Clone BO14071 Report

Search the DGRC for BO14071

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG5174-RH
Protein status:BO14071.pep: validated full length
Sequenced Size:598

Clone Sequence Records

BO14071.3prime Sequence

600 bp (559 high quality bases) assembled on 2006-05-29

> BO14071.3prime
ATGGTCTAGAAAGCTTGCTTTCGGGAGTGAGTCTGTGGGTGAATTCAGAC
CCGAGGATGTGTTATTCTCGTCCAGGGCATCTGGGAAACTGGACACCGAA
CCCGAGCGGGATGTCACCTTGGTTTTAACGTTCTCGTAGGCAGAGCCCAC
CGAAGCCTCGATAGAACGCATCGATTCGGAGTTTTTCATTTGCGACAGTT
TCGACGAAATGCCACTGGTGATGCTGCCAAACACCGAGGCGGTCTTCTCG
CCCGTGGACTTTAGCACCGACTCAGTGCGTTGGTATACAGTGCTCTCCTT
GAGGTTCTTAAGGCCCTGGTTCACGTCGTCCGTCACCTCCTTCCAGACGG
TGATGCCCAGCTTGCGCTTGAGATCGGAGGCATGGCGCGTCTTGGAGGCT
AGGACAGTTCGCAGCGTATTGATCTCTTCCTCAACGCGGGCGAGCTCCTG
ACTCCCACTCAGCCCGACGCTGCTCCTTCTCCTCGACGGAAAGCGCAGCG
AACTCGGCGGCAATTTCTGCGGATGCCACAAAATTAGCTGGAGATGCTGG
CTCCGACAGGTTGGCTGTATTATGGTCCCTCCATTGTCGACTGATAACTT

BO14071.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5174-PH 567 CG5174-RH 128..564 455..19 2185 100 Minus
CG5174-PI 606 CG5174-RI 167..603 455..19 2185 100 Minus
CG5174-PG 501 CG5174-RG 128..459 455..124 1660 100 Minus
CG5174-PA 627 CG5174-RA 356..624 287..19 1345 100 Minus
CG5174-PB 1068 CG5174-RB 797..1065 287..19 1345 100 Minus
CG5174-PA 627 CG5174-RA 128..303 455..280 855 99.4 Minus
CG5174-PB 1068 CG5174-RB 569..744 455..280 855 99.4 Minus
CG5174-PJ 561 CG5174-RJ 128..303 455..280 855 99.4 Minus
CG5174-PK 300 CG5174-RK 128..296 455..287 845 100 Minus
CG5174-PJ 561 CG5174-RJ 356..519 287..124 820 100 Minus
CG5174-PA 627 CG5174-RA 6..129 578..455 595 99.1 Minus
CG5174-PH 567 CG5174-RH 6..129 578..455 595 99.1 Minus
CG5174-PJ 561 CG5174-RJ 6..129 578..455 595 99.1 Minus
CG5174-PG 501 CG5174-RG 6..129 578..455 595 99.1 Minus
CG5174-PK 300 CG5174-RK 6..129 578..455 595 99.1 Minus
CG5174-PB 1068 CG5174-RB 452..570 573..455 570 99.1 Minus
CG5174-PI 606 CG5174-RI 50..168 573..455 570 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5174-RH 1472 CG5174-RH 131..695 585..19 2770 99.5 Minus
CG5174-RM 1514 CG5174-RM 184..737 573..19 2735 99.6 Minus
CG5174-RG 848 CG5174-RG 131..590 585..124 2245 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18424323..18424486 450..287 820 100 Minus
2R 25286936 2R 18424872..18425034 286..124 815 100 Minus
2R 25286936 2R 18424127..18424245 573..455 580 99.2 Minus
2R 25286936 2R 18425340..18425444 123..19 525 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:09:45 has no hits.

BO14071.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:21 Download gff for BO14071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5174-PI 46..606 18..578 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:26 Download gff for BO14071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5174-PI 46..606 18..578 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:11:37 Download gff for BO14071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5174-RH 128..703 9..589 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:43 Download gff for BO14071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5174-RH 128..703 9..589 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:43 Download gff for BO14071.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18424127..18424251 448..573 98 -> Minus
2R 18424326..18424486 287..447 100 -> Minus
2R 18424872..18425034 124..286 100 -> Minus
2R 18425340..18425452 9..123 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:11:37 Download gff for BO14071.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14312377..14312539 124..286 100 -> Minus
arm_2R 14312845..14312957 9..123 96   Minus
arm_2R 14311632..14311756 448..573 98 -> Minus
arm_2R 14311831..14311991 287..447 100 -> Minus

BO14071.5prime Sequence

596 bp (595 high quality bases) assembled on 2006-05-29

> BO14071.5prime
GAAGTTATCAGTCGACATGGAGGACCATAATACAGCCAACCTGTCGGAGC
CAGCATCTCCAGCTAATTCTGTGGCATCCGCAGAAATTGCCGCCGAGTTC
GCTGCGCTTTCCGTCGAGGAGAAGGAGCAGCGTCGGGCTGAGTGGAGTCA
GGAGCTCGCCCGCGTTGAGGAAGAGATCAATACGCTGCGAACTGTCCTAG
CCTCCAAGACGCGCCATGCCTCCGATCTCAAGCGCAAGCTGGGCATCACC
GTCTGGAAGGAGGTGACGGACGACGTGAACCAGGGCCTTAAGAACCTCAA
GGAGAGCACTGTATACCAACGCACTGAGTCGGTGCTAAAGTCCACGGGCG
AGAAGACCGCCTCGGTGTTTGGCAGCATCACCAGTGGCATTTCGTCGAAA
CTGTCGCAAATGAAAAACTCCGAATCGATGCGTTCTATCGAGGCTTCGGT
GGGCTCTGCCTACGAGAACGTTAAAACCAAGGTGACATCCCGCTCGGGTT
CGGTGTCCAGTTTCCCAGATGCCCTGGACGAGAATAACACATCCTCGGGT
CTGAATTCACCCACAGACTCACTCCCGAAAGCAAGCTTTCTAGACC

BO14071.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5174-PH 567 CG5174-RH 1..564 17..580 2820 100 Plus
CG5174-PI 606 CG5174-RI 50..603 27..580 2770 100 Plus
CG5174-PG 501 CG5174-RG 1..459 17..475 2295 100 Plus
CG5174-PA 627 CG5174-RA 1..303 17..319 1490 99.6 Plus
CG5174-PJ 561 CG5174-RJ 1..303 17..319 1490 99.6 Plus
CG5174-PK 300 CG5174-RK 1..296 17..312 1480 100 Plus
CG5174-PB 1068 CG5174-RB 452..744 27..319 1440 99.6 Plus
CG5174-PA 627 CG5174-RA 356..624 312..580 1345 100 Plus
CG5174-PB 1068 CG5174-RB 797..1065 312..580 1345 100 Plus
CG5174-PJ 561 CG5174-RJ 356..519 312..475 820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5174-RH 1472 CG5174-RH 132..695 17..580 2820 100 Plus
CG5174-RM 1514 CG5174-RM 184..737 27..580 2770 100 Plus
CG5174-RG 848 CG5174-RG 132..590 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18424323..18424486 149..312 820 100 Plus
2R 25286936 2R 18424872..18425034 313..475 815 100 Plus
2R 25286936 2R 18424127..18424252 27..152 630 100 Plus
2R 25286936 2R 18425340..18425444 476..580 525 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:41:11 has no hits.

BO14071.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:22 Download gff for BO14071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5174-PH 1..567 17..581 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:27 Download gff for BO14071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5174-PH 1..567 17..581 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:48:24 Download gff for BO14071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5174-RH 132..703 17..590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:26 Download gff for BO14071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5174-RH 132..703 17..590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:26 Download gff for BO14071.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18424326..18424486 152..312 100 -> Plus
2R 18424872..18425034 313..475 100 -> Plus
2R 18425340..18425452 476..590 96   Plus
2R 18424127..18424251 27..151 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:48:24 Download gff for BO14071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14312845..14312957 476..590 96   Plus
arm_2R 14311831..14311991 152..312 100 -> Plus
arm_2R 14312377..14312539 313..475 100 -> Plus
arm_2R 14311632..14311756 27..151 100 -> Plus

BO14071.complete Sequence

598 bp assembled on 2006-10-11

GenBank Submission: FJ633016

> BO14071.complete
GAAGTTATCAGTCGACATGGAGGACCATAATACAGCCAACCTGTCGGAGC
CAGCATCTCCAGCTAATTCTGTGGCATCCGCAGAAATTGCCGCCGAGTTC
GCTGCGCTTTCCGTCGAGGAGAAGGAGCAGCGTCGGGCTGAGTGGAGTCA
GGAGCTCGCCCGCGTTGAGGAAGAGATCAATACGCTGCGAACTGTCCTAG
CCTCCAAGACGCGCCATGCCTCCGATCTCAAGCGCAAGCTGGGCATCACC
GTCTGGAAGGAGGTGACGGACGACGTGAACCAGGGCCTTAAGAACCTCAA
GGAGAGCACTGTATACCAACGCACTGAGTCGGTGCTAAAGTCCACGGGCG
AGAAGACCGCCTCGGTGTTTGGCAGCATCACCAGTGGCATTTCGTCGAAA
CTGTCGCAAATGAAAAACTCCGAATCGATGCGTTCTATCGAGGCTTCGGT
GGGCTCTGCCTACGAGAACGTTAAAACCAAGGTGACATCCCGCTCGGGTT
CGGTGTCCAGTTTCCCAGATGCCCTGGACGAGAATAACACATCCTCGGGT
CTGAATTCACCCACAGACTCACTCCCGAAAGCAAGCTTTCTAGACCAT

BO14071.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5174-RH 567 CG5174-PH 1..564 17..580 2820 100 Plus
CG5174-RM 609 CG5174-PM 53..606 27..580 2770 100 Plus
CG5174-RG 501 CG5174-PG 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5174-RH 1472 CG5174-RH 132..695 17..580 2820 100 Plus
CG5174-RM 1514 CG5174-RM 184..737 27..580 2770 100 Plus
CG5174-RG 848 CG5174-RG 132..590 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18424323..18424486 149..312 820 100 Plus
2R 25286936 2R 18424872..18425034 313..475 815 100 Plus
2R 25286936 2R 18424127..18424252 27..152 630 100 Plus
2R 25286936 2R 18425340..18425444 476..580 525 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:43:08 has no hits.

BO14071.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:38 Download gff for BO14071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5174-RH 1..567 17..581 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:33 Download gff for BO14071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5174-RH 135..706 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:19 Download gff for BO14071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5174-RH 132..695 17..582 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:39 Download gff for BO14071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5174-RH 135..706 17..590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:54 Download gff for BO14071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5174-RH 132..695 17..582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:54 Download gff for BO14071.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18424127..18424251 27..151 100 -> Plus
2R 18424326..18424486 152..312 100 -> Plus
2R 18424872..18425034 313..475 100 -> Plus
2R 18425340..18425444 476..582 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:19 Download gff for BO14071.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14311632..14311756 27..151 100 -> Plus
arm_2R 14311831..14311991 152..312 100 -> Plus
arm_2R 14312377..14312539 313..475 100 -> Plus
arm_2R 14312845..14312949 476..582 98   Plus

BO14071.pep Sequence

Translation from 16 to 598

> BO14071.pep
MEDHNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARV
EEEINTLRTVLASKTRHASDLKRKLGITVWKEVTDDVNQGLKNLKESTVY
QRTESVLKSTGEKTASVFGSITSGISSKLSQMKNSESMRSIEASVGSAYE
NVKTKVTSRSGSVSSFPDALDENNTSSGLNSPTDSLPKASFLDH

BO14071.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5174-PH 188 CG5174-PH 1..188 1..188 919 100 Plus
CG5174-PM 202 CG5174-PM 19..202 5..188 895 100 Plus
CG5174-PA 208 CG5174-PA 1..208 1..188 888 90.4 Plus
CG5174-PL 209 CG5174-PL 1..209 1..188 870 89.5 Plus
CG5174-PN 222 CG5174-PN 1..222 1..188 863 84.7 Plus