Clone BO14088 Report

Search the DGRC for BO14088

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG6569-RA
Protein status:BO14088.pep: Imported from assembly
Sequenced Size:1312

Clone Sequence Records

BO14088.3prime Sequence

706 bp (651 high quality bases) assembled on 2006-05-29

> BO14088.3prime
ATGGTCTAGAAAGCTTGCGCGTGAAGTCTGCTTGGAGCTATCGCCTGCGG
CACCGCTCTTAAGCAGTTCGTTTTCCGCCAGCAGCACGGAGTTCTCCTCC
CTTAACTTGTAAATTTCCGATTCGAAGCGTTGCGTGATGTCCTCCATGCC
CTCGCGGTATTTCTCCTTCATTTTCTTGTGATCCATTATGCAGCGATCCA
TTTGAGACTTATAGTACATTTTTATCCTGGCATCTTCGGCATCCCCACCG
TAAGCTTCAGTAACGGATCGCTCCAGTTCGCCAAGTCGCCGGCAAGTTGC
CTCCAACTCGGCCTCCAGCTTATCGTTCTGCTTCAGCACCTCCTTGTACT
TTTGCTCCAGGCGATTGCTCCGGGTCTCCAGCATGTGCACCACCGACTTA
TGATCGACAGCCAGTTTTTTCAGCTTCTCCTTTATGGTGGTAATTATAAT
GTCCTTTTGCTTGAGCATATTCTTCAGATGGCCCACTTCAACGTCGACGC
GTGTGGAGGCCTCATCCATTATGGTACCGATATTGGAGGCTAGGTGGGTC
ATCTCCTCCTTGTAGGTCTCGGCCAGCTTTGTGGCATCTATTTTCTCCTT
GTTTGCCTCTTCGCTGAGTATGATAGCCTCCTCGAGCTTGCGCATGGCGG
CGGTTTCCCGTCTTGTGCTCTCCATGGAGCAAATTGTGGGTGTGGCTCAA
CGATAG

BO14088.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-PA 1281 CG6569-RA 621..1278 676..19 3290 100 Minus
CG6569-PB 1230 CG6569-RB 570..1227 676..19 3290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-RB 1492 CG6569-RB 732..1418 706..19 3400 99.7 Minus
CG6569-RA 1428 CG6569-RA 668..1354 706..19 3400 99.7 Minus
CG6569-RD 810 CG6569-RD 758..810 706..653 230 96.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21866767..21867048 424..706 1350 99.3 Plus
3R 32079331 3R 21866246..21866450 19..223 1025 100 Plus
3R 32079331 3R 21866510..21866711 224..425 1010 100 Plus
Blast to na_te.dros performed on 2015-02-02 20:00:13 has no hits.

BO14088.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:48 Download gff for BO14088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-PB 541..1230 16..706 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:02 Download gff for BO14088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-PB 541..1230 16..706 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:55:58 Download gff for BO14088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 668..1354 19..706 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:12:52 Download gff for BO14088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 668..1354 19..706 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:12:52 Download gff for BO14088.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21866246..21866450 19..223 100 <- Plus
3R 21866510..21866709 224..423 100 <- Plus
3R 21866767..21867048 424..706 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:55:58 Download gff for BO14088.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17691968..17692172 19..223 100 <- Plus
arm_3R 17692232..17692431 224..423 100 <- Plus
arm_3R 17692489..17692770 424..706 99   Plus

BO14088.5prime Sequence

688 bp (660 high quality bases) assembled on 2006-05-29

> BO14088.5prime
GAAGTTATCAGTCGACATGACACAACACGAAAATCAGCAAGCCATTCTCA
GCAACTTTGTGCTGGAAATGTGTGAAGGAGTGGATCGACTGATGCGGGAT
CAGGCCGAACTGAAGGTTCACCTCAACGAAATTCTAAATGAGAACCGCCG
GCTGGACATCGAATTGGCCAAATGCAGGAGCATCTTGGTTAGCGGCGATT
ACCAGGAGCTCAAGCATCGCCTTCAACTCAGCAACAAGGCTTTGGACGCG
TCCAAGAAGCAGGTGGATGAGCTTATCAAGGAACGGAACAGCCTGAAAAC
CATGCATGACCTCTCCAAACAGACCATCGAAACCATGGAGATGGATCTTA
AGAATTATCGCGTCCAATTGAAAATGTCTGGAGATGACCAGGTCATACAG
CGGTACTCGAAGATCGTCAAAGTGCTGGAGGCAAAAGTTGAGGACCAGCA
GAAGGAGATACGCACGCAGGCGGAGACCATAAAGGCCCTGCACGATCACA
AGCAGCACAGCGGATTGCAACTCCAGCAGCTGCATGCTCAACTGCAGGAT
AGCGAGCAGAGTCAATCCAAGGTGTCCATCCTGCAGAAGCAGCTTAAGGA
GTACGAACTATCGCTGAGCCACACCCACAATTTGCTCATTGGAGAGCACA
AGACGGGAAACCGCCGCCATGCGCAAGCTCGAGGAGGC

BO14088.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-PA 1281 CG6569-RA 1..623 17..639 3115 100 Plus
CG6569-PB 1230 CG6569-RB 1..572 68..639 2860 100 Plus
CG6569-PA 1281 CG6569-RA 623..671 640..688 245 100 Plus
CG6569-PB 1230 CG6569-RB 572..620 640..688 245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-RA 1428 CG6569-RA 77..747 17..688 3335 99.9 Plus
CG6569-RB 1492 CG6569-RB 174..811 50..688 3170 99.8 Plus
CG6569-RC 782 CG6569-RC 77..452 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21867403..21867746 393..50 1720 100 Minus
3R 32079331 3R 21866969..21867266 688..390 1445 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 13:25:52 has no hits.

BO14088.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:49 Download gff for BO14088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-PA 1..671 17..688 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:04 Download gff for BO14088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-PA 1..671 17..688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:04 Download gff for BO14088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 77..747 17..688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:56 Download gff for BO14088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 77..747 17..688 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:56 Download gff for BO14088.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21866969..21867264 392..688 99 <- Minus
3R 21867405..21867744 52..391 100 <- Minus
3R 21867809..21867843 17..51 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:04 Download gff for BO14088.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17692691..17692986 392..688 99 <- Minus
arm_3R 17693127..17693466 52..391 100 <- Minus
arm_3R 17693531..17693565 17..51 100   Minus

BO14088.complete Sequence

1312 bp assembled on 2008-08-14

GenBank Submission: FJ633022

> BO14088.complete
GAAGTTATCAGTCGACATGACACAACACGAAAATCAGCAAGCCATTCTCA
GCAACTTTGTGCTGGAAATGTGTGAAGGAGTGGATCGACTGATGCGGGAT
CAGGCCGAACTGAAGGTTCACCTCAACGAAATTCTAAATGAGAACCGCCG
GCTGGACATCGAATTGGCCAAATGCAGGAGCATCTTGGTTAGCGGCGATT
ACCAGGAGCTCAAGCATCGCCTTCAACTCAGCAACAAGGCTTTGGACGCG
TCCAAGAAGCAGGTGGATGAGCTTATCAAGGAACGGAACAGCCTGAAAAC
CATGCATGACCTCTCCAAACAGACCATCGAAACCATGGAGATGGATCTTA
AGAATTATCGCGTCCAATTGAAAATGTCTGGAGATGACCAGGTCATACAG
CGGTACTCGAAGATCGTCAAAGTGCTGGAGGCAAAAGTTGAGGACCAGCA
GAAGGAGATACGCACGCAGGCGGAGACCATAAAGGCCCTGCACGATCACA
AGCAGCACAGCGGATTGCAACTCCAGCAGCTGCATGCTCAACTGCAGGAT
AGCGAGCAGAGTCAATCCAAGGTGTCCATCCTGCAGAAGCAGCTTAAGGA
GTACGAACTATCGCTGAGCCACACCCACAATTTGCTCATGGAGAGCACAA
GACGGGAAACCGCCGCCATGCGCAAGCTCGAGGAGGCTATCATACTCAGC
GAAGAGGCAAACAAGGAGAAAATAGATGCCACAAAGCTGGCCGAGACCTA
CAAGGAGGAGATGACCCACCTAGCCTCCAATATCGGTACCATAATGGATG
AGGCCTCCACACGCGTCGACGTTGAAGTGGGCCATCTGAAGAATATGCTC
AAGCAAAAGGACATTATAATTACCACCATAAAGGAGAAGCTGAAAAAACT
GGCTGTCGATCATAAGTCGGTGGTGCACATGCTGGAGACCCGGAGCAATC
GCCTGGAGCAAAAGTACAAGGAGGTGCTGAAGCAGAACGATAAGCTGGAG
GCCGAGTTGGAGGCAACTTGCCGGCGACTTGGCGAACTGGAGCGATCCGT
TACTGAAGCTTACGGTGGGGATGCCGAAGATGCCAGGATAAAAATGTACT
ATAAGTCTCAAATGGATCGCTGCATAATGGATCACAAGAAAATGAAGGAG
AAATACCGCGAGGGCATGGAGGACATCACGCAACGCTTCGAATCGGAAAT
TTACAAGTTAAGGGAGGAGAACTCCGTGCTGCTGGCGGAAAACGAACTGC
TTAAGAGCGGTGCCGCAGGCGATAGCTCCAAGCAGACTTCACGCGCAAGC
TTTCTAGACCAT

BO14088.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-RA 1281 CG6569-PA 1..1278 17..1294 6390 100 Plus
CG6569-RB 1230 CG6569-PB 1..1227 68..1294 6135 100 Plus
CG6569-RC 408 CG6569-PC 1..376 17..392 1880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-RA 1428 CG6569-RA 77..1354 17..1294 6390 100 Plus
CG6569-RB 1492 CG6569-RB 174..1418 50..1294 6225 100 Plus
CG6569-RC 782 CG6569-RC 77..452 17..392 1880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21866767..21867266 889..390 2500 100 Minus
3R 32079331 3R 21867403..21867746 393..50 1720 100 Minus
3R 32079331 3R 21866246..21866450 1294..1090 1025 100 Minus
3R 32079331 3R 21866510..21866711 1089..888 1010 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:44:24 has no hits.

BO14088.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:28 Download gff for BO14088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 261..1538 17..1294 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:38 Download gff for BO14088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 77..1354 17..1296 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:07 Download gff for BO14088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 261..1538 17..1296 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:07 Download gff for BO14088.complete
Subject Subject Range Query Range Percent Splice Strand
CG6569-RA 77..1354 17..1296 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:07 Download gff for BO14088.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21866243..21866450 1090..1296 99 <- Minus
3R 21866510..21866709 890..1089 100 <- Minus
3R 21866767..21867264 392..889 100 <- Minus
3R 21867405..21867744 52..391 100 <- Minus
3R 21867809..21867843 17..51 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:38 Download gff for BO14088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17691965..17692172 1090..1296 99 <- Minus
arm_3R 17692232..17692431 890..1089 100 <- Minus
arm_3R 17692489..17692986 392..889 100 <- Minus
arm_3R 17693127..17693466 52..391 100 <- Minus
arm_3R 17693531..17693565 17..51 100   Minus

BO14088.pep Sequence

Translation from 16 to 1312

> BO14088.pep
MTQHENQQAILSNFVLEMCEGVDRLMRDQAELKVHLNEILNENRRLDIEL
AKCRSILVSGDYQELKHRLQLSNKALDASKKQVDELIKERNSLKTMHDLS
KQTIETMEMDLKNYRVQLKMSGDDQVIQRYSKIVKVLEAKVEDQQKEIRT
QAETIKALHDHKQHSGLQLQQLHAQLQDSEQSQSKVSILQKQLKEYELSL
SHTHNLLMESTRRETAAMRKLEEAIILSEEANKEKIDATKLAETYKEEMT
HLASNIGTIMDEASTRVDVEVGHLKNMLKQKDIIITTIKEKLKKLAVDHK
SVVHMLETRSNRLEQKYKEVLKQNDKLEAELEATCRRLGELERSVTEAYG
GDAEDARIKMYYKSQMDRCIMDHKKMKEKYREGMEDITQRFESEIYKLRE
ENSVLLAENELLKSGAAGDSSKQTSRASFLDH

BO14088.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6569-PA 426 CG6569-PA 1..426 1..426 2118 100 Plus
CG6569-PB 409 CG6569-PB 1..409 18..426 2033 100 Plus
CG6569-PC 135 CG6569-PC 1..135 1..135 636 94.8 Plus
CG6569-PD 125 CG6569-PD 1..125 1..125 628 100 Plus
cana-PC 1409 CG33694-PC 456..830 74..408 176 22.2 Plus