Clone Sequence Records
BO14076.3prime Sequence
720 bp (642 high quality bases) assembled on 2006-05-29
> BO14076.3prime
ATGGTCTAGAAAGCTTGCGTACCATTTGGACTCCTCCTTGTCAGCGAGCA
GAGGTCTCCGCACCGCATCCCCACCATCGAGATGGTGGGGACCACGACTG
CCATTGTCGTCCTTTCCAGACAGTCGCTGGTACTGGCTTCCCTCTCTGCT
GGGCCACCTGACCAGTGGTATGCCGGCATCAGGGCAGAAGATGGAGGGAT
AGTATTGTGTGTAGCTTATATAGCCTGCAAACAGGCCAATCAGCCCGCCG
ATGGTCACATCCTGCCAGTGGTGGTGGTAGTCGCAGGTGCGACTAACTGC
AACCAGCAGTGCGATAAACAGAGGTATCACAGCGATGCAGAGCCGCCAGG
TGTGGCCGCGTCCCCGGCTATCAAAGGCGTGCAGCTTGGCGCCAATGTAA
TAGGCAATGAAACCGAAACTCGCAAAGGCGAACGACGAGTGTCCGCTGGG
GAAGCTCTTGCGGCCTTCGTTTATGTCGCCCGGAAGCCCTGTGCAATTGA
AATCCAGGATGGAGGTGTCCACGCCATTTGACGTTGTGTTAAGCACCATC
ACGCCATCGGGAAAGCAGCGGTAAAAATAGTCGGGCCTGGGCCGCCCCAC
TGTTATCTTTAGTACGCTCGTTGGGATGCCGTTCATGCACAGGGCCAGTG
TCCAGGCCCAGCTGGCGGCTCTAAAGTCCCGCCTGTCTCTTGTGTACCCA
TAGAAGGCGATAGTGGACCA
BO14076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PB | 1092 | CG12746-RB | 393..1089 | 715..19 | 3435 | 99.7 | Minus |
CG12746-PC | 1239 | CG12746-RC | 540..1236 | 715..19 | 3435 | 99.7 | Minus |
CG12746-PD | 1092 | CG12746-RD | 393..1089 | 715..19 | 3435 | 99.7 | Minus |
CG12746-PA | 903 | CG12746-RA | 572..900 | 347..19 | 1645 | 100 | Minus |
CG12746-PA | 903 | CG12746-RA | 540..576 | 715..679 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 735..1431 | 715..19 | 3455 | 99.7 | Minus |
CG12746-RD | 1381 | CG12746-RD | 607..1303 | 715..19 | 3455 | 99.7 | Minus |
CG12746-RB | 1339 | CG12746-RB | 565..1261 | 715..19 | 3455 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5566945..5567357 | 431..19 | 2065 | 100 | Minus |
3R | 32079331 | 3R | 5566602..5566885 | 715..432 | 1390 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:42:30 has no hits.
BO14076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:30 Download gff for
BO14076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PD | 390..1092 | 15..719 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:37 Download gff for
BO14076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PD | 390..1092 | 15..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:24:40 Download gff for
BO14076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 562..1271 | 10..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:40:23 Download gff for
BO14076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 562..1271 | 10..719 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:40:23 Download gff for
BO14076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5566599..5566885 | 432..719 | 98 | -> | Minus |
3R | 5566945..5567367 | 10..431 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:24:40 Download gff for
BO14076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1392321..1392607 | 432..719 | 98 | -> | Minus |
arm_3R | 1392667..1393089 | 10..431 | 99 | | Minus |
BO14076.5prime Sequence
748 bp (655 high quality bases) assembled on 2006-05-29
> BO14076.5prime
GAAGTTATCAGTCGACATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGC
GAACCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGG
ACCAGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACAC
GGACAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAA
CAGGAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGC
GTTCTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAA
ACGGGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGAC
CGGACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCC
TTTCTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGGACTT
TAGAGCCGCCAGCTGGGCCTGGACACTGGCCCTGTGCATGAACGGCATCC
CAACGAGCGTACTAAAGATAACAGTGGGGCGGCCCAGGCCCGACTATTTT
TACCGCTGCTTTCCCGATGGCGTGATGGTGCTTAACACAACGTCAAATGG
CGTGGACACCTCCATCCTGGATTTCAATTGCACAGGGCTTCCGGGCGACA
TAAACGAAGGCCGCAAGAGCTTCCCCAGCGGACACTCGTCGTTCGCCTTT
GCGAGTTTCGGTTTCTTTGCCTATTACATTGGCGCCAAGCTGCACGCC
BO14076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PB | 1092 | CG12746-RB | 1..732 | 17..748 | 3635 | 99.8 | Plus |
CG12746-PC | 1239 | CG12746-RC | 148..879 | 17..748 | 3635 | 99.8 | Plus |
CG12746-PD | 1092 | CG12746-RD | 1..732 | 17..748 | 3635 | 99.8 | Plus |
CG12746-PA | 903 | CG12746-RA | 148..576 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 339..1074 | 13..748 | 3650 | 99.7 | Plus |
CG12746-RD | 1381 | CG12746-RD | 211..946 | 13..748 | 3650 | 99.7 | Plus |
CG12746-RB | 1339 | CG12746-RB | 169..904 | 13..748 | 3650 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5566467..5566885 | 274..692 | 2095 | 100 | Plus |
3R | 32079331 | 3R | 5566138..5566398 | 13..273 | 1290 | 99.6 | Plus |
3R | 32079331 | 3R | 5566945..5567000 | 693..748 | 265 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:42:57 has no hits.
BO14076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:31 Download gff for
BO14076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PD | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:38 Download gff for
BO14076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-PD | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:46 Download gff for
BO14076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 169..904 | 13..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:18 Download gff for
BO14076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 169..904 | 13..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:18 Download gff for
BO14076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5566138..5566398 | 13..273 | 99 | -> | Plus |
3R | 5566467..5566885 | 274..692 | 100 | -> | Plus |
3R | 5566945..5567000 | 693..748 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:46 Download gff for
BO14076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1391860..1392120 | 13..273 | 99 | -> | Plus |
arm_3R | 1392189..1392607 | 274..692 | 100 | -> | Plus |
arm_3R | 1392667..1392722 | 693..748 | 98 | | Plus |
BO14076.complete Sequence
1123 bp assembled on 2006-10-11
GenBank Submission: FJ633017
> BO14076.complete
GAAGTTATCAGTCGACATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGC
GAACCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGG
ACCAGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACAC
GGACAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAA
CAGGAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGC
GTTCTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAA
ACGGGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGAC
CGGACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCC
TTTCTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGGACTT
TAGAGCCGCCAGCTGGGCCTGGACACTGGCCCTGTGCATGAACGGCATCC
CAACGAGCGTACTAAAGATAACAGTGGGGCGGCCCAGGCCCGACTATTTT
TACCGCTGCTTTCCCGATGGCGTGATGGTGCTTAACACAACGTCAAATGG
CGTGGACACCTCCATCCTGGATTTCAATTGCACAGGGCTTCCGGGCGACA
TAAACGAAGGCCGCAAGAGCTTCCCCAGCGGACACTCGTCGTTCGCCTTT
GCGAGTTTCGGTTTCATTGCCTATTACATTGGCGCCAAGCTGCACGCCTT
TGATAGCCGGGGACGCGGCCACACCTGGCGGCTCTGCATCGCTGTGATAC
CTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCTGCGACTACCAC
CACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGCCTGTTTGCAGG
CTATATAAGCTACACACAATACTATCCCTCCATCTTCTGCCCTGATGCCG
GCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCCAGTACCAGCGA
CTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCACCATCTCGATGG
TGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGAGGAGTCCAAAT
GGTACGCAAGCTTTCTAGACCAT
BO14076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1092 | CG12746-PE | 1..1089 | 17..1105 | 5445 | 100 | Plus |
CG12746-RD | 1092 | CG12746-PD | 1..1089 | 17..1105 | 5445 | 100 | Plus |
CG12746-RB | 1092 | CG12746-PB | 1..1089 | 17..1105 | 5445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 339..1431 | 13..1105 | 5450 | 99.9 | Plus |
CG12746-RD | 1381 | CG12746-RD | 211..1303 | 13..1105 | 5450 | 99.9 | Plus |
CG12746-RB | 1339 | CG12746-RB | 169..1261 | 13..1105 | 5450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5566467..5566885 | 274..692 | 2095 | 100 | Plus |
3R | 32079331 | 3R | 5566945..5567357 | 693..1105 | 2065 | 100 | Plus |
3R | 32079331 | 3R | 5566138..5566398 | 13..273 | 1290 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:32:02 has no hits.
BO14076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:40 Download gff for
BO14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 1..1092 | 17..1109 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:35 Download gff for
BO14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 339..1441 | 13..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:47 Download gff for
BO14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 173..1261 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:40 Download gff for
BO14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 339..1441 | 13..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:23 Download gff for
BO14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RB | 173..1261 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:23 Download gff for
BO14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5566142..5566398 | 17..273 | 100 | -> | Plus |
3R | 5566467..5566885 | 274..692 | 100 | -> | Plus |
3R | 5566945..5567357 | 693..1107 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:47 Download gff for
BO14076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1391864..1392120 | 17..273 | 100 | -> | Plus |
arm_3R | 1392189..1392607 | 274..692 | 100 | -> | Plus |
arm_3R | 1392667..1393079 | 693..1107 | 99 | | Plus |
BO14076.pep Sequence
Translation from 16 to 1123
> BO14076.pep
MTASKEGQESRRTLSDSSAEDVRNTGSRTRTNDDEMWRNELAMNTDSSSV
QPEKREERSHRTGNSNAKLSDAVDVVLRVLLVITFFKLETMTAFKREIHE
EELWLYKNPRRPDIVRGGELLFWVIVAPFLVTIAFYWYTRDRRDFRAASW
AWTLALCMNGIPTSVLKITVGRPRPDYFYRCFPDGVMVLNTTSNGVDTSI
LDFNCTGLPGDINEGRKSFPSGHSSFAFASFGFIAYYIGAKLHAFDSRGR
GHTWRLCIAVIPLFIALLVAVSRTCDYHHHWQDVTIGGLIGLFAGYISYT
QYYPSIFCPDAGIPLVRWPSREGSQYQRLSGKDDNGSRGPHHLDGGDAVR
RPLLADKEESKWYASFLDH
BO14076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-PE | 363 | CG12746-PE | 1..363 | 1..363 | 1950 | 100 | Plus |
CG12746-PD | 363 | CG12746-PD | 1..363 | 1..363 | 1950 | 100 | Plus |
CG12746-PB | 363 | CG12746-PB | 1..363 | 1..363 | 1950 | 100 | Plus |
wun-PA | 300 | CG8804-PA | 123..268 | 158..298 | 184 | 32.5 | Plus |
wun-PB | 379 | CG8804-PB | 202..347 | 158..298 | 184 | 32.5 | Plus |