Clone BO14082 Report

Search the DGRC for BO14082

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG2010-RA
Protein status:BO14082.pep: Imported from assembly
Sequenced Size:1579

Clone Sequence Records

BO14082.3prime Sequence

619 bp (589 high quality bases) assembled on 2006-05-29

> BO14082.3prime
ATGGTCTAGAAAGCTTGCGTTGAAAATCAAATCGTTGTAGTTGCGGAGCA
GGTGATAGGGAGACACACGGCAGCAGGTGGTGGTGCGCACCACGGTGATG
CGATCGGCACGCTCAAAGTTGGCCTTGACCGTCTCATAGTAGCGACCATC
GCTGAGCACCATGCAGCGCAGCTTGAGGCACTTGACGCGCAGAATATCGA
TGGCCTTCTGGCTCTTGTCGGAGAAGCGCAGGTTGTCCGGATCCCAGCGC
AGCTCCAGCCGCTCCAAGTTGCCGCAATTCGAGGCGATGGTGTCCATCAG
CTGGTCCACGTGGATGTTGACGCCCAGCTTCTCTGCGGTGCCCATAACAA
TGATCTTGCAGTTGCCCAGCAGGGGCAGGATGCTCATCCACAGCTGGTCG
GTGATGTGGGGCATGCCCGAGAGACAGCAGGCGCTCAGCTGATGACCCTG
GCGCTGTATAAACTTAAGCAGGCCCTCATCCGAGATGTTGTCCGAGGAGT
CCAAGTCCAGGGAAATGAGCGACCTGGTGGTGCCCGATTCCATCCACTGC
TTGAGAACGCTGTCGTTGAAGCCATTGATCTGGCCGGCTGAGAGGAACTT
TGAGGCTGGGGATCCTGCT

BO14082.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-PB 1536 CG2010-RB 952..1533 600..19 2910 100 Minus
CG2010-PA 1548 CG2010-RA 964..1545 600..19 2910 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-RC 2132 CG2010-RC 1305..1904 619..19 2980 99.8 Minus
CG2010-RA 1910 CG2010-RA 1083..1682 619..19 2980 99.8 Minus
CG2010-RB 2255 CG2010-RB 1428..2027 619..19 2980 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29498294..29498503 361..152 1035 99.5 Minus
3R 32079331 3R 29498062..29498232 525..355 855 100 Minus
3R 32079331 3R 29498560..29498695 154..19 680 100 Minus
3R 32079331 3R 29497911..29498007 619..522 440 99 Minus
Blast to na_te.dros performed 2015-01-31 11:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2601..2665 291..356 120 66.7 Plus

BO14082.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:39 Download gff for BO14082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2010-PA 946..1548 16..619 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:50 Download gff for BO14082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2010-PA 946..1548 16..619 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:48:47 Download gff for BO14082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1428..2032 13..619 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:55:29 Download gff for BO14082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1428..2032 13..619 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:55:29 Download gff for BO14082.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29497911..29498005 524..619 98 -> Minus
3R 29498064..29498231 356..523 100 -> Minus
3R 29498300..29498503 152..355 100 -> Minus
3R 29498563..29498700 13..151 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:48:47 Download gff for BO14082.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25323786..25323953 356..523 100 -> Minus
arm_3R 25324022..25324225 152..355 100 -> Minus
arm_3R 25324285..25324422 13..151 97   Minus
arm_3R 25323633..25323727 524..619 98 -> Minus

BO14082.complete Sequence

1579 bp assembled on 2010-06-24

GenBank Submission: KX798299

> BO14082.complete
GAAGTTATCAGTCGACATGGATATATCCACCGATATCTGGGGTCAGCTGG
CCGTGGAGGCATCGCAGGTCTACCTCTCCGACGGCACAGTTCGCAGTCCC
TTCGCCGATACGACCATTGAGAAGCTGCCGGACAAGGTGCTGCTGCACAT
CTTCTCGTATCTGTCGCACCGCGAGATCTGCCGCCTGGCCAGGATTTGCC
GACGATGGCGGCAGATTGCATACGACACGCGGCTGTGGAAGAACGTGAGC
CTGCGACCGGAGGTCTCCGGACTGCACGTGGGCTCGCTGGAGATGCTGCT
GCAGCTGATCTCGGTGAGATTCGGACCGACTCTGCGCTACATCGAGCTGC
CCATCGAGCTGATCACGCACACGGTGCTCCACGAACTGTCCGCCAAGTGC
CCCAATTTGACCCACATGCTGCTGGACTTCTCCACAGCCATGCAGCTGCA
CGACTTCAGCGAGATGCAGGCCTTTCCCACCAAGCTGCGCTACATGTGCG
TCTGCCTCTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAAATCTAC
AACTTCATCAACGGCCTGGAGGTGCTGCATCTAATTGGCACGTACGAGAA
GTGCGAGGAGGAGGAGGAGGAGATCTACGAGGTGATCAACGTGCACAAGC
TCAAGTCGGCCACGCCCAATTTGCGTGTGATCAACCTGTACGGCATCAAC
TTCATCGATGACTCGCACATCGACGCCTTCAGCTCGAACTGCATCCAGCT
GGAGTGCCTGGCCGTCAACTTCTGCAACAAAGTGACCGGCTCCACCCTGA
AGACCCTGATCCAGCGTTCCAAGCGCCTCACCTGCCTGCTCATGAACGGC
ACCAGCCTGAAGTCGGAGTTCGTCATGCAGGCCGAGTGGGACAAGTGCGC
CCTGCAGGAGCTGGACATCACGGCCACCGATCTTTCGACCGAATGCCTCG
TGGACATGCTGAGCAGGATCCCCAGCCTCAAGTTCCTCTCAGCCGGCCAG
ATCAATGGCTTCAACGACAGCGTTCTCAAGCAGTGGATGGAATCGGGCAC
CACCAGGTCGCTCATTTCCCTGGACTTGGACTCCTCGGACAACATCTCGG
ATGAGGGCCTGCTTAAGTTTATACAGCGCCAGGGTCATCAGCTGAGCGCC
TGCTGTCTCTCGGGCATGCCCCACATCACCGACCAGCTGTGGATGAGCAT
CCTGCCCCTGCTGGGCAACTGCAAGATCATTGTTATGGGCACCGCAGAGA
AGCTGGGCGTCAACATCCACGTGGACCAGCTGATGGACACCATCGCCTCG
AATTGCGGCAACTTGGAGCGGCTGGAGCTGCGCTGGGATCCGGACAACCT
GCGCTTCTCCGACAAGAGCCAGAAGGCCATCGATATTCTGCGCGTCAAGT
GCCTCAAGCTGCGCTGCATGGTGCTCAGCGATGGTCGCTACTATGAGACG
GTCAAGGCCAACTTTGAGCGTGCCGATCGCATCACCGTGGTGCGCACCAC
CACCTGCTGCCGTGTGTCTCCCTATCACCTGCTCCGCAACTACAACGATT
TGATTTTCAACGCAAGCTTTCTAGACCAT

BO14082.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-RA 1548 CG2010-PA 1..1545 17..1561 7725 100 Plus
CG2010-RC 1536 CG2010-PC 84..1533 112..1561 7250 100 Plus
CG2010-RB 1536 CG2010-PB 84..1533 112..1561 7250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-RA 1910 CG2010-RA 137..1682 16..1561 7730 100 Plus
CG2010-RC 2132 CG2010-RC 455..1904 112..1561 7250 100 Plus
CG2010-RB 2255 CG2010-RB 578..2027 112..1561 7250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29497385..29498007 436..1058 3115 100 Plus
3R 32079331 3R 29496999..29497324 112..437 1630 100 Plus
3R 32079331 3R 29498294..29498503 1219..1428 1035 99.5 Plus
3R 32079331 3R 29498062..29498232 1055..1225 855 100 Plus
3R 32079331 3R 29498560..29498695 1426..1561 680 100 Plus
3R 32079331 3R 29496677..29496773 16..112 485 100 Plus
Blast to na_te.dros performed 2014-11-28 07:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2601..2665 1289..1224 120 66.7 Minus

BO14082.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:30 Download gff for BO14082.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 133..1677 17..1563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:42 Download gff for BO14082.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 138..1682 17..1563 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:27 Download gff for BO14082.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 138..1682 17..1563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:27 Download gff for BO14082.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29498563..29498695 1429..1563 98   Plus
3R 29498064..29498231 1057..1224 100 -> Plus
3R 29498300..29498503 1225..1428 100 -> Plus
3R 29496678..29496773 17..112 100 -> Plus
3R 29497000..29497324 113..437 100 -> Plus
3R 29497387..29498005 438..1056 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:42 Download gff for BO14082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25322400..25322495 17..112 100 -> Plus
arm_3R 25322722..25323046 113..437 100 -> Plus
arm_3R 25323109..25323727 438..1056 100 -> Plus
arm_3R 25323786..25323953 1057..1224 100 -> Plus
arm_3R 25324022..25324225 1225..1428 100 -> Plus
arm_3R 25324285..25324417 1429..1563 98   Plus

BO14082.pep Sequence

Translation from 16 to 1579

> BO14082.pep
MDISTDIWGQLAVEASQVYLSDGTVRSPFADTTIEKLPDKVLLHIFSYLS
HREICRLARICRRWRQIAYDTRLWKNVSLRPEVSGLHVGSLEMLLQLISV
RFGPTLRYIELPIELITHTVLHELSAKCPNLTHMLLDFSTAMQLHDFSEM
QAFPTKLRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYEKCEEEE
EEIYEVINVHKLKSATPNLRVINLYGINFIDDSHIDAFSSNCIQLECLAV
NFCNKVTGSTLKTLIQRSKRLTCLLMNGTSLKSEFVMQAEWDKCALQELD
ITATDLSTECLVDMLSRIPSLKFLSAGQINGFNDSVLKQWMESGTTRSLI
SLDLDSSDNISDEGLLKFIQRQGHQLSACCLSGMPHITDQLWMSILPLLG
NCKIIVMGTAEKLGVNIHVDQLMDTIASNCGNLERLELRWDPDNLRFSDK
SQKAIDILRVKCLKLRCMVLSDGRYYETVKANFERADRITVVRTTTCCRV
SPYHLLRNYNDLIFNASFLDH

BO14082.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-PA 515 CG2010-PA 1..515 1..515 2685 100 Plus
CG2010-PC 511 CG2010-PC 2..511 6..515 2529 95.5 Plus
CG2010-PB 511 CG2010-PB 2..511 6..515 2529 95.5 Plus