Clone Sequence Records
BO14086.3prime Sequence
787 bp (687 high quality bases) assembled on 2006-05-29
> BO14086.3prime
ATGGTCTAGAAAGCTTGCCGTGAACAGATCCAATTCCAAATCCGCCGTAG
CATGCGCCTTGCCACCCACACCTGCTATGGCCACAGATTCCGGATTGAAG
TAAACGTTGGTGGGTACACCCTTCTTCAGATACGCCTTGGAAATGGGCGT
GGATATGGCAGTGCCACCATTACCAACCACCGCTTTGGAATGAGGTTCCA
GGATGAGTGCAGCCTGCTTGCGTCCCTGGATCGCCTGAGCCTGCTCCGGT
CTATAGGGCAGGAAGTAGTTTCCAAATGGGATCTGCGGAAAGTTGCCGGA
ACTCGTGCTGGTCTTTCCGGTGGCCTCAACCTTCAAGGGAACTCTTCCAC
CCGCCTGCTTTCTCATTTTTTGTGGGGCAATCGCCTTCTTCAACTGCTGC
TTGGCGGAGCGGGGTGACCCAGAAGTGGAGATCACTAGCTTGCCCGGCAC
CGGAACGATCTCTTCGATCACATACTCGGGGTTTATTTTGCTGACCGCTG
AGCGGAGACCCACATCACTCTTCAGATCCCCAGTGGTTCGGGTCTTCACT
GCAGGCAGAGCCTGTAGCTTTTCTGGTTTCTCCAACTCGCTGGAGCTGTC
ATCAGCTAAGCTTTCGGGTCGGCCAGTTGTGGTAGTGGTCGTTGTGGTTG
TTGCACTGGCTATGGTGGCTTGATCGGCACTGGCGATGGTGGGTTGCACC
ACATAGGCCAGGGGCAGATTGTAGGCGGCGTAGTATGGGGCACTGAACAG
CACGGGTTGATAGGCTCCATAGGGCGTGAGGTCCTGG
BO14086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-PC | 948 | CG11905-RC | 177..945 | 787..19 | 3845 | 100 | Minus |
CG11905-PE | 948 | CG11905-RE | 177..945 | 787..19 | 3845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RH | 1480 | CG11905-RH | 446..1214 | 787..19 | 3845 | 100 | Minus |
CG11905-RE | 1539 | CG11905-RE | 505..1273 | 787..19 | 3845 | 100 | Minus |
CG11905-RC | 1357 | CG11905-RC | 323..1091 | 787..19 | 3845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16930120..16930888 | 19..787 | 3845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:08:10 has no hits.
BO14086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:44 Download gff for
BO14086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-PE | 177..948 | 15..787 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:56 Download gff for
BO14086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-PE | 177..948 | 15..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:11:19 Download gff for
BO14086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 323..1096 | 14..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:04:20 Download gff for
BO14086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 323..1096 | 14..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:04:20 Download gff for
BO14086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16930115..16930888 | 14..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:11:19 Download gff for
BO14086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16923215..16923988 | 14..787 | 99 | | Plus |
BO14086.5prime Sequence
713 bp (670 high quality bases) assembled on 2006-05-29
> BO14086.5prime
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGGCTCAACAGCACGGTGGACTGGCCGTCGAT
GCCTACTGGCGCACAACCAATATCGAGGCCTGGCCACCAGGAGCACCCGT
CGCAGAGAAGTCCGGAAAACTCATTGCAGGATCTGCTCCGGCCCAGGACC
TCACGCCCTATGGAGCCTATCAACCCGTGCTGTTCAGTGCCCCATACTAC
GCCGCCTACAATCTGCCCCTGGCCTATGTGGTGCAACCCACCATCGCCAG
TGCCGATCAAGCCACCATAGCCAGTGCAACAACCACAACGACCACTACCA
CAACTGGCCGACCCGAAAGCTTAGCTGATGACAGCTCCAGCGAGTTGGAG
AAACCAGAAAAGCTACAGGCTCTGCCTGCAGTGAAGACCCGAACCACTGG
GGATCTGAAGAGTGATGTGGGTCTCCGCTCAGCGGTCAGCAAAATAAACC
CCGAGTATGTGATCGAAGAGATCGTTCCGGTGCCGGGCAAGCTAGTGATC
TCCACTTCTGGGTCACCCCGCTCCGCCAAGCAGCAGTTGAAGAAGGCGAT
TGCCCCACAAAAAATGAGAAAGCAGGCGGGTGGAAGAGTTCCCTTGAAGG
TTGAGGCCACCGGAAAGACCAGCACGAGTTCCGGCAACTTTCCCCAAATC
CCATTTGGAAACC
BO14086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-PC | 948 | CG11905-RC | 1..696 | 17..712 | 3430 | 99.7 | Plus |
CG11905-PE | 948 | CG11905-RE | 1..696 | 17..712 | 3430 | 99.7 | Plus |
CG11905-PB | 1212 | CG11905-RB | 1..83 | 17..99 | 415 | 100 | Plus |
CG11905-PF | 1212 | CG11905-RF | 1..83 | 17..99 | 415 | 100 | Plus |
CG11905-PA | 1824 | CG11905-RA | 1..83 | 17..99 | 415 | 100 | Plus |
CG11905-PG | 1824 | CG11905-RG | 1..83 | 17..99 | 415 | 100 | Plus |
CG11905-PD | 1824 | CG11905-RD | 1..83 | 17..99 | 415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RH | 1480 | CG11905-RH | 270..965 | 17..712 | 3450 | 99.7 | Plus |
CG11905-RE | 1539 | CG11905-RE | 329..1024 | 17..712 | 3450 | 99.7 | Plus |
CG11905-RC | 1357 | CG11905-RC | 147..842 | 17..712 | 3450 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16930369..16930981 | 712..100 | 3035 | 99.7 | Minus |
3L | 28110227 | 3L | 16933293..16933360 | 99..32 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:35:00 has no hits.
BO14086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:45 Download gff for
BO14086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-PE | 1..696 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:10:58 Download gff for
BO14086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-PE | 1..696 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:47:39 Download gff for
BO14086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 141..842 | 11..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:20 Download gff for
BO14086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 141..842 | 11..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:20 Download gff for
BO14086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16930368..16930981 | 100..713 | 99 | <- | Minus |
3L | 16933293..16933360 | 32..99 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:47:39 Download gff for
BO14086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16923468..16924081 | 100..713 | 99 | <- | Minus |
arm_3L | 16926393..16926460 | 32..99 | 100 | <- | Minus |
BO14086.complete Sequence
979 bp assembled on 2006-10-11
GenBank Submission: FJ633021
> BO14086.complete
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGGCTCAACAGCACGGTGGACTGGCCGTCGAT
GCCTACTGGCGCACAACCAATATCGAGGCCTGGCCACCAGGAGCACCCGT
CGCAGAGAAGTCCGGAAAACTCATTGCAGGATCTGCTCCGGCCCAGGACC
TCACGCCCTATGGAGCCTATCAACCCGTGCTGTTCAGTGCCCCATACTAC
GCCGCCTACAATCTGCCCCTGGCCTATGTGGTGCAACCCACCATCGCCAG
TGCCGATCAAGCCACCATAGCCAGTGCAACAACCACAACGACCACTACCA
CAACTGGCCGACCCGAAAGCTTAGCTGATGACAGCTCCAGCGAGTTGGAG
AAACCAGAAAAGCTACAGGCTCTGCCTGCAGTGAAGACCCGAACCACTGG
GGATCTGAAGAGTGATGTGGGTCTCCGCTCAGCGGTCAGCAAAATAAACC
CCGAGTATGTGATCGAAGAGATCGTTCCGGTGCCGGGCAAGCTAGTGATC
TCCACTTCTGGGTCACCCCGCTCCGCCAAGCAGCAGTTGAAGAAGGCGAT
TGCCCCACAAAAAATGAGAAAGCAGGCGGGTGGAAGAGTTCCCTTGAAGG
TTGAGGCCACCGGAAAGACCAGCACGAGTTCCGGCAACTTTCCGCAGATC
CCATTTGGAAACTACTTCCTGCCCTATAGACCGGAGCAGGCTCAGGCGAT
CCAGGGACGCAAGCAGGCTGCACTCATCCTGGAACCTCATTCCAAAGCGG
TGGTTGGTAATGGTGGCACTGCCATATCCACGCCCATTTCCAAGGCGTAT
CTGAAGAAGGGTGTACCCACCAACGTTTACTTCAATCCGGAATCTGTGGC
CATAGCAGGTGTGGGTGGCAAGGCGCATGCTACGGCGGATTTGGAATTGG
ATCTGTTCACGGCAAGCTTTCTAGACCAT
BO14086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RH | 948 | CG11905-PH | 1..945 | 17..961 | 4725 | 100 | Plus |
CG11905-RE | 948 | CG11905-PE | 1..945 | 17..961 | 4725 | 100 | Plus |
CG11905-RC | 948 | CG11905-PC | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RH | 1480 | CG11905-RH | 270..1214 | 17..961 | 4725 | 100 | Plus |
CG11905-RE | 1539 | CG11905-RE | 329..1273 | 17..961 | 4725 | 100 | Plus |
CG11905-RC | 1357 | CG11905-RC | 147..1091 | 17..961 | 4725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16930120..16930981 | 961..100 | 4310 | 100 | Minus |
3L | 28110227 | 3L | 16933293..16933360 | 99..32 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:37:29 has no hits.
BO14086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:45 Download gff for
BO14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RH | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:40 Download gff for
BO14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RH | 260..1215 | 11..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:06 Download gff for
BO14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 147..1091 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:46 Download gff for
BO14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RH | 260..1215 | 11..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:19 Download gff for
BO14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RC | 147..1091 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:19 Download gff for
BO14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16930118..16930981 | 100..963 | 99 | <- | Minus |
3L | 16933293..16933360 | 32..99 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:06 Download gff for
BO14086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16923218..16924081 | 100..963 | 99 | <- | Minus |
arm_3L | 16926393..16926460 | 32..99 | 100 | <- | Minus |
BO14086.pep Sequence
Translation from 16 to 979
> BO14086.pep
MRFLVLSTLLLASLALGQAQQHGGLAVDAYWRTTNIEAWPPGAPVAEKSG
KLIAGSAPAQDLTPYGAYQPVLFSAPYYAAYNLPLAYVVQPTIASADQAT
IASATTTTTTTTTGRPESLADDSSSELEKPEKLQALPAVKTRTTGDLKSD
VGLRSAVSKINPEYVIEEIVPVPGKLVISTSGSPRSAKQQLKKAIAPQKM
RKQAGGRVPLKVEATGKTSTSSGNFPQIPFGNYFLPYRPEQAQAIQGRKQ
AALILEPHSKAVVGNGGTAISTPISKAYLKKGVPTNVYFNPESVAIAGVG
GKAHATADLELDLFTASFLDH
BO14086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-PH | 315 | CG11905-PH | 1..315 | 1..315 | 1589 | 100 | Plus |
CG11905-PE | 315 | CG11905-PE | 1..315 | 1..315 | 1589 | 100 | Plus |
CG11905-PC | 315 | CG11905-PC | 1..315 | 1..315 | 1589 | 100 | Plus |