Clone BO14078 Report

Search the DGRC for BO14078

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG10069-RB
Protein status:BO14078.pep: Imported from assembly
Sequenced Size:1732

Clone Sequence Records

BO14078.3prime Sequence

721 bp (597 high quality bases) assembled on 2006-05-29

> BO14078.3prime
ATGGTCTAGAAAGCTTGCTTCAATCCGAATACGATGCGATGCACGACGCA
GTGCAGCGAACTCCTTGAAGACCAGTCGCCCCAGCAGCACCATGGCAATG
ATGTCGGCAGCGATGAGCATGTGGAAGACATACTGCCATCCGGCGGTGGA
GATAAGGCCGGCAAGCAGTGGACCAACTGCCGCTCCGATTGACCCAGTAC
CATCGATAATGGCCGTCACCGTGGCCAGAGCATTGGCATTTCCCTCCAAG
GAGCTGTGCTGGCCCAGCTCTGCACTTACAGAGGTTGTAATCAGGGCATA
TGGTCCGTTCACAAAGATGCCGACCACAATCAAGAGCACTATGCTGATTG
TCATCGACAATGCACCATATTGTTGATACATCAGCAGAATGGGCGAGGCA
ACGAACAACATGCCTGTGCAGACGGTGGCCGACATTCCGCTCACATCTGA
TAGATAGCCCGCAGCTATTGCACCCAAAATACCACCCACATCGAAAAGAG
TGGACAAATCAGCGGACAGTTCTGGACCCAATGTGCTGGATTTTTGTATG
TAAAGTGGCAGCCAGTACATGAAGGTGTAGCTCACCAGCTTGGTAAAGAA
CAACACAGCGAAAACTTCTACCACCCCGGGTATGAATAAAGCATCGATCA
GACTGATGGGACGTCCGCGACCCCTTTGGCACCGCCTCTGGTTGAGATCG
TGGAAGGATTGGAATACGTTC

BO14078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10069-PA 1587 CG10069-RA 1000..1584 603..19 2925 100 Minus
CG10069-PB 1701 CG10069-RB 1114..1698 603..19 2925 100 Minus
CG10069-PC 1587 CG10069-RC 1000..1584 603..19 2925 100 Minus
CG10069-PA 1587 CG10069-RA 927..986 676..617 275 98.3 Minus
CG10069-PB 1701 CG10069-RB 1041..1100 676..617 275 98.3 Minus
CG10069-PC 1587 CG10069-RC 927..986 676..617 275 98.3 Minus
CG10069-PA 1587 CG10069-RA 883..928 721..676 205 97.8 Minus
CG10069-PB 1701 CG10069-RB 997..1042 721..676 205 97.8 Minus
CG10069-PC 1587 CG10069-RC 883..928 721..676 205 97.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RD 2281 CG10069-RD 1124..1825 721..19 3415 99.3 Minus
MFS16-RC 2563 CG10069-RC 1406..2107 721..19 3415 99.3 Minus
MFS16-RB 2399 CG10069-RB 1242..1943 721..19 3415 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21284855..21285223 387..19 1845 100 Minus
2R 25286936 2R 21284409..21284593 721..536 755 97.3 Minus
2R 25286936 2R 21284650..21284798 536..388 745 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:06:15 has no hits.

BO14078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:34 Download gff for BO14078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10069-PA 883..1587 18..721 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:43 Download gff for BO14078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10069-PA 883..1587 18..721 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:49:35 Download gff for BO14078.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 1242..1947 13..721 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:07 Download gff for BO14078.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 1242..1947 13..721 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:07 Download gff for BO14078.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21284409..21284592 537..721 97 -> Minus
2R 21284650..21284798 388..536 100 -> Minus
2R 21284855..21285227 13..387 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:49:35 Download gff for BO14078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17171914..17172097 537..721 97 -> Minus
arm_2R 17172155..17172303 388..536 100 -> Minus
arm_2R 17172360..17172732 13..387 99   Minus

BO14078.5prime Sequence

761 bp (617 high quality bases) assembled on 2006-05-29

> BO14078.5prime
GAAGTTATCAGTCGACATGAGGACAAGTGAACAGAAAAGTAGCTGGCATT
ACTCGCAACCGAAACGGATTCGGGAACCCAGCCACCTGGACGAGCAGCAC
TTGCACCTCGCCCACTGTCCGCGCCGGTCGATGAGAGCTTCACTGGGATT
GGGCAGAACGCGAAAGATGAGCAATAACTACAACGACGTGCCATTCGGCA
TCCGGGCTGTGCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCC
CGCAGAGATTTGCTCTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGC
CTACGCCTGCTATCACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGG
TGCTGCAAGGAAACTGTTCCACAGCGCTGGCTGCATCGGGTCAGGATTGT
GGATATGCGCCCTTTGATGTTCCCGATGCCACCACACTCTTTGGAATGCT
GGACTCGGCCTTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTT
TCGTGGCGGAACGCGTTTCCCTGCGATACTTCTTGTCCATGGGCATGATC
CTCACCGGAGTGTTCACTTACATGTTCGGCATTGCTCGCACCTCCAATAT
CCATAGTTTGTGGTATTTCATAATAGTGCAAATATTCGCTGGCATCTTCC
AGACGACCGGATGGCCAGGTGTAGTGGCCCTCGTGGGTCGTTGGTTTGGA
AAGTCGAAACGCGGGCTCATTTTTTGGATATGGAACAGTCATACGTCCAA
TTGGAAACATT

BO14078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10069-PB 1701 CG10069-RB 1..731 17..747 3605 99.7 Plus
CG10069-PA 1587 CG10069-RA 1..617 131..747 3035 99.6 Plus
CG10069-PC 1587 CG10069-RC 1..617 131..747 3035 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RB 2399 CG10069-RB 246..989 17..761 3655 99.5 Plus
MFS16-RD 2281 CG10069-RD 150..871 39..761 3545 99.4 Plus
MFS16-RC 2563 CG10069-RC 432..1153 39..761 3545 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21283542..21283886 416..761 1635 98.8 Plus
2R 25286936 2R 21282987..21283212 39..264 1130 100 Plus
2R 25286936 2R 21283331..21283482 265..416 760 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:11:52 has no hits.

BO14078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:35 Download gff for BO14078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10069-PB 1..744 17..761 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:44 Download gff for BO14078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10069-PB 1..744 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:49 Download gff for BO14078.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 246..989 17..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:47 Download gff for BO14078.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 246..989 17..761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:47 Download gff for BO14078.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21282543..21282564 17..38 100 -> Plus
2R 21282987..21283212 39..264 100 -> Plus
2R 21283331..21283482 265..416 100 -> Plus
2R 21283543..21283886 417..761 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:49 Download gff for BO14078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17170048..17170069 17..38 100 -> Plus
arm_2R 17170492..17170717 39..264 100 -> Plus
arm_2R 17170836..17170987 265..416 100 -> Plus
arm_2R 17171048..17171391 417..761 98   Plus

BO14078.complete Sequence

1732 bp assembled on 2008-08-14

GenBank Submission: KX799558

> BO14078.complete
GAAGTTATCAGTCGACATGAGGACAAGTGAACAGAAAAGTAGCTGGCATT
ACTCGCAACCGAAACGGATTCGGGAACCCAGCCACCTGGACGAGCAGCAC
TTGCACCTCGCCCACTGTCCGCGCCGGTCGATGAGAGCTTCACTGGGATT
GGGCAGAACGCGAAAGATGAGCAATAACTACAACGACGTGCCATTCGGCA
TCCGGGCTGTGCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCC
CGCAGAGATTTGCTCTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGC
CTACGCCTGCTATCACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGG
TGCTGCAAGGAAACTGTTCCACAGCGCTGGCTGCATCGGGTCAGGATTGT
GGATATGCGCCCTTTGATGTTCCCGATGCCACCACACTCTTTGGAATGCT
GGACTCGGCCTTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTT
TCGTGGCGGAACGCGTTTCCCTGCGATACTTCTTGTCCATGGGCATGATC
CTCACCGGAGTGTTCACTTACATGTTCGGCATTGCTCGCACCTCCAATAT
CCATAGTTTGTGGTATTTCATAATAGTGCAAATATTCGCTGGCATCTTCC
AGACGACCGGATGGCCAGGTGTAGTGGCCCTCGTGGGTCGTTGGTTTGGA
AAGTCGAAACGCGGGCTCATTTTTGGTATATGGAACAGTCATACGTCTAT
TGGAAACATTCTTGGCACGCTGATAGCGGCGCATTATGTGGAATCCGATT
GGGCGCTGTCGTTTGTGGTACCCGGCATTATCATTGCAGCCGTTGGATTT
TTACTCTTCCTTTTCCTAGTGGATCAGCCGGAGATTGTGGGCTGTTATCC
ACAAGCCGGACAGCATGAGCGTCGCGTGGCCAACGAGTCTGATGTGGAAC
AGGACGACGAGGAGCAGGTGCGCCATAACGATGCGGAAATCAACTATAGA
TCTGCTCCCACCGAACGTACTCCAATCCTTCCACGATCTCAACCAGAGGC
GGTGCCAAGGGGTCGCGGACGTCCCATCAGTCTGATCGATGCTTTATTCA
TACCCGGTGTGGTAGAGTTTTCGCTGTGTTTGTTCTTTACCAAGCTGGTG
AGCTACACCTTCATGTACTGGCTGCCACTTTACATACAAAAATCCAGCAC
ATTGGGTCCAGAACTGTCCGCTGATTTGTCCACTCTTTTCGATGTGGGTG
GTATTTTGGGTGCAATAGCTGCGGGCTATCTATCAGATGTGAGCGGAATG
TCGGCCACCGTCTGCACAGGCATGTTGTTCGTTGCCTCGCCCATTCTGCT
GATGTATCAACAATATGGTGCATTGTCGATGACAATCAGCATAGTGCTCT
TGATTGTGGTCGGCATCTTTGTGAACGGACCATATGCCCTGATTACAACC
TCTGTAAGTGCAGAGCTGGGCCAGCACAGCTCCTTGGAGGGAAATGCCAA
TGCTCTGGCCACGGTGACGGCCATTATCGATGGTACTGGGTCAATCGGAG
CGGCAGTTGGTCCACTGCTTGCCGGCCTTATCTCCACCGCCGGATGGCAG
TATGTCTTCCACATGCTCATCGCTGCCGACATCATTGCCATGGTGCTGCT
GGGGCGACTGGTCTTCAAGGAGTTCGCTGCACTGCGTCGTGCATCGCATC
GTATTCGGATTGAAGCAAGCTTTCTAGACCAT

BO14078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RB 1701 CG10069-PB 1..1698 17..1714 8490 100 Plus
MFS16-RD 1587 CG10069-PD 1..1584 131..1714 7920 100 Plus
MFS16-RC 1587 CG10069-PC 1..1584 131..1714 7920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RB 2399 CG10069-RB 246..1943 17..1714 8490 100 Plus
MFS16-RD 2281 CG10069-RD 150..1825 39..1714 8380 100 Plus
MFS16-RC 2563 CG10069-RC 432..2107 39..1714 8380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21283542..21284112 416..986 2855 100 Plus
2R 25286936 2R 21284855..21285223 1346..1714 1845 100 Plus
2R 25286936 2R 21282987..21283212 39..264 1130 100 Plus
2R 25286936 2R 21284381..21284593 985..1197 1065 100 Plus
2R 25286936 2R 21283331..21283482 265..416 760 100 Plus
2R 25286936 2R 21284650..21284798 1197..1345 745 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:39:25 has no hits.

BO14078.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:32 Download gff for BO14078.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 167..1868 17..1720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:22 Download gff for BO14078.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 246..1943 17..1716 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:59 Download gff for BO14078.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 167..1864 17..1716 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:16 Download gff for BO14078.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 246..1943 17..1716 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:16 Download gff for BO14078.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21284855..21285223 1346..1716 99   Plus
2R 21282543..21282564 17..38 100 -> Plus
2R 21282987..21283212 39..264 100 -> Plus
2R 21283331..21283482 265..416 100 -> Plus
2R 21283543..21284111 417..985 100 -> Plus
2R 21284382..21284592 986..1196 100 -> Plus
2R 21284650..21284798 1197..1345 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:22 Download gff for BO14078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17170492..17170717 39..264 100 -> Plus
arm_2R 17170836..17170987 265..416 100 -> Plus
arm_2R 17170048..17170069 17..38 100 -> Plus
arm_2R 17171048..17171616 417..985 100 -> Plus
arm_2R 17171887..17172097 986..1196 100 -> Plus
arm_2R 17172155..17172303 1197..1345 100 -> Plus
arm_2R 17172360..17172728 1346..1716 99   Plus

BO14078.pep Sequence

Translation from 16 to 1732

> BO14078.pep
MRTSEQKSSWHYSQPKRIREPSHLDEQHLHLAHCPRRSMRASLGLGRTRK
MSNNYNDVPFGIRAVQRLSRQCCTRFHARRDLLYKMSVFVLTFLAYACYH
MCRKPISVVKSVLQGNCSTALAASGQDCGYAPFDVPDATTLFGMLDSAFL
FSYAIAMFASGFVAERVSLRYFLSMGMILTGVFTYMFGIARTSNIHSLWY
FIIVQIFAGIFQTTGWPGVVALVGRWFGKSKRGLIFGIWNSHTSIGNILG
TLIAAHYVESDWALSFVVPGIIIAAVGFLLFLFLVDQPEIVGCYPQAGQH
ERRVANESDVEQDDEEQVRHNDAEINYRSAPTERTPILPRSQPEAVPRGR
GRPISLIDALFIPGVVEFSLCLFFTKLVSYTFMYWLPLYIQKSSTLGPEL
SADLSTLFDVGGILGAIAAGYLSDVSGMSATVCTGMLFVASPILLMYQQY
GALSMTISIVLLIVVGIFVNGPYALITTSVSAELGQHSSLEGNANALATV
TAIIDGTGSIGAAVGPLLAGLISTAGWQYVFHMLIAADIIAMVLLGRLVF
KEFAALRRASHRIRIEASFLDH

BO14078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-PB 566 CG10069-PB 1..566 1..566 2915 100 Plus
MFS16-PD 528 CG10069-PD 1..528 39..566 2702 100 Plus
MFS16-PC 528 CG10069-PC 1..528 39..566 2702 100 Plus
MFS16-PA 528 CG10069-PA 1..528 39..566 2702 100 Plus