arm_3R | 21117750..21118008 | 427..688 | 98 | | Plus |
BO14068.5prime Sequence
661 bp (618 high quality bases) assembled on 2006-05-29
> BO14068.5prime
GAAGTTATCAGTCGACATGGGAACCGGCAGCAAGAACTACCAGGCTCCGG
AATGGCTCACCGCCGAATTCCTGCAGGATGTGCTGAAGGAACACTTCAAG
GAAGAGCAGCTGGCAGTCACCGAGTTGATAGTAAAGAGCGCCCAAGTGGG
CGACCAGGCGGCGGGATTTGCCAGCGAAATGCATCGGGCCAGTTTCAATC
TTCAGAGGGGCACTGCACCCAAAGGCAAGTTTTCAGTGATTGTGAAGGAT
CATCCCAAGGGACAAACAGGTGCTGTGGCCCACAGGAGTAAGCTCTTCAA
GCGTGAGATTCTGGCTTACAAGGAGGTGCTTCCACGTATTCAAGCCTTGC
TCCAATCCATTGGAGATCAAACGAAAATTGCACCTACGTGCTACTACACC
ACGGAATCGCCGGAGCCATTCCTGATTCTGGAGGACATGCAGCTGTCCGG
CTTCGAGAACTTCGAACGCGGTCGACTGCTGAATCTGGACTACGTACTGC
CCACCATCGAGAAGGTCGCCAAGCTGCACGCTTGCAGCGCCCTTATCGCC
CAGGATAGCCCCGAGGTGCTGGAGTTCTTCGACGAGGCGCCCATTTCGAG
GAATCCGGACCGTCGTGACTTCCTCACCTTCTTCCCCGTCAACATTCGCT
GCGTGGCCGAG
BO14068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-PA | 1254 | CG31098-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-RA | 1487 | CG31098-RA | 108..752 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25292226..25292870 | 661..17 | 3225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:08:33 has no hits.
BO14068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:15 Download gff for
BO14068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-PA | 1..645 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:19 Download gff for
BO14068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-PA | 1..645 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:25:48 Download gff for
BO14068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 108..752 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:52:14 Download gff for
BO14068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 108..752 | 17..661 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:52:14 Download gff for
BO14068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25292226..25292870 | 17..661 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:25:48 Download gff for
BO14068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21117948..21118592 | 17..661 | 100 | | Minus |
BO14068.complete Sequence
1285 bp assembled on 2008-11-10
GenBank Submission: KX797505
> BO14068.complete
GAAGTTATCAGTCGACATGGGAACCGGCAGCAAGAACTACCAGGCTCCGG
AATGGCTCACCGCCGAATTCCTGCAGGATGTGCTGAAGGAACACTTCAAG
GAAGAGCAGCTGGCAGTCACCGAGTTGATAGTAAAGAGCGCCCAAGTGGG
CGACCAGGCGGCGGGATTTGCCAGCGAAATGCATCGGGCCAGTTTCAATC
TTCAGAGGGGCACTGCACCCAAAGGCAAGTTTTCAGTGATTGTGAAGGAT
CATCCCAAGGGACAAACAGGTGCTGTGGCCCACAGGAGTAAGCTCTTCAA
GCGTGAGATTCTGGCTTACAAGGAGGTGCTTCCACGTATTCAAGCCTTGC
TCCAATCCATTGGAGATCAAACGAAAATTGCACCTACGTGCTACTACACC
ACGGAATCGCCGGAGCCATTCCTGATTCTGGAGGACATGCAGCTGTCCGG
CTTCGAGAACTTCGAACGCGGTCGACTGCTGAATCTGGACTACGTACTGC
CCACCATCGAGAAGGTCGCCAAGCTGCACGCTTGCAGCGCCCTTATCGCC
CAGGATAGCCCCGAGGTGCTGGAGTTCTTCGACGAGGCGCCCATTTCGAG
GAATCCGGACCGTCGTGACTTCCTCACCTTCTTCCCCGTCAACATTCGCT
GCGTGGCCGAGGAAGTGGCTCACTGGAAGGGCTACGAGGAGATCACCGAG
AAGATGTTCAACCTGGCCGAGAATGTCCTGCAAAGAGCGCTGACCATGTT
TGAGAGCACAGGCAAGGATTTCCGGGTCTTCAACCTCACCGATCTGTGGA
TCAACAATCTCTTGTTCCACATCAACAACGAGACCAAGGAGCCAGACGAT
GTGGTCACATTGGACTTTCAGTTGGCCTATGTGGGATCCCCAACCATTGA
TCTCAATTACTTCCTCTACGGATCCTTGAACGAGAATGTTCGTAAGGTCC
ACTATAAGTACATTGTGAGGGAATACCAGAGAGTGCTTCAGCAGACCCTG
GAGAAGCTAAACTACCAGGGACACATTCCAACTCTTAAAGAAATCCACAT
CGAGTTGATCAAGACCAGTCTTATGGGTGTCATTGGCGCCACTTGCCTGA
CTCCACTGATCTTCAGGGAGGGAGCTGGTTTCGAAAACCTTGAGGATCTG
AACTCACGCACTGAGAGCGGTGATCGTTTCCGCCGGGAAAATGTTGAAAA
CCCCAAGTATCGGGCTTTCCTTCAGCGAACTATTAAAGAATTCGAGCTAT
CTGGATTCTTGGATGAAGCAAGCTTTCTAGACCAT
BO14068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-RA | 1254 | CG31098-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-RA | 1487 | CG31098-RA | 108..1358 | 17..1267 | 6255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25292028..25292870 | 859..17 | 4215 | 100 | Minus |
3R | 32079331 | 3R | 25291746..25291964 | 1078..860 | 1095 | 100 | Minus |
3R | 32079331 | 3R | 25291499..25291695 | 1267..1071 | 970 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:35:18 has no hits.
BO14068.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:15:54 Download gff for
BO14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 102..1352 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:16 Download gff for
BO14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 108..1358 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:08 Download gff for
BO14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 102..1352 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:59 Download gff for
BO14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31098-RA | 108..1358 | 17..1269 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:59 Download gff for
BO14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25291748..25291964 | 860..1076 | 100 | <- | Minus |
3R | 25291497..25291689 | 1077..1269 | 98 | <- | Minus |
3R | 25292028..25292870 | 17..859 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:16 Download gff for
BO14068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21117219..21117411 | 1077..1269 | 98 | <- | Minus |
arm_3R | 21117470..21117686 | 860..1076 | 100 | <- | Minus |
arm_3R | 21117750..21118592 | 17..859 | 100 | | Minus |
BO14068.pep Sequence
Translation from 16 to 1285
> BO14068.pep
MGTGSKNYQAPEWLTAEFLQDVLKEHFKEEQLAVTELIVKSAQVGDQAAG
FASEMHRASFNLQRGTAPKGKFSVIVKDHPKGQTGAVAHRSKLFKREILA
YKEVLPRIQALLQSIGDQTKIAPTCYYTTESPEPFLILEDMQLSGFENFE
RGRLLNLDYVLPTIEKVAKLHACSALIAQDSPEVLEFFDEAPISRNPDRR
DFLTFFPVNIRCVAEEVAHWKGYEEITEKMFNLAENVLQRALTMFESTGK
DFRVFNLTDLWINNLLFHINNETKEPDDVVTLDFQLAYVGSPTIDLNYFL
YGSLNENVRKVHYKYIVREYQRVLQQTLEKLNYQGHIPTLKEIHIELIKT
SLMGVIGATCLTPLIFREGAGFENLEDLNSRTESGDRFRRENVENPKYRA
FLQRTIKEFELSGFLDEASFLDH
BO14068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31098-PA | 417 | CG31098-PA | 1..417 | 1..417 | 2159 | 100 | Plus |
CG11892-PA | 439 | CG11892-PA | 33..436 | 10..416 | 442 | 30.2 | Plus |
CG11892-PB | 439 | CG11892-PB | 33..436 | 10..416 | 442 | 30.2 | Plus |
CG10514-PA | 413 | CG10514-PA | 4..408 | 10..416 | 426 | 28 | Plus |
CG13360-PA | 421 | CG13360-PA | 12..421 | 8..416 | 389 | 24.3 | Plus |