Clone BO14077 Report

Search the DGRC for BO14077

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG33205-RH
Protein status:BO14077.pep: Imported from assembly
Sequenced Size:1099

Clone Sequence Records

BO14077.3prime Sequence

635 bp (574 high quality bases) assembled on 2006-05-29

> BO14077.3prime
ATGGTCTAGAAAGCTTGCGCCGAAAATGTGCTGGGTGCCCGGAGGCACCT
TGTAGCTGGGATAGCCATTGTTCAACTGGTGCTTGGCAAAGAAGGGTGTG
TAGTCCCGGTTAACTCTCCTGGGACGGCAGACGGGACCCAACGCCAACTG
GCGTCGTTCCTCGTTCTCGCGAGCCGCGGCCTCCTTGTACTCCGGTGGTG
GCCATTTCAAATCTCCGCGCAATTTGCTGCCTCCCTGATAACTGACGGCG
GCTGGCTGCGAAGTGTAGACTGGTGCAGGCTTCTGGCTGACTGGAGCCTC
CTTGCGCAGGGTGATGATGCCGGGACTGGCGCCCCGGTAGCTATCCTGGC
CAGCGTAGGCTCCCGGATACTGCTGCTGCTGCTGTTGTTGCTGCTGCTGC
AGATCAGTCTGATCCTGCGAGTAGGGCAACTGGGGCTGCGAATAAGAATT
GTATGGGGGTTGAGCATAGGTCGAGCCACCATTTTTGCTGTGGGTAATAG
GATGGCTGTTGCTGTTGCTGCTGTTGGTACGGTGAAGCCTGGTACGATGG
CTGCTGCTGCTGCTGCTGCGGCTGGTTCCACTGTGGTGGCTGATAGGGCG
CCTGAACCTGCGATTGAGGCTGATACTGCTGCTGC

BO14077.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG33205-PB 1506 CG33205-RB 1037..1503 485..19 2335 100 Minus
CG33205-PE 948 CG33205-RE 479..945 485..19 2335 100 Minus
CG33205-PC 1506 CG33205-RC 1037..1503 485..19 2335 100 Minus
CG33205-PF 1065 CG33205-RF 596..1062 485..19 2335 100 Minus
CG33205-PA 1389 CG33205-RA 920..1386 485..19 2335 100 Minus
CG33205-PG 1065 CG33205-RG 596..1062 485..19 2335 100 Minus
CG33205-PH 1068 CG33205-RH 599..1065 485..19 2335 100 Minus
CG33205-PI 621 CG33205-RI 199..618 438..19 2100 100 Minus
CG33205-PB 1506 CG33205-RB 888..1040 635..483 740 99.3 Minus
CG33205-PE 948 CG33205-RE 330..482 635..483 740 99.3 Minus
CG33205-PC 1506 CG33205-RC 888..1040 635..483 740 99.3 Minus
CG33205-PF 1065 CG33205-RF 447..599 635..483 740 99.3 Minus
CG33205-PA 1389 CG33205-RA 771..923 635..483 740 99.3 Minus
CG33205-PG 1065 CG33205-RG 447..599 635..483 740 99.3 Minus
CG33205-PH 1068 CG33205-RH 450..602 635..483 740 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG43897-RR 3268 CG43897-RR 1322..1937 635..19 3045 99.7 Minus
CG43897-RQ 2827 CG43897-RQ 881..1496 635..19 3045 99.7 Minus
CG43897-RP 2913 CG43897-RP 967..1582 635..19 3045 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9832279..9832680 635..233 1950 99.5 Minus
3L 28110227 3L 9832738..9832867 234..105 650 100 Minus
3L 28110227 3L 9832927..9833014 106..19 440 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:46:23 has no hits.

BO14077.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:32 Download gff for BO14077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33205-PC 888..1506 15..635 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:40 Download gff for BO14077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33205-PF 447..1065 15..635 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:25 Download gff for BO14077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43897-RP 967..1589 10..635 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:49 Download gff for BO14077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43897-RP 967..1589 10..635 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:49 Download gff for BO14077.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9832279..9832679 234..635 99 -> Minus
3L 9832739..9832866 106..233 100 -> Minus
3L 9832928..9833021 10..105 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:25 Download gff for BO14077.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9825379..9825779 234..635 99 -> Minus
arm_3L 9825839..9825966 106..233 100 -> Minus
arm_3L 9826028..9826121 10..105 96   Minus

BO14077.5prime Sequence

720 bp (615 high quality bases) assembled on 2006-05-29

> BO14077.5prime
GAAGTTATCAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGC
AGTTCAACTCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACA
TTGAACCGCGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGA
TCAAATAACGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCG
TCGAAGAGGAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGG
CCACCGGCCTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCA
GACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACG
CTCCCACAGCAGCAGCTGCCGCTCCACCTCAGCAGCAGCAGTACGGTGCT
CCGTCTTACGATGGCCAGCAGCCTGGAGCACAGTGGCAACAGCAACAGCA
GCAGCAGCAGGTTCCGCAGCAGCAGTATCAGCCTCAATCGCAGGCTTCGG
CGCCCTATCAGCCACCACAGTGGAACCAGCCGCAGCAGCAGCAGCAGCAG
CCATCGTACCAGGCTTCACCGTACCAACAGCAGCAACAGCAACAGCCATC
CTATTACCCACAGCAAAATGGTGGCTCGACCTATGCTCAACCCCCATACA
ATTCTTATTCGCAGCCCCCAGTTGCCCTACTCGCAGGATCAAACTGGATC
TGCAGCAGCAGCCACAACAG

BO14077.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG33205-PH 1068 CG33205-RH 1..652 17..668 3210 99.6 Plus
CG33205-PF 1065 CG33205-RF 1..372 17..388 1860 100 Plus
CG33205-PG 1065 CG33205-RG 1..372 17..388 1860 100 Plus
CG33205-PB 1506 CG33205-RB 1..366 17..382 1830 100 Plus
CG33205-PC 1506 CG33205-RC 1..366 17..382 1830 100 Plus
CG33205-PB 1506 CG33205-RB 804..1090 382..668 1385 99.3 Plus
CG33205-PC 1506 CG33205-RC 804..1090 382..668 1385 99.3 Plus
CG33205-PA 1389 CG33205-RA 687..973 382..668 1385 99.3 Plus
CG33205-PF 1065 CG33205-RF 364..649 383..668 1380 99.3 Plus
CG33205-PG 1065 CG33205-RG 364..649 383..668 1380 99.3 Plus
CG33205-PE 948 CG33205-RE 247..532 383..668 1380 99.3 Plus
CG33205-PE 948 CG33205-RE 3..255 136..388 1265 100 Plus
CG33205-PA 1389 CG33205-RA 3..249 136..382 1235 100 Plus
CG33205-PI 621 CG33205-RI 49..202 230..383 770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG43897-RH 2802 CG43897-RH 407..1108 17..720 3410 99.1 Plus
CG43897-RG 3056 CG43897-RG 664..1362 17..720 3355 98.7 Plus
CG43897-RF 2799 CG43897-RF 407..1105 17..720 3355 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9832191..9832531 378..720 1555 98.3 Plus
3L 28110227 3L 9830633..9830785 230..382 765 100 Plus
3L 28110227 3L 9820441..9820560 17..136 600 100 Plus
3L 28110227 3L 9824545..9824641 135..231 485 100 Plus
Blast to na_te.dros performed 2015-02-11 09:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6916 357..553 222 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2282..2551 317..599 220 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..7009 336..598 220 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..7036 336..616 215 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6973 427..623 193 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2385..2632 354..618 157 57.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3222..3428 446..652 153 54.8 Plus

BO14077.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:33 Download gff for BO14077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33205-PH 1..702 17..720 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:41 Download gff for BO14077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33205-PH 1..702 17..720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:05:53 Download gff for BO14077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43897-RH 399..1108 9..720 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:54 Download gff for BO14077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43897-RH 399..1108 9..720 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:54 Download gff for BO14077.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9832196..9832531 383..720 98   Plus
3L 9820433..9820559 9..135 96 -> Plus
3L 9824546..9824640 136..230 100 -> Plus
3L 9830634..9830785 231..382 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:05:53 Download gff for BO14077.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9817646..9817740 136..230 100 -> Plus
arm_3L 9813533..9813659 9..135 96 -> Plus
arm_3L 9823734..9823885 231..382 100 -> Plus
arm_3L 9825296..9825631 383..720 98   Plus

BO14077.complete Sequence

1099 bp assembled on 2008-08-14

GenBank Submission: FJ633018

> BO14077.complete
GAAGTTATCAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGC
AGTTCAACTCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACA
TTGAACCGCGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGA
TCAAATAACGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCG
TCGAAGAGGAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGG
CCACCGGCCTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCA
GACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACG
CTCCCACAGCAGCAGCTGCCGCTCCACCTCAGCAGCAGCAGTACGGTGCT
CCGTCTTACGATGGCCAGCAGCCTGGAGCACAGTGGCAACAGCAACAGCA
GCAGCAGCAGGTTCCGCAGCAGCAGTATCAGCCTCAATCGCAGGCTCAGG
CGCCCTATCAGCCACCACAGTGGAACCAGCCGCAGCAGCAGCAGCAGCAG
CCATCGTACCAGGCTTCACCGTACCAACAGCAGCAACAGCAACAGCCATC
CTATTACCCACAGCAAAATGGTGGCTCGACCTATGCTCAACCCCCATACA
ATTCTTATTCGCAGCCCCAGTTGCCCTACTCGCAGGATCAGACTGATCTG
CAGCAGCAGCAACAACAGCAGCAGCAGCAGTATCCGGGAGCCTACGCTGG
CCAGGATAGCTACCGGGGCGCCAGTCCCGGCATCATCACCCTGCGCAAGG
AGGCTCCAGTCAGCCAGAAGCCTGCACCAGTCTACACTTCGCAGCCAGCC
GCCGTCAGTTATCAGGGAGGCAGCAAATTGCGCGGAGATTTGAAATGGCC
ACCACCGGAGTACAAGGAGGCCGCGGCTCGCGAGAACGAGGAACGACGCC
AGTTGGCGTTGGGTCCCGTCTGCCGTCCCAGGAGAGTTAACCGGGACTAC
ACACCCTTCTTTGCCAAGCACCAGTTGAACAATGGCTATCCCAGCTACAA
GGTGCCTCCGGGCACCCAGCACATTTTCGGCGCAAGCTTTCTAGACCAT

BO14077.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG43897-RH 1068 CG43897-PH 1..1065 17..1081 5325 100 Plus
CG43897-RG 1065 CG43897-PG 1..1062 17..1081 5245 99.7 Plus
CG43897-RF 1065 CG43897-PF 1..1062 17..1081 5245 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG43897-RH 2802 CG43897-RH 407..1471 17..1081 5325 100 Plus
CG43897-RG 3056 CG43897-RG 664..1725 17..1081 5245 99.7 Plus
CG43897-RF 2799 CG43897-RF 407..1468 17..1081 5245 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9832191..9832680 378..867 2450 100 Plus
3L 28110227 3L 9830633..9830785 230..382 765 100 Plus
3L 28110227 3L 9832738..9832867 866..995 650 100 Plus
3L 28110227 3L 9820441..9820560 17..136 600 100 Plus
3L 28110227 3L 9824545..9824641 135..231 485 100 Plus
3L 28110227 3L 9832927..9833014 994..1081 440 100 Plus
Blast to na_te.dros performed 2014-11-27 10:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6916 357..553 240 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2282..2673 317..722 239 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..7009 336..598 238 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..7078 427..730 209 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2385..2632 354..618 158 56.4 Plus

BO14077.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:28 Download gff for BO14077.complete
Subject Subject Range Query Range Percent Splice Strand
CG33205-RH 395..1474 9..1090 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:51 Download gff for BO14077.complete
Subject Subject Range Query Range Percent Splice Strand
CG43897-RH 407..1471 17..1083 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:15 Download gff for BO14077.complete
Subject Subject Range Query Range Percent Splice Strand
CG33205-RH 403..1467 17..1083 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:51 Download gff for BO14077.complete
Subject Subject Range Query Range Percent Splice Strand
CG43897-RH 407..1471 17..1083 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:51 Download gff for BO14077.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9820441..9820559 17..135 100 -> Plus
3L 9824546..9824640 136..230 100 -> Plus
3L 9830634..9830785 231..382 100 -> Plus
3L 9832196..9832679 383..866 100 -> Plus
3L 9832739..9832866 867..994 100 -> Plus
3L 9832928..9833014 995..1083 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:51 Download gff for BO14077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9813541..9813659 17..135 100 -> Plus
arm_3L 9817646..9817740 136..230 100 -> Plus
arm_3L 9823734..9823885 231..382 100 -> Plus
arm_3L 9825296..9825779 383..866 100 -> Plus
arm_3L 9825839..9825966 867..994 100 -> Plus
arm_3L 9826028..9826114 995..1083 97   Plus

BO14077.pep Sequence

Translation from 16 to 1099

> BO14077.pep
MAALQRKLVHKQFNSPMGLYSQENVKATLNRELKAFGGEGIEVDDQITKP
LNLANSAVLRAVEEEEQQAKCGYKRVAWPPASEERIIREFTPQPQTQSPA
PGAGGYYPQAHAPTAAAAAPPQQQQYGAPSYDGQQPGAQWQQQQQQQQVP
QQQYQPQSQAQAPYQPPQWNQPQQQQQQPSYQASPYQQQQQQQPSYYPQQ
NGGSTYAQPPYNSYSQPQLPYSQDQTDLQQQQQQQQQQYPGAYAGQDSYR
GASPGIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRGDLKWPPPEYK
EAAARENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNGYPSYKVPPGT
QHIFGASFLDH

BO14077.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG43897-PH 355 CG43897-PH 1..355 1..355 1911 100 Plus
CG43897-PG 354 CG43897-PG 1..354 1..355 1894 99.7 Plus
CG43897-PF 354 CG43897-PF 1..354 1..355 1894 99.7 Plus
CG43897-PE 315 CG43897-PE 2..315 41..355 1691 99.7 Plus
CG43897-PQ 299 CG43897-PQ 17..299 72..355 1539 99.6 Plus