Clone Sequence Records
BO14078.3prime Sequence
721 bp (597 high quality bases) assembled on 2006-05-29
> BO14078.3prime
ATGGTCTAGAAAGCTTGCTTCAATCCGAATACGATGCGATGCACGACGCA
GTGCAGCGAACTCCTTGAAGACCAGTCGCCCCAGCAGCACCATGGCAATG
ATGTCGGCAGCGATGAGCATGTGGAAGACATACTGCCATCCGGCGGTGGA
GATAAGGCCGGCAAGCAGTGGACCAACTGCCGCTCCGATTGACCCAGTAC
CATCGATAATGGCCGTCACCGTGGCCAGAGCATTGGCATTTCCCTCCAAG
GAGCTGTGCTGGCCCAGCTCTGCACTTACAGAGGTTGTAATCAGGGCATA
TGGTCCGTTCACAAAGATGCCGACCACAATCAAGAGCACTATGCTGATTG
TCATCGACAATGCACCATATTGTTGATACATCAGCAGAATGGGCGAGGCA
ACGAACAACATGCCTGTGCAGACGGTGGCCGACATTCCGCTCACATCTGA
TAGATAGCCCGCAGCTATTGCACCCAAAATACCACCCACATCGAAAAGAG
TGGACAAATCAGCGGACAGTTCTGGACCCAATGTGCTGGATTTTTGTATG
TAAAGTGGCAGCCAGTACATGAAGGTGTAGCTCACCAGCTTGGTAAAGAA
CAACACAGCGAAAACTTCTACCACCCCGGGTATGAATAAAGCATCGATCA
GACTGATGGGACGTCCGCGACCCCTTTGGCACCGCCTCTGGTTGAGATCG
TGGAAGGATTGGAATACGTTC
BO14078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10069-PA | 1587 | CG10069-RA | 1000..1584 | 603..19 | 2925 | 100 | Minus |
CG10069-PB | 1701 | CG10069-RB | 1114..1698 | 603..19 | 2925 | 100 | Minus |
CG10069-PC | 1587 | CG10069-RC | 1000..1584 | 603..19 | 2925 | 100 | Minus |
CG10069-PA | 1587 | CG10069-RA | 927..986 | 676..617 | 275 | 98.3 | Minus |
CG10069-PB | 1701 | CG10069-RB | 1041..1100 | 676..617 | 275 | 98.3 | Minus |
CG10069-PC | 1587 | CG10069-RC | 927..986 | 676..617 | 275 | 98.3 | Minus |
CG10069-PA | 1587 | CG10069-RA | 883..928 | 721..676 | 205 | 97.8 | Minus |
CG10069-PB | 1701 | CG10069-RB | 997..1042 | 721..676 | 205 | 97.8 | Minus |
CG10069-PC | 1587 | CG10069-RC | 883..928 | 721..676 | 205 | 97.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RD | 2281 | CG10069-RD | 1124..1825 | 721..19 | 3415 | 99.3 | Minus |
MFS16-RC | 2563 | CG10069-RC | 1406..2107 | 721..19 | 3415 | 99.3 | Minus |
MFS16-RB | 2399 | CG10069-RB | 1242..1943 | 721..19 | 3415 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21284855..21285223 | 387..19 | 1845 | 100 | Minus |
2R | 25286936 | 2R | 21284409..21284593 | 721..536 | 755 | 97.3 | Minus |
2R | 25286936 | 2R | 21284650..21284798 | 536..388 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:06:15 has no hits.
BO14078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:34 Download gff for
BO14078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-PA | 883..1587 | 18..721 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:43 Download gff for
BO14078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-PA | 883..1587 | 18..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:49:35 Download gff for
BO14078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 1242..1947 | 13..721 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:07 Download gff for
BO14078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 1242..1947 | 13..721 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:07 Download gff for
BO14078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21284409..21284592 | 537..721 | 97 | -> | Minus |
2R | 21284650..21284798 | 388..536 | 100 | -> | Minus |
2R | 21284855..21285227 | 13..387 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:49:35 Download gff for
BO14078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17171914..17172097 | 537..721 | 97 | -> | Minus |
arm_2R | 17172155..17172303 | 388..536 | 100 | -> | Minus |
arm_2R | 17172360..17172732 | 13..387 | 99 | | Minus |
BO14078.5prime Sequence
761 bp (617 high quality bases) assembled on 2006-05-29
> BO14078.5prime
GAAGTTATCAGTCGACATGAGGACAAGTGAACAGAAAAGTAGCTGGCATT
ACTCGCAACCGAAACGGATTCGGGAACCCAGCCACCTGGACGAGCAGCAC
TTGCACCTCGCCCACTGTCCGCGCCGGTCGATGAGAGCTTCACTGGGATT
GGGCAGAACGCGAAAGATGAGCAATAACTACAACGACGTGCCATTCGGCA
TCCGGGCTGTGCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCC
CGCAGAGATTTGCTCTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGC
CTACGCCTGCTATCACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGG
TGCTGCAAGGAAACTGTTCCACAGCGCTGGCTGCATCGGGTCAGGATTGT
GGATATGCGCCCTTTGATGTTCCCGATGCCACCACACTCTTTGGAATGCT
GGACTCGGCCTTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTT
TCGTGGCGGAACGCGTTTCCCTGCGATACTTCTTGTCCATGGGCATGATC
CTCACCGGAGTGTTCACTTACATGTTCGGCATTGCTCGCACCTCCAATAT
CCATAGTTTGTGGTATTTCATAATAGTGCAAATATTCGCTGGCATCTTCC
AGACGACCGGATGGCCAGGTGTAGTGGCCCTCGTGGGTCGTTGGTTTGGA
AAGTCGAAACGCGGGCTCATTTTTTGGATATGGAACAGTCATACGTCCAA
TTGGAAACATT
BO14078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10069-PB | 1701 | CG10069-RB | 1..731 | 17..747 | 3605 | 99.7 | Plus |
CG10069-PA | 1587 | CG10069-RA | 1..617 | 131..747 | 3035 | 99.6 | Plus |
CG10069-PC | 1587 | CG10069-RC | 1..617 | 131..747 | 3035 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RB | 2399 | CG10069-RB | 246..989 | 17..761 | 3655 | 99.5 | Plus |
MFS16-RD | 2281 | CG10069-RD | 150..871 | 39..761 | 3545 | 99.4 | Plus |
MFS16-RC | 2563 | CG10069-RC | 432..1153 | 39..761 | 3545 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21283542..21283886 | 416..761 | 1635 | 98.8 | Plus |
2R | 25286936 | 2R | 21282987..21283212 | 39..264 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 21283331..21283482 | 265..416 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:11:52 has no hits.
BO14078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:35 Download gff for
BO14078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-PB | 1..744 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:44 Download gff for
BO14078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-PB | 1..744 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:49 Download gff for
BO14078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 246..989 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:47 Download gff for
BO14078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 246..989 | 17..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:47 Download gff for
BO14078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21282543..21282564 | 17..38 | 100 | -> | Plus |
2R | 21282987..21283212 | 39..264 | 100 | -> | Plus |
2R | 21283331..21283482 | 265..416 | 100 | -> | Plus |
2R | 21283543..21283886 | 417..761 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:49 Download gff for
BO14078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17170048..17170069 | 17..38 | 100 | -> | Plus |
arm_2R | 17170492..17170717 | 39..264 | 100 | -> | Plus |
arm_2R | 17170836..17170987 | 265..416 | 100 | -> | Plus |
arm_2R | 17171048..17171391 | 417..761 | 98 | | Plus |
BO14078.complete Sequence
1732 bp assembled on 2008-08-14
GenBank Submission: KX799558
> BO14078.complete
GAAGTTATCAGTCGACATGAGGACAAGTGAACAGAAAAGTAGCTGGCATT
ACTCGCAACCGAAACGGATTCGGGAACCCAGCCACCTGGACGAGCAGCAC
TTGCACCTCGCCCACTGTCCGCGCCGGTCGATGAGAGCTTCACTGGGATT
GGGCAGAACGCGAAAGATGAGCAATAACTACAACGACGTGCCATTCGGCA
TCCGGGCTGTGCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCC
CGCAGAGATTTGCTCTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGC
CTACGCCTGCTATCACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGG
TGCTGCAAGGAAACTGTTCCACAGCGCTGGCTGCATCGGGTCAGGATTGT
GGATATGCGCCCTTTGATGTTCCCGATGCCACCACACTCTTTGGAATGCT
GGACTCGGCCTTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTT
TCGTGGCGGAACGCGTTTCCCTGCGATACTTCTTGTCCATGGGCATGATC
CTCACCGGAGTGTTCACTTACATGTTCGGCATTGCTCGCACCTCCAATAT
CCATAGTTTGTGGTATTTCATAATAGTGCAAATATTCGCTGGCATCTTCC
AGACGACCGGATGGCCAGGTGTAGTGGCCCTCGTGGGTCGTTGGTTTGGA
AAGTCGAAACGCGGGCTCATTTTTGGTATATGGAACAGTCATACGTCTAT
TGGAAACATTCTTGGCACGCTGATAGCGGCGCATTATGTGGAATCCGATT
GGGCGCTGTCGTTTGTGGTACCCGGCATTATCATTGCAGCCGTTGGATTT
TTACTCTTCCTTTTCCTAGTGGATCAGCCGGAGATTGTGGGCTGTTATCC
ACAAGCCGGACAGCATGAGCGTCGCGTGGCCAACGAGTCTGATGTGGAAC
AGGACGACGAGGAGCAGGTGCGCCATAACGATGCGGAAATCAACTATAGA
TCTGCTCCCACCGAACGTACTCCAATCCTTCCACGATCTCAACCAGAGGC
GGTGCCAAGGGGTCGCGGACGTCCCATCAGTCTGATCGATGCTTTATTCA
TACCCGGTGTGGTAGAGTTTTCGCTGTGTTTGTTCTTTACCAAGCTGGTG
AGCTACACCTTCATGTACTGGCTGCCACTTTACATACAAAAATCCAGCAC
ATTGGGTCCAGAACTGTCCGCTGATTTGTCCACTCTTTTCGATGTGGGTG
GTATTTTGGGTGCAATAGCTGCGGGCTATCTATCAGATGTGAGCGGAATG
TCGGCCACCGTCTGCACAGGCATGTTGTTCGTTGCCTCGCCCATTCTGCT
GATGTATCAACAATATGGTGCATTGTCGATGACAATCAGCATAGTGCTCT
TGATTGTGGTCGGCATCTTTGTGAACGGACCATATGCCCTGATTACAACC
TCTGTAAGTGCAGAGCTGGGCCAGCACAGCTCCTTGGAGGGAAATGCCAA
TGCTCTGGCCACGGTGACGGCCATTATCGATGGTACTGGGTCAATCGGAG
CGGCAGTTGGTCCACTGCTTGCCGGCCTTATCTCCACCGCCGGATGGCAG
TATGTCTTCCACATGCTCATCGCTGCCGACATCATTGCCATGGTGCTGCT
GGGGCGACTGGTCTTCAAGGAGTTCGCTGCACTGCGTCGTGCATCGCATC
GTATTCGGATTGAAGCAAGCTTTCTAGACCAT
BO14078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RB | 1701 | CG10069-PB | 1..1698 | 17..1714 | 8490 | 100 | Plus |
MFS16-RD | 1587 | CG10069-PD | 1..1584 | 131..1714 | 7920 | 100 | Plus |
MFS16-RC | 1587 | CG10069-PC | 1..1584 | 131..1714 | 7920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RB | 2399 | CG10069-RB | 246..1943 | 17..1714 | 8490 | 100 | Plus |
MFS16-RD | 2281 | CG10069-RD | 150..1825 | 39..1714 | 8380 | 100 | Plus |
MFS16-RC | 2563 | CG10069-RC | 432..2107 | 39..1714 | 8380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21283542..21284112 | 416..986 | 2855 | 100 | Plus |
2R | 25286936 | 2R | 21284855..21285223 | 1346..1714 | 1845 | 100 | Plus |
2R | 25286936 | 2R | 21282987..21283212 | 39..264 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 21284381..21284593 | 985..1197 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 21283331..21283482 | 265..416 | 760 | 100 | Plus |
2R | 25286936 | 2R | 21284650..21284798 | 1197..1345 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:39:25 has no hits.
BO14078.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:32 Download gff for
BO14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-RB | 167..1868 | 17..1720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:22 Download gff for
BO14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 246..1943 | 17..1716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:59 Download gff for
BO14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-RB | 167..1864 | 17..1716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:16 Download gff for
BO14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 246..1943 | 17..1716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:16 Download gff for
BO14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21284855..21285223 | 1346..1716 | 99 | | Plus |
2R | 21282543..21282564 | 17..38 | 100 | -> | Plus |
2R | 21282987..21283212 | 39..264 | 100 | -> | Plus |
2R | 21283331..21283482 | 265..416 | 100 | -> | Plus |
2R | 21283543..21284111 | 417..985 | 100 | -> | Plus |
2R | 21284382..21284592 | 986..1196 | 100 | -> | Plus |
2R | 21284650..21284798 | 1197..1345 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:22 Download gff for
BO14078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17170492..17170717 | 39..264 | 100 | -> | Plus |
arm_2R | 17170836..17170987 | 265..416 | 100 | -> | Plus |
arm_2R | 17170048..17170069 | 17..38 | 100 | -> | Plus |
arm_2R | 17171048..17171616 | 417..985 | 100 | -> | Plus |
arm_2R | 17171887..17172097 | 986..1196 | 100 | -> | Plus |
arm_2R | 17172155..17172303 | 1197..1345 | 100 | -> | Plus |
arm_2R | 17172360..17172728 | 1346..1716 | 99 | | Plus |
BO14078.pep Sequence
Translation from 16 to 1732
> BO14078.pep
MRTSEQKSSWHYSQPKRIREPSHLDEQHLHLAHCPRRSMRASLGLGRTRK
MSNNYNDVPFGIRAVQRLSRQCCTRFHARRDLLYKMSVFVLTFLAYACYH
MCRKPISVVKSVLQGNCSTALAASGQDCGYAPFDVPDATTLFGMLDSAFL
FSYAIAMFASGFVAERVSLRYFLSMGMILTGVFTYMFGIARTSNIHSLWY
FIIVQIFAGIFQTTGWPGVVALVGRWFGKSKRGLIFGIWNSHTSIGNILG
TLIAAHYVESDWALSFVVPGIIIAAVGFLLFLFLVDQPEIVGCYPQAGQH
ERRVANESDVEQDDEEQVRHNDAEINYRSAPTERTPILPRSQPEAVPRGR
GRPISLIDALFIPGVVEFSLCLFFTKLVSYTFMYWLPLYIQKSSTLGPEL
SADLSTLFDVGGILGAIAAGYLSDVSGMSATVCTGMLFVASPILLMYQQY
GALSMTISIVLLIVVGIFVNGPYALITTSVSAELGQHSSLEGNANALATV
TAIIDGTGSIGAAVGPLLAGLISTAGWQYVFHMLIAADIIAMVLLGRLVF
KEFAALRRASHRIRIEASFLDH
BO14078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-PB | 566 | CG10069-PB | 1..566 | 1..566 | 2915 | 100 | Plus |
MFS16-PD | 528 | CG10069-PD | 1..528 | 39..566 | 2702 | 100 | Plus |
MFS16-PC | 528 | CG10069-PC | 1..528 | 39..566 | 2702 | 100 | Plus |
MFS16-PA | 528 | CG10069-PA | 1..528 | 39..566 | 2702 | 100 | Plus |