Clone BO14076 Report

Search the DGRC for BO14076

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG12746-RB
Protein status:BO14076.pep: validated not full length
Sequenced Size:1123

Clone Sequence Records

BO14076.3prime Sequence

720 bp (642 high quality bases) assembled on 2006-05-29

> BO14076.3prime
ATGGTCTAGAAAGCTTGCGTACCATTTGGACTCCTCCTTGTCAGCGAGCA
GAGGTCTCCGCACCGCATCCCCACCATCGAGATGGTGGGGACCACGACTG
CCATTGTCGTCCTTTCCAGACAGTCGCTGGTACTGGCTTCCCTCTCTGCT
GGGCCACCTGACCAGTGGTATGCCGGCATCAGGGCAGAAGATGGAGGGAT
AGTATTGTGTGTAGCTTATATAGCCTGCAAACAGGCCAATCAGCCCGCCG
ATGGTCACATCCTGCCAGTGGTGGTGGTAGTCGCAGGTGCGACTAACTGC
AACCAGCAGTGCGATAAACAGAGGTATCACAGCGATGCAGAGCCGCCAGG
TGTGGCCGCGTCCCCGGCTATCAAAGGCGTGCAGCTTGGCGCCAATGTAA
TAGGCAATGAAACCGAAACTCGCAAAGGCGAACGACGAGTGTCCGCTGGG
GAAGCTCTTGCGGCCTTCGTTTATGTCGCCCGGAAGCCCTGTGCAATTGA
AATCCAGGATGGAGGTGTCCACGCCATTTGACGTTGTGTTAAGCACCATC
ACGCCATCGGGAAAGCAGCGGTAAAAATAGTCGGGCCTGGGCCGCCCCAC
TGTTATCTTTAGTACGCTCGTTGGGATGCCGTTCATGCACAGGGCCAGTG
TCCAGGCCCAGCTGGCGGCTCTAAAGTCCCGCCTGTCTCTTGTGTACCCA
TAGAAGGCGATAGTGGACCA

BO14076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PB 1092 CG12746-RB 393..1089 715..19 3435 99.7 Minus
CG12746-PC 1239 CG12746-RC 540..1236 715..19 3435 99.7 Minus
CG12746-PD 1092 CG12746-RD 393..1089 715..19 3435 99.7 Minus
CG12746-PA 903 CG12746-RA 572..900 347..19 1645 100 Minus
CG12746-PA 903 CG12746-RA 540..576 715..679 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 735..1431 715..19 3455 99.7 Minus
CG12746-RD 1381 CG12746-RD 607..1303 715..19 3455 99.7 Minus
CG12746-RB 1339 CG12746-RB 565..1261 715..19 3455 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5566945..5567357 431..19 2065 100 Minus
3R 32079331 3R 5566602..5566885 715..432 1390 99.3 Minus
Blast to na_te.dros performed on 2015-02-03 06:42:30 has no hits.

BO14076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:30 Download gff for BO14076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PD 390..1092 15..719 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:37 Download gff for BO14076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PD 390..1092 15..719 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:24:40 Download gff for BO14076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 562..1271 10..719 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:40:23 Download gff for BO14076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 562..1271 10..719 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:40:23 Download gff for BO14076.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5566599..5566885 432..719 98 -> Minus
3R 5566945..5567367 10..431 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:24:40 Download gff for BO14076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1392321..1392607 432..719 98 -> Minus
arm_3R 1392667..1393089 10..431 99   Minus

BO14076.5prime Sequence

748 bp (655 high quality bases) assembled on 2006-05-29

> BO14076.5prime
GAAGTTATCAGTCGACATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGC
GAACCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGG
ACCAGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACAC
GGACAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAA
CAGGAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGC
GTTCTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAA
ACGGGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGAC
CGGACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCC
TTTCTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGGACTT
TAGAGCCGCCAGCTGGGCCTGGACACTGGCCCTGTGCATGAACGGCATCC
CAACGAGCGTACTAAAGATAACAGTGGGGCGGCCCAGGCCCGACTATTTT
TACCGCTGCTTTCCCGATGGCGTGATGGTGCTTAACACAACGTCAAATGG
CGTGGACACCTCCATCCTGGATTTCAATTGCACAGGGCTTCCGGGCGACA
TAAACGAAGGCCGCAAGAGCTTCCCCAGCGGACACTCGTCGTTCGCCTTT
GCGAGTTTCGGTTTCTTTGCCTATTACATTGGCGCCAAGCTGCACGCC

BO14076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PB 1092 CG12746-RB 1..732 17..748 3635 99.8 Plus
CG12746-PC 1239 CG12746-RC 148..879 17..748 3635 99.8 Plus
CG12746-PD 1092 CG12746-RD 1..732 17..748 3635 99.8 Plus
CG12746-PA 903 CG12746-RA 148..576 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 339..1074 13..748 3650 99.7 Plus
CG12746-RD 1381 CG12746-RD 211..946 13..748 3650 99.7 Plus
CG12746-RB 1339 CG12746-RB 169..904 13..748 3650 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5566467..5566885 274..692 2095 100 Plus
3R 32079331 3R 5566138..5566398 13..273 1290 99.6 Plus
3R 32079331 3R 5566945..5567000 693..748 265 98.2 Plus
Blast to na_te.dros performed on 2015-02-12 05:42:57 has no hits.

BO14076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:31 Download gff for BO14076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PD 1..732 17..748 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:38 Download gff for BO14076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PD 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:46 Download gff for BO14076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 169..904 13..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:18 Download gff for BO14076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 169..904 13..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:18 Download gff for BO14076.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5566138..5566398 13..273 99 -> Plus
3R 5566467..5566885 274..692 100 -> Plus
3R 5566945..5567000 693..748 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:46 Download gff for BO14076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1391860..1392120 13..273 99 -> Plus
arm_3R 1392189..1392607 274..692 100 -> Plus
arm_3R 1392667..1392722 693..748 98   Plus

BO14076.complete Sequence

1123 bp assembled on 2006-10-11

GenBank Submission: FJ633017

> BO14076.complete
GAAGTTATCAGTCGACATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGC
GAACCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGG
ACCAGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACAC
GGACAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAA
CAGGAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGC
GTTCTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAA
ACGGGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGAC
CGGACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCC
TTTCTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGGACTT
TAGAGCCGCCAGCTGGGCCTGGACACTGGCCCTGTGCATGAACGGCATCC
CAACGAGCGTACTAAAGATAACAGTGGGGCGGCCCAGGCCCGACTATTTT
TACCGCTGCTTTCCCGATGGCGTGATGGTGCTTAACACAACGTCAAATGG
CGTGGACACCTCCATCCTGGATTTCAATTGCACAGGGCTTCCGGGCGACA
TAAACGAAGGCCGCAAGAGCTTCCCCAGCGGACACTCGTCGTTCGCCTTT
GCGAGTTTCGGTTTCATTGCCTATTACATTGGCGCCAAGCTGCACGCCTT
TGATAGCCGGGGACGCGGCCACACCTGGCGGCTCTGCATCGCTGTGATAC
CTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCTGCGACTACCAC
CACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGCCTGTTTGCAGG
CTATATAAGCTACACACAATACTATCCCTCCATCTTCTGCCCTGATGCCG
GCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCCAGTACCAGCGA
CTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCACCATCTCGATGG
TGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGAGGAGTCCAAAT
GGTACGCAAGCTTTCTAGACCAT

BO14076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1092 CG12746-PE 1..1089 17..1105 5445 100 Plus
CG12746-RD 1092 CG12746-PD 1..1089 17..1105 5445 100 Plus
CG12746-RB 1092 CG12746-PB 1..1089 17..1105 5445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 339..1431 13..1105 5450 99.9 Plus
CG12746-RD 1381 CG12746-RD 211..1303 13..1105 5450 99.9 Plus
CG12746-RB 1339 CG12746-RB 169..1261 13..1105 5450 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5566467..5566885 274..692 2095 100 Plus
3R 32079331 3R 5566945..5567357 693..1105 2065 100 Plus
3R 32079331 3R 5566138..5566398 13..273 1290 99.6 Plus
Blast to na_te.dros performed on 2014-11-27 10:32:02 has no hits.

BO14076.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:40 Download gff for BO14076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 1..1092 17..1109 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:35 Download gff for BO14076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 339..1441 13..1114 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:47 Download gff for BO14076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 173..1261 17..1107 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:40 Download gff for BO14076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 339..1441 13..1114 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:23 Download gff for BO14076.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 173..1261 17..1107 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:23 Download gff for BO14076.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5566142..5566398 17..273 100 -> Plus
3R 5566467..5566885 274..692 100 -> Plus
3R 5566945..5567357 693..1107 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:47 Download gff for BO14076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1391864..1392120 17..273 100 -> Plus
arm_3R 1392189..1392607 274..692 100 -> Plus
arm_3R 1392667..1393079 693..1107 99   Plus

BO14076.pep Sequence

Translation from 16 to 1123

> BO14076.pep
MTASKEGQESRRTLSDSSAEDVRNTGSRTRTNDDEMWRNELAMNTDSSSV
QPEKREERSHRTGNSNAKLSDAVDVVLRVLLVITFFKLETMTAFKREIHE
EELWLYKNPRRPDIVRGGELLFWVIVAPFLVTIAFYWYTRDRRDFRAASW
AWTLALCMNGIPTSVLKITVGRPRPDYFYRCFPDGVMVLNTTSNGVDTSI
LDFNCTGLPGDINEGRKSFPSGHSSFAFASFGFIAYYIGAKLHAFDSRGR
GHTWRLCIAVIPLFIALLVAVSRTCDYHHHWQDVTIGGLIGLFAGYISYT
QYYPSIFCPDAGIPLVRWPSREGSQYQRLSGKDDNGSRGPHHLDGGDAVR
RPLLADKEESKWYASFLDH

BO14076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PE 363 CG12746-PE 1..363 1..363 1950 100 Plus
CG12746-PD 363 CG12746-PD 1..363 1..363 1950 100 Plus
CG12746-PB 363 CG12746-PB 1..363 1..363 1950 100 Plus
wun-PA 300 CG8804-PA 123..268 158..298 184 32.5 Plus
wun-PB 379 CG8804-PB 202..347 158..298 184 32.5 Plus