Clone Sequence Records
BO14071.3prime Sequence
600 bp (559 high quality bases) assembled on 2006-05-29
> BO14071.3prime
ATGGTCTAGAAAGCTTGCTTTCGGGAGTGAGTCTGTGGGTGAATTCAGAC
CCGAGGATGTGTTATTCTCGTCCAGGGCATCTGGGAAACTGGACACCGAA
CCCGAGCGGGATGTCACCTTGGTTTTAACGTTCTCGTAGGCAGAGCCCAC
CGAAGCCTCGATAGAACGCATCGATTCGGAGTTTTTCATTTGCGACAGTT
TCGACGAAATGCCACTGGTGATGCTGCCAAACACCGAGGCGGTCTTCTCG
CCCGTGGACTTTAGCACCGACTCAGTGCGTTGGTATACAGTGCTCTCCTT
GAGGTTCTTAAGGCCCTGGTTCACGTCGTCCGTCACCTCCTTCCAGACGG
TGATGCCCAGCTTGCGCTTGAGATCGGAGGCATGGCGCGTCTTGGAGGCT
AGGACAGTTCGCAGCGTATTGATCTCTTCCTCAACGCGGGCGAGCTCCTG
ACTCCCACTCAGCCCGACGCTGCTCCTTCTCCTCGACGGAAAGCGCAGCG
AACTCGGCGGCAATTTCTGCGGATGCCACAAAATTAGCTGGAGATGCTGG
CTCCGACAGGTTGGCTGTATTATGGTCCCTCCATTGTCGACTGATAACTT
BO14071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5174-PH | 567 | CG5174-RH | 128..564 | 455..19 | 2185 | 100 | Minus |
CG5174-PI | 606 | CG5174-RI | 167..603 | 455..19 | 2185 | 100 | Minus |
CG5174-PG | 501 | CG5174-RG | 128..459 | 455..124 | 1660 | 100 | Minus |
CG5174-PA | 627 | CG5174-RA | 356..624 | 287..19 | 1345 | 100 | Minus |
CG5174-PB | 1068 | CG5174-RB | 797..1065 | 287..19 | 1345 | 100 | Minus |
CG5174-PA | 627 | CG5174-RA | 128..303 | 455..280 | 855 | 99.4 | Minus |
CG5174-PB | 1068 | CG5174-RB | 569..744 | 455..280 | 855 | 99.4 | Minus |
CG5174-PJ | 561 | CG5174-RJ | 128..303 | 455..280 | 855 | 99.4 | Minus |
CG5174-PK | 300 | CG5174-RK | 128..296 | 455..287 | 845 | 100 | Minus |
CG5174-PJ | 561 | CG5174-RJ | 356..519 | 287..124 | 820 | 100 | Minus |
CG5174-PA | 627 | CG5174-RA | 6..129 | 578..455 | 595 | 99.1 | Minus |
CG5174-PH | 567 | CG5174-RH | 6..129 | 578..455 | 595 | 99.1 | Minus |
CG5174-PJ | 561 | CG5174-RJ | 6..129 | 578..455 | 595 | 99.1 | Minus |
CG5174-PG | 501 | CG5174-RG | 6..129 | 578..455 | 595 | 99.1 | Minus |
CG5174-PK | 300 | CG5174-RK | 6..129 | 578..455 | 595 | 99.1 | Minus |
CG5174-PB | 1068 | CG5174-RB | 452..570 | 573..455 | 570 | 99.1 | Minus |
CG5174-PI | 606 | CG5174-RI | 50..168 | 573..455 | 570 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5174-RH | 1472 | CG5174-RH | 131..695 | 585..19 | 2770 | 99.5 | Minus |
CG5174-RM | 1514 | CG5174-RM | 184..737 | 573..19 | 2735 | 99.6 | Minus |
CG5174-RG | 848 | CG5174-RG | 131..590 | 585..124 | 2245 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18424323..18424486 | 450..287 | 820 | 100 | Minus |
2R | 25286936 | 2R | 18424872..18425034 | 286..124 | 815 | 100 | Minus |
2R | 25286936 | 2R | 18424127..18424245 | 573..455 | 580 | 99.2 | Minus |
2R | 25286936 | 2R | 18425340..18425444 | 123..19 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:09:45 has no hits.
BO14071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:21 Download gff for
BO14071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-PI | 46..606 | 18..578 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:26 Download gff for
BO14071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-PI | 46..606 | 18..578 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:11:37 Download gff for
BO14071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-RH | 128..703 | 9..589 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:43 Download gff for
BO14071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-RH | 128..703 | 9..589 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:43 Download gff for
BO14071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18424127..18424251 | 448..573 | 98 | -> | Minus |
2R | 18424326..18424486 | 287..447 | 100 | -> | Minus |
2R | 18424872..18425034 | 124..286 | 100 | -> | Minus |
2R | 18425340..18425452 | 9..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:11:37 Download gff for
BO14071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14312377..14312539 | 124..286 | 100 | -> | Minus |
arm_2R | 14312845..14312957 | 9..123 | 96 | | Minus |
arm_2R | 14311632..14311756 | 448..573 | 98 | -> | Minus |
arm_2R | 14311831..14311991 | 287..447 | 100 | -> | Minus |
BO14071.5prime Sequence
596 bp (595 high quality bases) assembled on 2006-05-29
> BO14071.5prime
GAAGTTATCAGTCGACATGGAGGACCATAATACAGCCAACCTGTCGGAGC
CAGCATCTCCAGCTAATTCTGTGGCATCCGCAGAAATTGCCGCCGAGTTC
GCTGCGCTTTCCGTCGAGGAGAAGGAGCAGCGTCGGGCTGAGTGGAGTCA
GGAGCTCGCCCGCGTTGAGGAAGAGATCAATACGCTGCGAACTGTCCTAG
CCTCCAAGACGCGCCATGCCTCCGATCTCAAGCGCAAGCTGGGCATCACC
GTCTGGAAGGAGGTGACGGACGACGTGAACCAGGGCCTTAAGAACCTCAA
GGAGAGCACTGTATACCAACGCACTGAGTCGGTGCTAAAGTCCACGGGCG
AGAAGACCGCCTCGGTGTTTGGCAGCATCACCAGTGGCATTTCGTCGAAA
CTGTCGCAAATGAAAAACTCCGAATCGATGCGTTCTATCGAGGCTTCGGT
GGGCTCTGCCTACGAGAACGTTAAAACCAAGGTGACATCCCGCTCGGGTT
CGGTGTCCAGTTTCCCAGATGCCCTGGACGAGAATAACACATCCTCGGGT
CTGAATTCACCCACAGACTCACTCCCGAAAGCAAGCTTTCTAGACC
BO14071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5174-PH | 567 | CG5174-RH | 1..564 | 17..580 | 2820 | 100 | Plus |
CG5174-PI | 606 | CG5174-RI | 50..603 | 27..580 | 2770 | 100 | Plus |
CG5174-PG | 501 | CG5174-RG | 1..459 | 17..475 | 2295 | 100 | Plus |
CG5174-PA | 627 | CG5174-RA | 1..303 | 17..319 | 1490 | 99.6 | Plus |
CG5174-PJ | 561 | CG5174-RJ | 1..303 | 17..319 | 1490 | 99.6 | Plus |
CG5174-PK | 300 | CG5174-RK | 1..296 | 17..312 | 1480 | 100 | Plus |
CG5174-PB | 1068 | CG5174-RB | 452..744 | 27..319 | 1440 | 99.6 | Plus |
CG5174-PA | 627 | CG5174-RA | 356..624 | 312..580 | 1345 | 100 | Plus |
CG5174-PB | 1068 | CG5174-RB | 797..1065 | 312..580 | 1345 | 100 | Plus |
CG5174-PJ | 561 | CG5174-RJ | 356..519 | 312..475 | 820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5174-RH | 1472 | CG5174-RH | 132..695 | 17..580 | 2820 | 100 | Plus |
CG5174-RM | 1514 | CG5174-RM | 184..737 | 27..580 | 2770 | 100 | Plus |
CG5174-RG | 848 | CG5174-RG | 132..590 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18424323..18424486 | 149..312 | 820 | 100 | Plus |
2R | 25286936 | 2R | 18424872..18425034 | 313..475 | 815 | 100 | Plus |
2R | 25286936 | 2R | 18424127..18424252 | 27..152 | 630 | 100 | Plus |
2R | 25286936 | 2R | 18425340..18425444 | 476..580 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:41:11 has no hits.
BO14071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:22 Download gff for
BO14071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-PH | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:27 Download gff for
BO14071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-PH | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:48:24 Download gff for
BO14071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-RH | 132..703 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:26 Download gff for
BO14071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-RH | 132..703 | 17..590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:26 Download gff for
BO14071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18424326..18424486 | 152..312 | 100 | -> | Plus |
2R | 18424872..18425034 | 313..475 | 100 | -> | Plus |
2R | 18425340..18425452 | 476..590 | 96 | | Plus |
2R | 18424127..18424251 | 27..151 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:48:24 Download gff for
BO14071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14312845..14312957 | 476..590 | 96 | | Plus |
arm_2R | 14311831..14311991 | 152..312 | 100 | -> | Plus |
arm_2R | 14312377..14312539 | 313..475 | 100 | -> | Plus |
arm_2R | 14311632..14311756 | 27..151 | 100 | -> | Plus |
BO14071.complete Sequence
598 bp assembled on 2006-10-11
GenBank Submission: FJ633016
> BO14071.complete
GAAGTTATCAGTCGACATGGAGGACCATAATACAGCCAACCTGTCGGAGC
CAGCATCTCCAGCTAATTCTGTGGCATCCGCAGAAATTGCCGCCGAGTTC
GCTGCGCTTTCCGTCGAGGAGAAGGAGCAGCGTCGGGCTGAGTGGAGTCA
GGAGCTCGCCCGCGTTGAGGAAGAGATCAATACGCTGCGAACTGTCCTAG
CCTCCAAGACGCGCCATGCCTCCGATCTCAAGCGCAAGCTGGGCATCACC
GTCTGGAAGGAGGTGACGGACGACGTGAACCAGGGCCTTAAGAACCTCAA
GGAGAGCACTGTATACCAACGCACTGAGTCGGTGCTAAAGTCCACGGGCG
AGAAGACCGCCTCGGTGTTTGGCAGCATCACCAGTGGCATTTCGTCGAAA
CTGTCGCAAATGAAAAACTCCGAATCGATGCGTTCTATCGAGGCTTCGGT
GGGCTCTGCCTACGAGAACGTTAAAACCAAGGTGACATCCCGCTCGGGTT
CGGTGTCCAGTTTCCCAGATGCCCTGGACGAGAATAACACATCCTCGGGT
CTGAATTCACCCACAGACTCACTCCCGAAAGCAAGCTTTCTAGACCAT
BO14071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5174-RH | 567 | CG5174-PH | 1..564 | 17..580 | 2820 | 100 | Plus |
CG5174-RM | 609 | CG5174-PM | 53..606 | 27..580 | 2770 | 100 | Plus |
CG5174-RG | 501 | CG5174-PG | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5174-RH | 1472 | CG5174-RH | 132..695 | 17..580 | 2820 | 100 | Plus |
CG5174-RM | 1514 | CG5174-RM | 184..737 | 27..580 | 2770 | 100 | Plus |
CG5174-RG | 848 | CG5174-RG | 132..590 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18424323..18424486 | 149..312 | 820 | 100 | Plus |
2R | 25286936 | 2R | 18424872..18425034 | 313..475 | 815 | 100 | Plus |
2R | 25286936 | 2R | 18424127..18424252 | 27..152 | 630 | 100 | Plus |
2R | 25286936 | 2R | 18425340..18425444 | 476..580 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:43:08 has no hits.
BO14071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:38 Download gff for
BO14071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-RH | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:33 Download gff for
BO14071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-RH | 135..706 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:19 Download gff for
BO14071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-RH | 132..695 | 17..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:39 Download gff for
BO14071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-RH | 135..706 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:54 Download gff for
BO14071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5174-RH | 132..695 | 17..582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:54 Download gff for
BO14071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18424127..18424251 | 27..151 | 100 | -> | Plus |
2R | 18424326..18424486 | 152..312 | 100 | -> | Plus |
2R | 18424872..18425034 | 313..475 | 100 | -> | Plus |
2R | 18425340..18425444 | 476..582 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:19 Download gff for
BO14071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14311632..14311756 | 27..151 | 100 | -> | Plus |
arm_2R | 14311831..14311991 | 152..312 | 100 | -> | Plus |
arm_2R | 14312377..14312539 | 313..475 | 100 | -> | Plus |
arm_2R | 14312845..14312949 | 476..582 | 98 | | Plus |
BO14071.pep Sequence
Translation from 16 to 598
> BO14071.pep
MEDHNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARV
EEEINTLRTVLASKTRHASDLKRKLGITVWKEVTDDVNQGLKNLKESTVY
QRTESVLKSTGEKTASVFGSITSGISSKLSQMKNSESMRSIEASVGSAYE
NVKTKVTSRSGSVSSFPDALDENNTSSGLNSPTDSLPKASFLDH
BO14071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5174-PH | 188 | CG5174-PH | 1..188 | 1..188 | 919 | 100 | Plus |
CG5174-PM | 202 | CG5174-PM | 19..202 | 5..188 | 895 | 100 | Plus |
CG5174-PA | 208 | CG5174-PA | 1..208 | 1..188 | 888 | 90.4 | Plus |
CG5174-PL | 209 | CG5174-PL | 1..209 | 1..188 | 870 | 89.5 | Plus |
CG5174-PN | 222 | CG5174-PN | 1..222 | 1..188 | 863 | 84.7 | Plus |