Clone Sequence Records
BO14084.5prime Sequence
428 bp (427 high quality bases) assembled on 2006-05-29
> BO14084.5prime
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGATTTTCCCATACTTCCGCCACCGCCGAACGCGAATGAC
AACTACAATCAATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCA
GAAGAAGCTGCAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTA
TGCGTGTGAACGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAA
CTGGGCGAGCGTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCA
GCAGGCCGGCAAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGA
TGATCATTCTGGGCGTGATAGCCGTTGTGCTGCTCATCATCGTTCTGGTG
TCGCTTTTCAATGCAAGCTTTCTAGACC
BO14084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12210-PB | 399 | Syb-RB | 1..396 | 17..412 | 1980 | 100 | Plus |
CG12210-PA | 390 | Syb-RA | 48..317 | 133..402 | 1350 | 100 | Plus |
CG12210-PA | 390 | Syb-RA | 1..47 | 17..63 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RB | 1139 | CG12210-RB | 147..542 | 17..412 | 1980 | 100 | Plus |
Syb-RC | 921 | CG12210-RC | 147..532 | 17..402 | 1930 | 100 | Plus |
Syb-RD | 1070 | CG12210-RD | 194..473 | 133..412 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251213 | 398..64 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 1635328..1635439 | 319..208 | 245 | 81.2 | Minus |
2R | 25286936 | 2R | 10251928..10251974 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 19:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 3502..3540 | 424..386 | 105 | 74.4 | Minus |
BO14084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:41 Download gff for
BO14084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-PB | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:53 Download gff for
BO14084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12210-PB | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:12:10 Download gff for
BO14084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 142..542 | 12..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:15:14 Download gff for
BO14084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 142..542 | 12..412 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:15:14 Download gff for
BO14084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10250879..10251213 | 64..398 | 100 | <- | Minus |
2R | 10251928..10251979 | 12..63 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:12:10 Download gff for
BO14084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6138384..6138718 | 64..398 | 100 | <- | Minus |
arm_2R | 6139433..6139484 | 12..63 | 96 | | Minus |
BO14084.3prime Sequence
428 bp (427 high quality bases) assembled on 2006-05-29
> BO14084.3prime
ATGGTCTAGAAAGCTTGCATTGAAAAGCGACACCAGAACGATGATGAGCA
GCACAACGGCTATCACGCCCAGAATGATCATCATCTTCATGTTGGCCCAC
CATTGCTTGCGCTTCAGCTTGCCGGCCTGCTGCTCGAACTGGGATGCTCC
CTGCTCCAGCTGATCCGCACGCTCGCCCAGTTCCGATAGCTTCTGGTCCC
GCTCCAGGACCTTCTCCACGTTCACACGCATAATCCCGACCACCTCGTCC
ACCTTGGCTTGGGTCTGCTGCAGCTTCTTCTGGGCTGCATTGTTGTTCCT
GATTTGATGGTCACCGAATTGATTGTAGTTGTCATTCGCGTTCGGCGGTG
GCGGAAGTATGGGAAAATCGTTGTTGTTGGATCCCGAGGGGGAGGGGGCT
TCGTTGTTCTCCATGTCGACTGATAACT
BO14084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12210-PB | 399 | Syb-RB | 1..396 | 414..19 | 1980 | 100 | Minus |
CG12210-PA | 390 | Syb-RA | 48..317 | 298..29 | 1350 | 100 | Minus |
CG12210-PA | 390 | Syb-RA | 1..47 | 414..368 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RB | 1139 | CG12210-RB | 147..542 | 414..19 | 1980 | 100 | Minus |
Syb-RC | 921 | CG12210-RC | 147..532 | 414..29 | 1930 | 100 | Minus |
Syb-RD | 1070 | CG12210-RD | 194..473 | 298..19 | 1400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251213 | 33..367 | 1675 | 100 | Plus |
3L | 28110227 | 3L | 1635328..1635439 | 112..223 | 245 | 81.2 | Plus |
2R | 25286936 | 2R | 10251928..10251974 | 368..414 | 235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 06:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 3502..3540 | 7..45 | 105 | 74.4 | Plus |
BO14084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:40 Download gff for
BO14084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-PB | 1..399 | 16..414 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:51 Download gff for
BO14084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12210-PB | 1..399 | 16..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:24:38 Download gff for
BO14084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 142..542 | 19..419 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:40:21 Download gff for
BO14084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 142..542 | 19..419 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:40:21 Download gff for
BO14084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10250879..10251213 | 33..367 | 100 | <- | Plus |
2R | 10251928..10251979 | 368..419 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:24:38 Download gff for
BO14084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6138384..6138718 | 33..367 | 100 | <- | Plus |
arm_2R | 6139433..6139484 | 368..419 | 96 | | Plus |
BO14084.complete Sequence
430 bp assembled on 2006-10-11
GenBank Submission: FJ633019
> BO14084.complete
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGATTTTCCCATACTTCCGCCACCGCCGAACGCGAATGAC
AACTACAATCAATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCA
GAAGAAGCTGCAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTA
TGCGTGTGAACGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAA
CTGGGCGAGCGTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCA
GCAGGCCGGCAAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGA
TGATCATTCTGGGCGTGATAGCCGTTGTGCTGCTCATCATCGTTCTGGTG
TCGCTTTTCAATGCAAGCTTTCTAGACCAT
BO14084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RB | 399 | CG12210-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
Syb-RC | 459 | CG12210-PC | 1..386 | 17..402 | 1930 | 100 | Plus |
Syb-RD | 330 | CG12210-PD | 48..327 | 133..412 | 1400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RB | 1139 | CG12210-RB | 147..542 | 17..412 | 1980 | 100 | Plus |
Syb-RC | 921 | CG12210-RC | 147..532 | 17..402 | 1930 | 100 | Plus |
Syb-RD | 1070 | CG12210-RD | 194..473 | 133..412 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251213 | 398..64 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 1635328..1635439 | 319..208 | 245 | 81.2 | Minus |
2R | 25286936 | 2R | 10251928..10251974 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 3502..3540 | 424..386 | 105 | 74.4 | Minus |
BO14084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:41 Download gff for
BO14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:37 Download gff for
BO14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 134..534 | 12..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:21 Download gff for
BO14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 147..542 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:43 Download gff for
BO14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 134..534 | 12..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:16 Download gff for
BO14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RB | 147..542 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:16 Download gff for
BO14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10250879..10251213 | 64..398 | 100 | <- | Minus |
2R | 10251928..10251974 | 17..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:21 Download gff for
BO14084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6138384..6138718 | 64..398 | 100 | <- | Minus |
arm_2R | 6139433..6139479 | 17..63 | 100 | | Minus |
BO14084.pep Sequence
Translation from 16 to 430
> BO14084.pep
MENNEAPSPSGSNNNDFPILPPPPNANDNYNQFGDHQIRNNNAAQKKLQQ
TQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQFEQQAGKL
KRKQWWANMKMMIILGVIAVVLLIIVLVSLFNASFLDH
BO14084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-PB | 132 | CG12210-PB | 1..132 | 1..132 | 676 | 100 | Plus |
Syb-PC | 152 | CG12210-PC | 1..134 | 1..134 | 665 | 97 | Plus |
Syb-PD | 109 | CG12210-PD | 1..109 | 1..132 | 503 | 81.8 | Plus |
Syb-PE | 129 | CG12210-PE | 1..111 | 1..134 | 492 | 79.1 | Plus |
Syb-PA | 129 | CG12210-PA | 1..111 | 1..134 | 492 | 79.1 | Plus |