Clone BO14085 Report

Search the DGRC for BO14085

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:85
Vector:pDNR-Dual
Associated Gene/Transcriptmas-RB
Protein status:BO14085.pep: Imported from assembly
Sequenced Size:3175

Clone Sequence Records

BO14085.3prime Sequence

654 bp (607 high quality bases) assembled on 2006-05-29

> BO14085.3prime
ATGGTCTAGAAAGCTTGCTAAGTTATTCACGCTGATGATCTGGTTGATCC
AGCCGATGAACGAGGACGTCTTCACATAGACGCCGGGCACATCCTGTCGC
CCGCAGCCGAATCCCCAGGAGACGAGGCCGGCCAGCTCGTAGAACCCATC
ATCTTGGCAAACTAGTGGACCACCTCCATCGCCCTGGCAGGCATCGTGTC
CCTCCTCTCCGCCGGCACAGAAACTGGAGGCGGGCAGGATGAAGATCTTC
TCCGTCACGGCGTTCACCTTCCGTATGCACTCCGTATCGCTCACAATGGG
AATCTCCGCCTCACGCACTCGCAGGGGAATGGGACCAGCTTCACCCATAT
ATCCGTATCCGGTCACCGTGCATCGCTTGCCCGCCGCATGGCTGACTCCT
CGTGCAGGAAGACACACCAAGCACACTCCATCTCGAAGCTCCGCTTGACC
ATGGAGCTTCAGGAGAGCAATATCGTTGTCCAGGGTCTGGCTATTGTGGT
TGTGATGGATGTAGGTGGTGGCCACGCGCAATGTCTGTGCTCCTGGACTG
CCGTATTTCCGGGTTAGATCGTAATCACCAACCCGCACGTAGATAGCATC
TCCGGAACGAACAATGTTGGTCACACAATGGGCTGCGGTAAGAACCCACT
GGGT

BO14085.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15002-PB 3144 mas-RB 2506..3141 654..19 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
mas-RC 3654 CG15002-RC 2687..3322 654..19 3180 100 Minus
mas-RB 3657 CG15002-RB 2690..3325 654..19 3180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4161998..4162320 19..341 1615 100 Plus
3L 28110227 3L 4162377..4162658 339..620 1395 99.6 Plus
3L 28110227 3L 4162713..4162750 617..654 190 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:32:14 has no hits.

BO14085.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:42 Download gff for BO14085.3prime
Subject Subject Range Query Range Percent Splice Strand
mas-PB 2506..3144 18..654 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:54 Download gff for BO14085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15002-PB 2506..3144 18..654 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:18:11 Download gff for BO14085.3prime
Subject Subject Range Query Range Percent Splice Strand
mas-RB 2690..3325 19..654 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:02:13 Download gff for BO14085.3prime
Subject Subject Range Query Range Percent Splice Strand
mas-RB 2690..3325 19..654 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:02:13 Download gff for BO14085.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4161998..4162317 19..338 100 <- Plus
3L 4162377..4162654 339..616 100 <- Plus
3L 4162713..4162750 617..654 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:18:11 Download gff for BO14085.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4161998..4162317 19..338 100 <- Plus
arm_3L 4162377..4162654 339..616 100 <- Plus
arm_3L 4162713..4162750 617..654 100   Plus

BO14085.5prime Sequence

697 bp (619 high quality bases) assembled on 2006-05-29

> BO14085.5prime
GAAGTTATCAGTCGACATGCCAAGACATTCGAGCACAATGAGCCGCCTTG
TTCTGCCCCTGATCTTCAGCATTTTGCTGGTCAGTAAGCCATCGCCATCA
CAGGCTCAGGATGAATCCCTGGCTGGCAGTTTCCTATCAGGTCTTTTGGA
CACCATAACGAGCACCGCAGACTCCAAGGATTGCCCTGGAGTATGTGTCC
ACACTTTGGCAACTTTAATTTGCTACGAAGTTCTAGACGATGTGGCTTGT
CCTTCGCCCAGCATGAAATGCTGCATAGAAAATGCTCCAGCCGGCAAGAA
TGCCACTGCTGTGAGAGCAACCACAACGCCTAAAACCACAACCACTGCTA
GCACCACTACCACCCAGAGAACCACCACCACGGTGGCCACTACTAGCACC
ACAAAGAGAACCACCACAACGAGCACCACTCCAAAACCAAAACCAAAGCC
ACAGACCAAGCGACCTGCCACTAGCTCCACCACAAAAGCCACTGTGGCCA
CCACAAAGAAACCGAGCACCACCAAGAAAGTGGCTACGGCCAAACCCAAG
GACAAGGAGGAGGCCACCAAGGCCGATGATGCAAACAAAGACTGCACTGG
AGTTTGCGTGGCCGATCGCATAGCGGAGTACTGTGAGGCCTATTTGACCA
GCGATGGACTGTGCAAGGAAGGCACCAAGTGCTGCGTCTCCCTGGAT

BO14085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG15002-PB 3144 mas-RB 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
mas-RB 3657 CG15002-RB 185..865 17..697 3405 100 Plus
mas-RC 3654 CG15002-RC 185..862 17..697 3350 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4164885..4165183 587..289 1495 100 Minus
3L 28110227 3L 4165243..4165394 290..139 760 100 Minus
3L 28110227 3L 4165463..4165588 142..17 630 100 Minus
3L 28110227 3L 4164690..4164799 697..588 550 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:18:39 has no hits.

BO14085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:43 Download gff for BO14085.5prime
Subject Subject Range Query Range Percent Splice Strand
mas-PB 1..681 17..697 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:55 Download gff for BO14085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15002-PB 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:35:54 Download gff for BO14085.5prime
Subject Subject Range Query Range Percent Splice Strand
mas-RB 185..865 17..697 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:50 Download gff for BO14085.5prime
Subject Subject Range Query Range Percent Splice Strand
mas-RB 185..865 17..697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:50 Download gff for BO14085.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4165465..4165588 17..140 100   Minus
3L 4164690..4164799 588..697 100 <- Minus
3L 4164885..4165181 291..587 100 <- Minus
3L 4165243..4165392 141..290 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:35:54 Download gff for BO14085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4164690..4164799 588..697 100 <- Minus
arm_3L 4164885..4165181 291..587 100 <- Minus
arm_3L 4165243..4165392 141..290 100 <- Minus
arm_3L 4165465..4165588 17..140 100   Minus

BO14085.complete Sequence

3175 bp assembled on 2008-08-14

GenBank Submission: FJ633020

> BO14085.complete
GAAGTTATCAGTCGACATGCCAAGACATTCGAGCACAATGAGCCGCCTTG
TTCTGCCCCTGATCTTCAGCATTTTGCTGGTCAGTAAGCCATCGCCATCA
CAGGCTCAGGATGAATCCCTGGCTGGCAGTTTCCTATCAGGTCTTTTGGA
CACCATAACGAGCACCGCAGACTCCAAGGATTGCCCTGGAGTATGTGTCC
ACACTTTGGCAACTTTAATTTGCTACGAAGTTCTAGACGATGTGGCTTGT
CCTTCGCCCAGCATGAAATGCTGCATAGAAAATGCTCCAGCCGGCAAGAA
TGCCACTGCTGTGAGAGCAACCACAACGCCTAAAACCACAACCACTGCTA
GCACCACTACCACCCAGAGAACCACCACCACGGTGGCCACTACTAGCACC
ACAAAGAGAACCACCACAACGAGCACCACTCCAAAACCAAAACCAAAGCC
ACAGACCAAGCGACCTGCCACTAGCTCCACCACAAAAGCCACTGTGGCCA
CCACAAAGAAACCGAGCACCACCAAGAAAGTGGCTACGGCCAAACCCAAG
GACAAGGAGGAGGCCACCAAGGCCGATGATGCAAACAAAGACTGCACTGG
AGTTTGCGTGGCCGATCGCATAGCGGAGTACTGTGAGGCCTATTTGACCA
GCGATGGACTGTGCAAGGAAGGCACCAAGTGCTGCGTCTCCCTGGATGAG
TATTCCAATGGCAAGCTGCCCAAGGATATCTATATTCCAGCCAAACATAT
GAGCAACTTGAAGCCCAACCAGACGCTGTCCGAAAAATCGGCTCCCGCCA
AGAGTTCCAGTACGTCCACGACGTCCACTACTACCACCACCAGCACTACC
ACAACACCCGAACCGGCTAGAATAAACAACAGTTCTCCGAAGCCCACCAA
ACACAAGAAGCATCCGACCACCACAACGACGGAGGCAGCCGAGGAAGAGG
AGGAGCAGGAGACGGAGGAGGATGGCGAGGAGGAGGAGCCACCACTGAGC
AACAAGCTGAAGTCCGGACAAGGTCAGGGTCAGGTGTTGAAGGAATGCGA
GGGCGAGTGCATGAATGGAATATTTGCGATCTTCTGTGATGACATCGATT
CCGATGCTTTCTGTCCCGGAGAAGAAAGCTGTTGTGTGACTGGAGGTGCC
TCGGAGGCAACACCCTCCTCCAAGGCTCCACCCACCAAGCCGGCCATCAA
GCATGCTCCCAAGCCAGCAGCCAAGCCCGCTCGTCCCGCGTCTCCACCGC
CAGCACCACCATCTTCGACCTCTGGAGGCGGAGGAGGTGGTGACTTCCTC
TCTCAAATCATATCCTTTGCGGAGAGCACTCTGAACTCGCCATCTCCACC
ACCGCCACCACCTCAGGCTCCGATTCAGGTGCCTCGCTGTCCAGGATTCT
GTCTGCTCAACATTATGGCCGCCTTCTGCGAGAGACCCTCGGTGCTGGTT
TCCACACCCACAACGTGTGCCAAGGGTTCGGTATGCTGCGACAACTCAAG
AGCCGGAGCTCCCAAGCCCAAGTTGCCACCACCGACGCCGTCGCCCACGG
CCTCGCCCACTGCTCCACCATATGTCCTGCCCAATACCCCGAGTCCCGAT
CCGCGAGAAGAATGCCCAGGATCCTGTATCGTCAGCCTGCTCAGCTTCAC
TTGCTTCAAAAACGCCGAGATGACTGACTTGTTCCGCTGCAAGCGTTCCG
GCCAGATTTGCTGTGCGCCCAAGAGCAAGATCCTTGAGAAGCAGCAGTTC
CAGACGCGCAACGACACCGCCTACTACCCGGCACCGCCGCCACCGCCCAT
TGGTCCACCACAGGCATATCCCCCACAGACACCACCCTACTCCTACATGA
ACAATCCACCGCCACAGGGACCTCCACCCCAGATGGCGCCTCACCACCCC
AATCCCTACCAGCCACCGCCACCGGCGCCCAACTACGCAGATTACTATCC
AGTTTCCGGACCGGGACTACCTCCACAACCTCAGCCACCGATGACCACGC
CTCCGACGACAACTACAACCACCACGACTCCACGGCCACATGTCTACTCC
AAGTATGTGTGTGGTGTGAAGGGAACTCTGCGAACGGGAAGATCCCAGGC
TCTATCTTTCGTCTCCTACGCCCGTGCCAAGTACGGAGTACAGAGAACAG
CTCGCCAGATGACCTCCGCCGCCGGATACTCTCCCAACTTCAACAAATCC
AATGAGAGATTGGTCCTAGGATCCGCCATTGTGCCCATCCAGATTCACAA
CGACAAACTGGGTGACCTAGTGGAGTCCAGCAGTCTACAGAGCAACCAAT
TACGTTCGTACCACAATCACCAAGCTCAGGCAGATCAGCCGGATCTGGTC
TATCCGGAATACTACCAACAGAGGTCTCTTTACGGACTCCAGTCGAACTT
CAGCGGAAGACGAAGGGCACGAGTGGTGGGAGGAGAGGATGGCGAGAATG
GAGAGTGGTGCTGGCAGGTGGCTTTGATCAATTCCTTGAATCAATATCTA
TGTGGAGCTGCTTTAATCGGAACCCAGTGGGTTCTTACCGCAGCCCATTG
TGTGACCAACATTGTTCGTTCCGGAGATGCTATCTACGTGCGGGTTGGTG
ATTACGATCTAACCCGGAAATACGGCAGTCCAGGAGCACAGACATTGCGC
GTGGCCACCACCTACATCCATCACAACCACAATAGCCAGACCCTGGACAA
CGATATTGCTCTCCTGAAGCTCCATGGTCAAGCGGAGCTTCGAGATGGAG
TGTGCTTGGTGTGTCTTCCTGCACGAGGAGTCAGCCATGCGGCGGGCAAG
CGATGCACGGTGACCGGATACGGATATATGGGTGAAGCTGGTCCCATTCC
CCTGCGAGTGCGTGAGGCGGAGATTCCCATTGTGAGCGATACGGAGTGCA
TACGGAAGGTGAACGCCGTGACGGAGAAGATCTTCATCCTGCCCGCCTCC
AGTTTCTGTGCCGGCGGAGAGGAGGGACACGATGCCTGCCAGGGCGATGG
AGGTGGTCCACTAGTTTGCCAAGATGATGGGTTCTACGAGCTGGCCGGCC
TCGTCTCCTGGGGATTCGGCTGCGGGCGACAGGATGTGCCCGGCGTCTAT
GTGAAGACGTCCTCGTTCATCGGCTGGATCAACCAGATCATCAGCGTGAA
TAACTTAGCAAGCTTTCTAGACCAT

BO14085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
mas-RB 3144 CG15002-PB 1..3141 17..3157 15705 100 Plus
mas-RC 3141 CG15002-PC 1..3138 17..3157 15625 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
mas-RB 3657 CG15002-RB 185..3325 17..3157 15705 100 Plus
mas-RC 3654 CG15002-RC 185..3322 17..3157 15625 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4163670..4164584 1658..744 4575 100 Minus
3L 28110227 3L 4162713..4163613 2559..1659 4505 100 Minus
3L 28110227 3L 4161998..4162320 3157..2835 1615 100 Minus
3L 28110227 3L 4164885..4165183 587..289 1495 100 Minus
3L 28110227 3L 4162377..4162658 2837..2556 1395 99.6 Minus
3L 28110227 3L 4164644..4164799 743..588 780 100 Minus
3L 28110227 3L 4165243..4165394 290..139 760 100 Minus
3L 28110227 3L 4165463..4165588 142..17 630 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:29:33 has no hits.

BO14085.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:34 Download gff for BO14085.complete
Subject Subject Range Query Range Percent Splice Strand
mas-RB 182..3322 17..3157 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:03 Download gff for BO14085.complete
Subject Subject Range Query Range Percent Splice Strand
mas-RB 185..3325 17..3159 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:41 Download gff for BO14085.complete
Subject Subject Range Query Range Percent Splice Strand
mas-RB 182..3322 17..3159 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:07 Download gff for BO14085.complete
Subject Subject Range Query Range Percent Splice Strand
mas-RB 185..3325 17..3159 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:07 Download gff for BO14085.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4165243..4165392 141..290 100 <- Minus
3L 4165465..4165588 17..140 100   Minus
3L 4161996..4162317 2838..3159 99 <- Minus
3L 4162377..4162654 2560..2837 100 <- Minus
3L 4162713..4163613 1659..2559 100 <- Minus
3L 4163670..4164584 744..1658 100 <- Minus
3L 4164644..4164799 588..743 100 <- Minus
3L 4164885..4165181 291..587 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:03 Download gff for BO14085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4161996..4162317 2838..3159 99 <- Minus
arm_3L 4162377..4162654 2560..2837 100 <- Minus
arm_3L 4162713..4163613 1659..2559 100 <- Minus
arm_3L 4163670..4164584 744..1658 100 <- Minus
arm_3L 4164644..4164799 588..743 100 <- Minus
arm_3L 4164885..4165181 291..587 100 <- Minus
arm_3L 4165243..4165392 141..290 100 <- Minus
arm_3L 4165465..4165588 17..140 100   Minus

BO14085.pep Sequence

Translation from 16 to 3175

> BO14085.pep
MPRHSSTMSRLVLPLIFSILLVSKPSPSQAQDESLAGSFLSGLLDTITST
ADSKDCPGVCVHTLATLICYEVLDDVACPSPSMKCCIENAPAGKNATAVR
ATTTPKTTTTASTTTTQRTTTTVATTSTTKRTTTTSTTPKPKPKPQTKRP
ATSSTTKATVATTKKPSTTKKVATAKPKDKEEATKADDANKDCTGVCVAD
RIAEYCEAYLTSDGLCKEGTKCCVSLDEYSNGKLPKDIYIPAKHMSNLKP
NQTLSEKSAPAKSSSTSTTSTTTTTSTTTTPEPARINNSSPKPTKHKKHP
TTTTTEAAEEEEEQETEEDGEEEEPPLSNKLKSGQGQGQVLKECEGECMN
GIFAIFCDDIDSDAFCPGEESCCVTGGASEATPSSKAPPTKPAIKHAPKP
AAKPARPASPPPAPPSSTSGGGGGGDFLSQIISFAESTLNSPSPPPPPPQ
APIQVPRCPGFCLLNIMAAFCERPSVLVSTPTTCAKGSVCCDNSRAGAPK
PKLPPPTPSPTASPTAPPYVLPNTPSPDPREECPGSCIVSLLSFTCFKNA
EMTDLFRCKRSGQICCAPKSKILEKQQFQTRNDTAYYPAPPPPPIGPPQA
YPPQTPPYSYMNNPPPQGPPPQMAPHHPNPYQPPPPAPNYADYYPVSGPG
LPPQPQPPMTTPPTTTTTTTTPRPHVYSKYVCGVKGTLRTGRSQALSFVS
YARAKYGVQRTARQMTSAAGYSPNFNKSNERLVLGSAIVPIQIHNDKLGD
LVESSSLQSNQLRSYHNHQAQADQPDLVYPEYYQQRSLYGLQSNFSGRRR
ARVVGGEDGENGEWCWQVALINSLNQYLCGAALIGTQWVLTAAHCVTNIV
RSGDAIYVRVGDYDLTRKYGSPGAQTLRVATTYIHHNHNSQTLDNDIALL
KLHGQAELRDGVCLVCLPARGVSHAAGKRCTVTGYGYMGEAGPIPLRVRE
AEIPIVSDTECIRKVNAVTEKIFILPASSFCAGGEEGHDACQGDGGGPLV
CQDDGFYELAGLVSWGFGCGRQDVPGVYVKTSSFIGWINQIISVNNLASF
LDH

BO14085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
mas-PB 1047 CG15002-PB 1..1047 1..1047 5630 100 Plus
mas-PC 1046 CG15002-PC 1..1046 1..1047 5608 99.8 Plus
Np-PB 1041 CG34350-PB 154..1039 101..1042 503 24.2 Plus
Np-PA 1041 CG34350-PA 154..1039 101..1042 503 24.2 Plus
Sb-PB 787 CG4316-PB 340..782 580..1038 455 30.3 Plus
Np-PB 1041 CG34350-PB 319..686 81..457 193 24.9 Plus
Np-PA 1041 CG34350-PA 319..686 81..457 193 24.9 Plus
Np-PB 1041 CG34350-PB 502..701 95..308 185 31.8 Plus
Np-PA 1041 CG34350-PA 502..701 95..308 185 31.8 Plus
Np-PB 1041 CG34350-PB 510..776 79..307 169 27.5 Plus
Np-PA 1041 CG34350-PA 510..776 79..307 169 27.5 Plus