Clone BO14084 Report

Search the DGRC for BO14084

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptSyb-RB
Protein status:BO14084.pep: validated full length
Sequenced Size:430

Clone Sequence Records

BO14084.5prime Sequence

428 bp (427 high quality bases) assembled on 2006-05-29

> BO14084.5prime
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGATTTTCCCATACTTCCGCCACCGCCGAACGCGAATGAC
AACTACAATCAATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCA
GAAGAAGCTGCAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTA
TGCGTGTGAACGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAA
CTGGGCGAGCGTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCA
GCAGGCCGGCAAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGA
TGATCATTCTGGGCGTGATAGCCGTTGTGCTGCTCATCATCGTTCTGGTG
TCGCTTTTCAATGCAAGCTTTCTAGACC

BO14084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12210-PB 399 Syb-RB 1..396 17..412 1980 100 Plus
CG12210-PA 390 Syb-RA 48..317 133..402 1350 100 Plus
CG12210-PA 390 Syb-RA 1..47 17..63 235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RB 1139 CG12210-RB 147..542 17..412 1980 100 Plus
Syb-RC 921 CG12210-RC 147..532 17..402 1930 100 Plus
Syb-RD 1070 CG12210-RD 194..473 133..412 1400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251213 398..64 1675 100 Minus
3L 28110227 3L 1635328..1635439 319..208 245 81.2 Minus
2R 25286936 2R 10251928..10251974 63..17 235 100 Minus
Blast to na_te.dros performed 2015-02-12 19:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 3502..3540 424..386 105 74.4 Minus

BO14084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:41 Download gff for BO14084.5prime
Subject Subject Range Query Range Percent Splice Strand
Syb-PB 1..399 17..415 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:53 Download gff for BO14084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12210-PB 1..399 17..415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:12:10 Download gff for BO14084.5prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 142..542 12..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:15:14 Download gff for BO14084.5prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 142..542 12..412 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:15:14 Download gff for BO14084.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10250879..10251213 64..398 100 <- Minus
2R 10251928..10251979 12..63 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:12:10 Download gff for BO14084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6138384..6138718 64..398 100 <- Minus
arm_2R 6139433..6139484 12..63 96   Minus

BO14084.3prime Sequence

428 bp (427 high quality bases) assembled on 2006-05-29

> BO14084.3prime
ATGGTCTAGAAAGCTTGCATTGAAAAGCGACACCAGAACGATGATGAGCA
GCACAACGGCTATCACGCCCAGAATGATCATCATCTTCATGTTGGCCCAC
CATTGCTTGCGCTTCAGCTTGCCGGCCTGCTGCTCGAACTGGGATGCTCC
CTGCTCCAGCTGATCCGCACGCTCGCCCAGTTCCGATAGCTTCTGGTCCC
GCTCCAGGACCTTCTCCACGTTCACACGCATAATCCCGACCACCTCGTCC
ACCTTGGCTTGGGTCTGCTGCAGCTTCTTCTGGGCTGCATTGTTGTTCCT
GATTTGATGGTCACCGAATTGATTGTAGTTGTCATTCGCGTTCGGCGGTG
GCGGAAGTATGGGAAAATCGTTGTTGTTGGATCCCGAGGGGGAGGGGGCT
TCGTTGTTCTCCATGTCGACTGATAACT

BO14084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12210-PB 399 Syb-RB 1..396 414..19 1980 100 Minus
CG12210-PA 390 Syb-RA 48..317 298..29 1350 100 Minus
CG12210-PA 390 Syb-RA 1..47 414..368 235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RB 1139 CG12210-RB 147..542 414..19 1980 100 Minus
Syb-RC 921 CG12210-RC 147..532 414..29 1930 100 Minus
Syb-RD 1070 CG12210-RD 194..473 298..19 1400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251213 33..367 1675 100 Plus
3L 28110227 3L 1635328..1635439 112..223 245 81.2 Plus
2R 25286936 2R 10251928..10251974 368..414 235 100 Plus
Blast to na_te.dros performed 2015-02-03 06:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 3502..3540 7..45 105 74.4 Plus

BO14084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:40 Download gff for BO14084.3prime
Subject Subject Range Query Range Percent Splice Strand
Syb-PB 1..399 16..414 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:51 Download gff for BO14084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12210-PB 1..399 16..414 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:24:38 Download gff for BO14084.3prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 142..542 19..419 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:40:21 Download gff for BO14084.3prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 142..542 19..419 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:40:21 Download gff for BO14084.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10250879..10251213 33..367 100 <- Plus
2R 10251928..10251979 368..419 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:24:38 Download gff for BO14084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6138384..6138718 33..367 100 <- Plus
arm_2R 6139433..6139484 368..419 96   Plus

BO14084.complete Sequence

430 bp assembled on 2006-10-11

GenBank Submission: FJ633019

> BO14084.complete
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGATTTTCCCATACTTCCGCCACCGCCGAACGCGAATGAC
AACTACAATCAATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCA
GAAGAAGCTGCAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTA
TGCGTGTGAACGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAA
CTGGGCGAGCGTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCA
GCAGGCCGGCAAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGA
TGATCATTCTGGGCGTGATAGCCGTTGTGCTGCTCATCATCGTTCTGGTG
TCGCTTTTCAATGCAAGCTTTCTAGACCAT

BO14084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RB 399 CG12210-PB 1..396 17..412 1980 100 Plus
Syb-RC 459 CG12210-PC 1..386 17..402 1930 100 Plus
Syb-RD 330 CG12210-PD 48..327 133..412 1400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RB 1139 CG12210-RB 147..542 17..412 1980 100 Plus
Syb-RC 921 CG12210-RC 147..532 17..402 1930 100 Plus
Syb-RD 1070 CG12210-RD 194..473 133..412 1400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251213 398..64 1675 100 Minus
3L 28110227 3L 1635328..1635439 319..208 245 81.2 Minus
2R 25286936 2R 10251928..10251974 63..17 235 100 Minus
Blast to na_te.dros performed 2014-11-27 20:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 3502..3540 424..386 105 74.4 Minus

BO14084.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:41 Download gff for BO14084.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 1..399 17..415 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:37 Download gff for BO14084.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 134..534 12..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:21 Download gff for BO14084.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 147..542 17..414 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:43 Download gff for BO14084.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 134..534 12..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:16 Download gff for BO14084.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RB 147..542 17..414 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:16 Download gff for BO14084.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10250879..10251213 64..398 100 <- Minus
2R 10251928..10251974 17..63 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:21 Download gff for BO14084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6138384..6138718 64..398 100 <- Minus
arm_2R 6139433..6139479 17..63 100   Minus

BO14084.pep Sequence

Translation from 16 to 430

> BO14084.pep
MENNEAPSPSGSNNNDFPILPPPPNANDNYNQFGDHQIRNNNAAQKKLQQ
TQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQFEQQAGKL
KRKQWWANMKMMIILGVIAVVLLIIVLVSLFNASFLDH

BO14084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-PB 132 CG12210-PB 1..132 1..132 676 100 Plus
Syb-PC 152 CG12210-PC 1..134 1..134 665 97 Plus
Syb-PD 109 CG12210-PD 1..109 1..132 503 81.8 Plus
Syb-PE 129 CG12210-PE 1..111 1..134 492 79.1 Plus
Syb-PA 129 CG12210-PA 1..111 1..134 492 79.1 Plus