Clone Sequence Records
BO14077.3prime Sequence
635 bp (574 high quality bases) assembled on 2006-05-29
> BO14077.3prime
ATGGTCTAGAAAGCTTGCGCCGAAAATGTGCTGGGTGCCCGGAGGCACCT
TGTAGCTGGGATAGCCATTGTTCAACTGGTGCTTGGCAAAGAAGGGTGTG
TAGTCCCGGTTAACTCTCCTGGGACGGCAGACGGGACCCAACGCCAACTG
GCGTCGTTCCTCGTTCTCGCGAGCCGCGGCCTCCTTGTACTCCGGTGGTG
GCCATTTCAAATCTCCGCGCAATTTGCTGCCTCCCTGATAACTGACGGCG
GCTGGCTGCGAAGTGTAGACTGGTGCAGGCTTCTGGCTGACTGGAGCCTC
CTTGCGCAGGGTGATGATGCCGGGACTGGCGCCCCGGTAGCTATCCTGGC
CAGCGTAGGCTCCCGGATACTGCTGCTGCTGCTGTTGTTGCTGCTGCTGC
AGATCAGTCTGATCCTGCGAGTAGGGCAACTGGGGCTGCGAATAAGAATT
GTATGGGGGTTGAGCATAGGTCGAGCCACCATTTTTGCTGTGGGTAATAG
GATGGCTGTTGCTGTTGCTGCTGTTGGTACGGTGAAGCCTGGTACGATGG
CTGCTGCTGCTGCTGCTGCGGCTGGTTCCACTGTGGTGGCTGATAGGGCG
CCTGAACCTGCGATTGAGGCTGATACTGCTGCTGC
BO14077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33205-PB | 1506 | CG33205-RB | 1037..1503 | 485..19 | 2335 | 100 | Minus |
CG33205-PE | 948 | CG33205-RE | 479..945 | 485..19 | 2335 | 100 | Minus |
CG33205-PC | 1506 | CG33205-RC | 1037..1503 | 485..19 | 2335 | 100 | Minus |
CG33205-PF | 1065 | CG33205-RF | 596..1062 | 485..19 | 2335 | 100 | Minus |
CG33205-PA | 1389 | CG33205-RA | 920..1386 | 485..19 | 2335 | 100 | Minus |
CG33205-PG | 1065 | CG33205-RG | 596..1062 | 485..19 | 2335 | 100 | Minus |
CG33205-PH | 1068 | CG33205-RH | 599..1065 | 485..19 | 2335 | 100 | Minus |
CG33205-PI | 621 | CG33205-RI | 199..618 | 438..19 | 2100 | 100 | Minus |
CG33205-PB | 1506 | CG33205-RB | 888..1040 | 635..483 | 740 | 99.3 | Minus |
CG33205-PE | 948 | CG33205-RE | 330..482 | 635..483 | 740 | 99.3 | Minus |
CG33205-PC | 1506 | CG33205-RC | 888..1040 | 635..483 | 740 | 99.3 | Minus |
CG33205-PF | 1065 | CG33205-RF | 447..599 | 635..483 | 740 | 99.3 | Minus |
CG33205-PA | 1389 | CG33205-RA | 771..923 | 635..483 | 740 | 99.3 | Minus |
CG33205-PG | 1065 | CG33205-RG | 447..599 | 635..483 | 740 | 99.3 | Minus |
CG33205-PH | 1068 | CG33205-RH | 450..602 | 635..483 | 740 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43897-RR | 3268 | CG43897-RR | 1322..1937 | 635..19 | 3045 | 99.7 | Minus |
CG43897-RQ | 2827 | CG43897-RQ | 881..1496 | 635..19 | 3045 | 99.7 | Minus |
CG43897-RP | 2913 | CG43897-RP | 967..1582 | 635..19 | 3045 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9832279..9832680 | 635..233 | 1950 | 99.5 | Minus |
3L | 28110227 | 3L | 9832738..9832867 | 234..105 | 650 | 100 | Minus |
3L | 28110227 | 3L | 9832927..9833014 | 106..19 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:46:23 has no hits.
BO14077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:32 Download gff for
BO14077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33205-PC | 888..1506 | 15..635 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:40 Download gff for
BO14077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33205-PF | 447..1065 | 15..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:25 Download gff for
BO14077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43897-RP | 967..1589 | 10..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:49 Download gff for
BO14077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43897-RP | 967..1589 | 10..635 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:49 Download gff for
BO14077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9832279..9832679 | 234..635 | 99 | -> | Minus |
3L | 9832739..9832866 | 106..233 | 100 | -> | Minus |
3L | 9832928..9833021 | 10..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:25 Download gff for
BO14077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9825379..9825779 | 234..635 | 99 | -> | Minus |
arm_3L | 9825839..9825966 | 106..233 | 100 | -> | Minus |
arm_3L | 9826028..9826121 | 10..105 | 96 | | Minus |
BO14077.5prime Sequence
720 bp (615 high quality bases) assembled on 2006-05-29
> BO14077.5prime
GAAGTTATCAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGC
AGTTCAACTCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACA
TTGAACCGCGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGA
TCAAATAACGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCG
TCGAAGAGGAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGG
CCACCGGCCTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCA
GACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACG
CTCCCACAGCAGCAGCTGCCGCTCCACCTCAGCAGCAGCAGTACGGTGCT
CCGTCTTACGATGGCCAGCAGCCTGGAGCACAGTGGCAACAGCAACAGCA
GCAGCAGCAGGTTCCGCAGCAGCAGTATCAGCCTCAATCGCAGGCTTCGG
CGCCCTATCAGCCACCACAGTGGAACCAGCCGCAGCAGCAGCAGCAGCAG
CCATCGTACCAGGCTTCACCGTACCAACAGCAGCAACAGCAACAGCCATC
CTATTACCCACAGCAAAATGGTGGCTCGACCTATGCTCAACCCCCATACA
ATTCTTATTCGCAGCCCCCAGTTGCCCTACTCGCAGGATCAAACTGGATC
TGCAGCAGCAGCCACAACAG
BO14077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33205-PH | 1068 | CG33205-RH | 1..652 | 17..668 | 3210 | 99.6 | Plus |
CG33205-PF | 1065 | CG33205-RF | 1..372 | 17..388 | 1860 | 100 | Plus |
CG33205-PG | 1065 | CG33205-RG | 1..372 | 17..388 | 1860 | 100 | Plus |
CG33205-PB | 1506 | CG33205-RB | 1..366 | 17..382 | 1830 | 100 | Plus |
CG33205-PC | 1506 | CG33205-RC | 1..366 | 17..382 | 1830 | 100 | Plus |
CG33205-PB | 1506 | CG33205-RB | 804..1090 | 382..668 | 1385 | 99.3 | Plus |
CG33205-PC | 1506 | CG33205-RC | 804..1090 | 382..668 | 1385 | 99.3 | Plus |
CG33205-PA | 1389 | CG33205-RA | 687..973 | 382..668 | 1385 | 99.3 | Plus |
CG33205-PF | 1065 | CG33205-RF | 364..649 | 383..668 | 1380 | 99.3 | Plus |
CG33205-PG | 1065 | CG33205-RG | 364..649 | 383..668 | 1380 | 99.3 | Plus |
CG33205-PE | 948 | CG33205-RE | 247..532 | 383..668 | 1380 | 99.3 | Plus |
CG33205-PE | 948 | CG33205-RE | 3..255 | 136..388 | 1265 | 100 | Plus |
CG33205-PA | 1389 | CG33205-RA | 3..249 | 136..382 | 1235 | 100 | Plus |
CG33205-PI | 621 | CG33205-RI | 49..202 | 230..383 | 770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43897-RH | 2802 | CG43897-RH | 407..1108 | 17..720 | 3410 | 99.1 | Plus |
CG43897-RG | 3056 | CG43897-RG | 664..1362 | 17..720 | 3355 | 98.7 | Plus |
CG43897-RF | 2799 | CG43897-RF | 407..1105 | 17..720 | 3355 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9832191..9832531 | 378..720 | 1555 | 98.3 | Plus |
3L | 28110227 | 3L | 9830633..9830785 | 230..382 | 765 | 100 | Plus |
3L | 28110227 | 3L | 9820441..9820560 | 17..136 | 600 | 100 | Plus |
3L | 28110227 | 3L | 9824545..9824641 | 135..231 | 485 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6916 | 357..553 | 222 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2282..2551 | 317..599 | 220 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..7009 | 336..598 | 220 | 57.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..7036 | 336..616 | 215 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6973 | 427..623 | 193 | 61.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2632 | 354..618 | 157 | 57.3 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3222..3428 | 446..652 | 153 | 54.8 | Plus |
BO14077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:33 Download gff for
BO14077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33205-PH | 1..702 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:41 Download gff for
BO14077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33205-PH | 1..702 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:05:53 Download gff for
BO14077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43897-RH | 399..1108 | 9..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:54 Download gff for
BO14077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43897-RH | 399..1108 | 9..720 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:54 Download gff for
BO14077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9832196..9832531 | 383..720 | 98 | | Plus |
3L | 9820433..9820559 | 9..135 | 96 | -> | Plus |
3L | 9824546..9824640 | 136..230 | 100 | -> | Plus |
3L | 9830634..9830785 | 231..382 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:05:53 Download gff for
BO14077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9817646..9817740 | 136..230 | 100 | -> | Plus |
arm_3L | 9813533..9813659 | 9..135 | 96 | -> | Plus |
arm_3L | 9823734..9823885 | 231..382 | 100 | -> | Plus |
arm_3L | 9825296..9825631 | 383..720 | 98 | | Plus |
BO14077.complete Sequence
1099 bp assembled on 2008-08-14
GenBank Submission: FJ633018
> BO14077.complete
GAAGTTATCAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGC
AGTTCAACTCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACA
TTGAACCGCGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGA
TCAAATAACGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCG
TCGAAGAGGAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGG
CCACCGGCCTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCA
GACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACG
CTCCCACAGCAGCAGCTGCCGCTCCACCTCAGCAGCAGCAGTACGGTGCT
CCGTCTTACGATGGCCAGCAGCCTGGAGCACAGTGGCAACAGCAACAGCA
GCAGCAGCAGGTTCCGCAGCAGCAGTATCAGCCTCAATCGCAGGCTCAGG
CGCCCTATCAGCCACCACAGTGGAACCAGCCGCAGCAGCAGCAGCAGCAG
CCATCGTACCAGGCTTCACCGTACCAACAGCAGCAACAGCAACAGCCATC
CTATTACCCACAGCAAAATGGTGGCTCGACCTATGCTCAACCCCCATACA
ATTCTTATTCGCAGCCCCAGTTGCCCTACTCGCAGGATCAGACTGATCTG
CAGCAGCAGCAACAACAGCAGCAGCAGCAGTATCCGGGAGCCTACGCTGG
CCAGGATAGCTACCGGGGCGCCAGTCCCGGCATCATCACCCTGCGCAAGG
AGGCTCCAGTCAGCCAGAAGCCTGCACCAGTCTACACTTCGCAGCCAGCC
GCCGTCAGTTATCAGGGAGGCAGCAAATTGCGCGGAGATTTGAAATGGCC
ACCACCGGAGTACAAGGAGGCCGCGGCTCGCGAGAACGAGGAACGACGCC
AGTTGGCGTTGGGTCCCGTCTGCCGTCCCAGGAGAGTTAACCGGGACTAC
ACACCCTTCTTTGCCAAGCACCAGTTGAACAATGGCTATCCCAGCTACAA
GGTGCCTCCGGGCACCCAGCACATTTTCGGCGCAAGCTTTCTAGACCAT
BO14077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43897-RH | 1068 | CG43897-PH | 1..1065 | 17..1081 | 5325 | 100 | Plus |
CG43897-RG | 1065 | CG43897-PG | 1..1062 | 17..1081 | 5245 | 99.7 | Plus |
CG43897-RF | 1065 | CG43897-PF | 1..1062 | 17..1081 | 5245 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43897-RH | 2802 | CG43897-RH | 407..1471 | 17..1081 | 5325 | 100 | Plus |
CG43897-RG | 3056 | CG43897-RG | 664..1725 | 17..1081 | 5245 | 99.7 | Plus |
CG43897-RF | 2799 | CG43897-RF | 407..1468 | 17..1081 | 5245 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9832191..9832680 | 378..867 | 2450 | 100 | Plus |
3L | 28110227 | 3L | 9830633..9830785 | 230..382 | 765 | 100 | Plus |
3L | 28110227 | 3L | 9832738..9832867 | 866..995 | 650 | 100 | Plus |
3L | 28110227 | 3L | 9820441..9820560 | 17..136 | 600 | 100 | Plus |
3L | 28110227 | 3L | 9824545..9824641 | 135..231 | 485 | 100 | Plus |
3L | 28110227 | 3L | 9832927..9833014 | 994..1081 | 440 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6916 | 357..553 | 240 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2282..2673 | 317..722 | 239 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..7009 | 336..598 | 238 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7078 | 427..730 | 209 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2632 | 354..618 | 158 | 56.4 | Plus |
BO14077.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:28 Download gff for
BO14077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33205-RH | 395..1474 | 9..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:51 Download gff for
BO14077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43897-RH | 407..1471 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:15 Download gff for
BO14077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33205-RH | 403..1467 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:51 Download gff for
BO14077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43897-RH | 407..1471 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:51 Download gff for
BO14077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9820441..9820559 | 17..135 | 100 | -> | Plus |
3L | 9824546..9824640 | 136..230 | 100 | -> | Plus |
3L | 9830634..9830785 | 231..382 | 100 | -> | Plus |
3L | 9832196..9832679 | 383..866 | 100 | -> | Plus |
3L | 9832739..9832866 | 867..994 | 100 | -> | Plus |
3L | 9832928..9833014 | 995..1083 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:51 Download gff for
BO14077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9813541..9813659 | 17..135 | 100 | -> | Plus |
arm_3L | 9817646..9817740 | 136..230 | 100 | -> | Plus |
arm_3L | 9823734..9823885 | 231..382 | 100 | -> | Plus |
arm_3L | 9825296..9825779 | 383..866 | 100 | -> | Plus |
arm_3L | 9825839..9825966 | 867..994 | 100 | -> | Plus |
arm_3L | 9826028..9826114 | 995..1083 | 97 | | Plus |
BO14077.pep Sequence
Translation from 16 to 1099
> BO14077.pep
MAALQRKLVHKQFNSPMGLYSQENVKATLNRELKAFGGEGIEVDDQITKP
LNLANSAVLRAVEEEEQQAKCGYKRVAWPPASEERIIREFTPQPQTQSPA
PGAGGYYPQAHAPTAAAAAPPQQQQYGAPSYDGQQPGAQWQQQQQQQQVP
QQQYQPQSQAQAPYQPPQWNQPQQQQQQPSYQASPYQQQQQQQPSYYPQQ
NGGSTYAQPPYNSYSQPQLPYSQDQTDLQQQQQQQQQQYPGAYAGQDSYR
GASPGIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRGDLKWPPPEYK
EAAARENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNGYPSYKVPPGT
QHIFGASFLDH
BO14077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43897-PH | 355 | CG43897-PH | 1..355 | 1..355 | 1911 | 100 | Plus |
CG43897-PG | 354 | CG43897-PG | 1..354 | 1..355 | 1894 | 99.7 | Plus |
CG43897-PF | 354 | CG43897-PF | 1..354 | 1..355 | 1894 | 99.7 | Plus |
CG43897-PE | 315 | CG43897-PE | 2..315 | 41..355 | 1691 | 99.7 | Plus |
CG43897-PQ | 299 | CG43897-PQ | 17..299 | 72..355 | 1539 | 99.6 | Plus |