Clone Sequence Records
BO14088.3prime Sequence
706 bp (651 high quality bases) assembled on 2006-05-29
> BO14088.3prime
ATGGTCTAGAAAGCTTGCGCGTGAAGTCTGCTTGGAGCTATCGCCTGCGG
CACCGCTCTTAAGCAGTTCGTTTTCCGCCAGCAGCACGGAGTTCTCCTCC
CTTAACTTGTAAATTTCCGATTCGAAGCGTTGCGTGATGTCCTCCATGCC
CTCGCGGTATTTCTCCTTCATTTTCTTGTGATCCATTATGCAGCGATCCA
TTTGAGACTTATAGTACATTTTTATCCTGGCATCTTCGGCATCCCCACCG
TAAGCTTCAGTAACGGATCGCTCCAGTTCGCCAAGTCGCCGGCAAGTTGC
CTCCAACTCGGCCTCCAGCTTATCGTTCTGCTTCAGCACCTCCTTGTACT
TTTGCTCCAGGCGATTGCTCCGGGTCTCCAGCATGTGCACCACCGACTTA
TGATCGACAGCCAGTTTTTTCAGCTTCTCCTTTATGGTGGTAATTATAAT
GTCCTTTTGCTTGAGCATATTCTTCAGATGGCCCACTTCAACGTCGACGC
GTGTGGAGGCCTCATCCATTATGGTACCGATATTGGAGGCTAGGTGGGTC
ATCTCCTCCTTGTAGGTCTCGGCCAGCTTTGTGGCATCTATTTTCTCCTT
GTTTGCCTCTTCGCTGAGTATGATAGCCTCCTCGAGCTTGCGCATGGCGG
CGGTTTCCCGTCTTGTGCTCTCCATGGAGCAAATTGTGGGTGTGGCTCAA
CGATAG
BO14088.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6569-PA | 1281 | CG6569-RA | 621..1278 | 676..19 | 3290 | 100 | Minus |
CG6569-PB | 1230 | CG6569-RB | 570..1227 | 676..19 | 3290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6569-RB | 1492 | CG6569-RB | 732..1418 | 706..19 | 3400 | 99.7 | Minus |
CG6569-RA | 1428 | CG6569-RA | 668..1354 | 706..19 | 3400 | 99.7 | Minus |
CG6569-RD | 810 | CG6569-RD | 758..810 | 706..653 | 230 | 96.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21866767..21867048 | 424..706 | 1350 | 99.3 | Plus |
3R | 32079331 | 3R | 21866246..21866450 | 19..223 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 21866510..21866711 | 224..425 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:00:13 has no hits.
BO14088.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:48 Download gff for
BO14088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-PB | 541..1230 | 16..706 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:02 Download gff for
BO14088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-PB | 541..1230 | 16..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:55:58 Download gff for
BO14088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-RA | 668..1354 | 19..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:12:52 Download gff for
BO14088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-RA | 668..1354 | 19..706 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:12:52 Download gff for
BO14088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21866246..21866450 | 19..223 | 100 | <- | Plus |
3R | 21866510..21866709 | 224..423 | 100 | <- | Plus |
3R | 21866767..21867048 | 424..706 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:55:58 Download gff for
BO14088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17691968..17692172 | 19..223 | 100 | <- | Plus |
arm_3R | 17692232..17692431 | 224..423 | 100 | <- | Plus |
arm_3R | 17692489..17692770 | 424..706 | 99 | | Plus |
BO14088.5prime Sequence
688 bp (660 high quality bases) assembled on 2006-05-29
> BO14088.5prime
GAAGTTATCAGTCGACATGACACAACACGAAAATCAGCAAGCCATTCTCA
GCAACTTTGTGCTGGAAATGTGTGAAGGAGTGGATCGACTGATGCGGGAT
CAGGCCGAACTGAAGGTTCACCTCAACGAAATTCTAAATGAGAACCGCCG
GCTGGACATCGAATTGGCCAAATGCAGGAGCATCTTGGTTAGCGGCGATT
ACCAGGAGCTCAAGCATCGCCTTCAACTCAGCAACAAGGCTTTGGACGCG
TCCAAGAAGCAGGTGGATGAGCTTATCAAGGAACGGAACAGCCTGAAAAC
CATGCATGACCTCTCCAAACAGACCATCGAAACCATGGAGATGGATCTTA
AGAATTATCGCGTCCAATTGAAAATGTCTGGAGATGACCAGGTCATACAG
CGGTACTCGAAGATCGTCAAAGTGCTGGAGGCAAAAGTTGAGGACCAGCA
GAAGGAGATACGCACGCAGGCGGAGACCATAAAGGCCCTGCACGATCACA
AGCAGCACAGCGGATTGCAACTCCAGCAGCTGCATGCTCAACTGCAGGAT
AGCGAGCAGAGTCAATCCAAGGTGTCCATCCTGCAGAAGCAGCTTAAGGA
GTACGAACTATCGCTGAGCCACACCCACAATTTGCTCATTGGAGAGCACA
AGACGGGAAACCGCCGCCATGCGCAAGCTCGAGGAGGC
BO14088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6569-PA | 1281 | CG6569-RA | 1..623 | 17..639 | 3115 | 100 | Plus |
CG6569-PB | 1230 | CG6569-RB | 1..572 | 68..639 | 2860 | 100 | Plus |
CG6569-PA | 1281 | CG6569-RA | 623..671 | 640..688 | 245 | 100 | Plus |
CG6569-PB | 1230 | CG6569-RB | 572..620 | 640..688 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6569-RA | 1428 | CG6569-RA | 77..747 | 17..688 | 3335 | 99.9 | Plus |
CG6569-RB | 1492 | CG6569-RB | 174..811 | 50..688 | 3170 | 99.8 | Plus |
CG6569-RC | 782 | CG6569-RC | 77..452 | 17..392 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21867403..21867746 | 393..50 | 1720 | 100 | Minus |
3R | 32079331 | 3R | 21866969..21867266 | 688..390 | 1445 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:25:52 has no hits.
BO14088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:49 Download gff for
BO14088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-PA | 1..671 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:04 Download gff for
BO14088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-PA | 1..671 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:04 Download gff for
BO14088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-RA | 77..747 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:56 Download gff for
BO14088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-RA | 77..747 | 17..688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:56 Download gff for
BO14088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21866969..21867264 | 392..688 | 99 | <- | Minus |
3R | 21867405..21867744 | 52..391 | 100 | <- | Minus |
3R | 21867809..21867843 | 17..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:04 Download gff for
BO14088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17692691..17692986 | 392..688 | 99 | <- | Minus |
arm_3R | 17693127..17693466 | 52..391 | 100 | <- | Minus |
arm_3R | 17693531..17693565 | 17..51 | 100 | | Minus |
BO14088.complete Sequence
1312 bp assembled on 2008-08-14
GenBank Submission: FJ633022
> BO14088.complete
GAAGTTATCAGTCGACATGACACAACACGAAAATCAGCAAGCCATTCTCA
GCAACTTTGTGCTGGAAATGTGTGAAGGAGTGGATCGACTGATGCGGGAT
CAGGCCGAACTGAAGGTTCACCTCAACGAAATTCTAAATGAGAACCGCCG
GCTGGACATCGAATTGGCCAAATGCAGGAGCATCTTGGTTAGCGGCGATT
ACCAGGAGCTCAAGCATCGCCTTCAACTCAGCAACAAGGCTTTGGACGCG
TCCAAGAAGCAGGTGGATGAGCTTATCAAGGAACGGAACAGCCTGAAAAC
CATGCATGACCTCTCCAAACAGACCATCGAAACCATGGAGATGGATCTTA
AGAATTATCGCGTCCAATTGAAAATGTCTGGAGATGACCAGGTCATACAG
CGGTACTCGAAGATCGTCAAAGTGCTGGAGGCAAAAGTTGAGGACCAGCA
GAAGGAGATACGCACGCAGGCGGAGACCATAAAGGCCCTGCACGATCACA
AGCAGCACAGCGGATTGCAACTCCAGCAGCTGCATGCTCAACTGCAGGAT
AGCGAGCAGAGTCAATCCAAGGTGTCCATCCTGCAGAAGCAGCTTAAGGA
GTACGAACTATCGCTGAGCCACACCCACAATTTGCTCATGGAGAGCACAA
GACGGGAAACCGCCGCCATGCGCAAGCTCGAGGAGGCTATCATACTCAGC
GAAGAGGCAAACAAGGAGAAAATAGATGCCACAAAGCTGGCCGAGACCTA
CAAGGAGGAGATGACCCACCTAGCCTCCAATATCGGTACCATAATGGATG
AGGCCTCCACACGCGTCGACGTTGAAGTGGGCCATCTGAAGAATATGCTC
AAGCAAAAGGACATTATAATTACCACCATAAAGGAGAAGCTGAAAAAACT
GGCTGTCGATCATAAGTCGGTGGTGCACATGCTGGAGACCCGGAGCAATC
GCCTGGAGCAAAAGTACAAGGAGGTGCTGAAGCAGAACGATAAGCTGGAG
GCCGAGTTGGAGGCAACTTGCCGGCGACTTGGCGAACTGGAGCGATCCGT
TACTGAAGCTTACGGTGGGGATGCCGAAGATGCCAGGATAAAAATGTACT
ATAAGTCTCAAATGGATCGCTGCATAATGGATCACAAGAAAATGAAGGAG
AAATACCGCGAGGGCATGGAGGACATCACGCAACGCTTCGAATCGGAAAT
TTACAAGTTAAGGGAGGAGAACTCCGTGCTGCTGGCGGAAAACGAACTGC
TTAAGAGCGGTGCCGCAGGCGATAGCTCCAAGCAGACTTCACGCGCAAGC
TTTCTAGACCAT
BO14088.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6569-RA | 1281 | CG6569-PA | 1..1278 | 17..1294 | 6390 | 100 | Plus |
CG6569-RB | 1230 | CG6569-PB | 1..1227 | 68..1294 | 6135 | 100 | Plus |
CG6569-RC | 408 | CG6569-PC | 1..376 | 17..392 | 1880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6569-RA | 1428 | CG6569-RA | 77..1354 | 17..1294 | 6390 | 100 | Plus |
CG6569-RB | 1492 | CG6569-RB | 174..1418 | 50..1294 | 6225 | 100 | Plus |
CG6569-RC | 782 | CG6569-RC | 77..452 | 17..392 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21866767..21867266 | 889..390 | 2500 | 100 | Minus |
3R | 32079331 | 3R | 21867403..21867746 | 393..50 | 1720 | 100 | Minus |
3R | 32079331 | 3R | 21866246..21866450 | 1294..1090 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 21866510..21866711 | 1089..888 | 1010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:44:24 has no hits.
BO14088.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:28 Download gff for
BO14088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-RA | 261..1538 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:38 Download gff for
BO14088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-RA | 77..1354 | 17..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:07 Download gff for
BO14088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-RA | 261..1538 | 17..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:07 Download gff for
BO14088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6569-RA | 77..1354 | 17..1296 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:07 Download gff for
BO14088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21866243..21866450 | 1090..1296 | 99 | <- | Minus |
3R | 21866510..21866709 | 890..1089 | 100 | <- | Minus |
3R | 21866767..21867264 | 392..889 | 100 | <- | Minus |
3R | 21867405..21867744 | 52..391 | 100 | <- | Minus |
3R | 21867809..21867843 | 17..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:38 Download gff for
BO14088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17691965..17692172 | 1090..1296 | 99 | <- | Minus |
arm_3R | 17692232..17692431 | 890..1089 | 100 | <- | Minus |
arm_3R | 17692489..17692986 | 392..889 | 100 | <- | Minus |
arm_3R | 17693127..17693466 | 52..391 | 100 | <- | Minus |
arm_3R | 17693531..17693565 | 17..51 | 100 | | Minus |
BO14088.pep Sequence
Translation from 16 to 1312
> BO14088.pep
MTQHENQQAILSNFVLEMCEGVDRLMRDQAELKVHLNEILNENRRLDIEL
AKCRSILVSGDYQELKHRLQLSNKALDASKKQVDELIKERNSLKTMHDLS
KQTIETMEMDLKNYRVQLKMSGDDQVIQRYSKIVKVLEAKVEDQQKEIRT
QAETIKALHDHKQHSGLQLQQLHAQLQDSEQSQSKVSILQKQLKEYELSL
SHTHNLLMESTRRETAAMRKLEEAIILSEEANKEKIDATKLAETYKEEMT
HLASNIGTIMDEASTRVDVEVGHLKNMLKQKDIIITTIKEKLKKLAVDHK
SVVHMLETRSNRLEQKYKEVLKQNDKLEAELEATCRRLGELERSVTEAYG
GDAEDARIKMYYKSQMDRCIMDHKKMKEKYREGMEDITQRFESEIYKLRE
ENSVLLAENELLKSGAAGDSSKQTSRASFLDH
BO14088.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6569-PA | 426 | CG6569-PA | 1..426 | 1..426 | 2118 | 100 | Plus |
CG6569-PB | 409 | CG6569-PB | 1..409 | 18..426 | 2033 | 100 | Plus |
CG6569-PC | 135 | CG6569-PC | 1..135 | 1..135 | 636 | 94.8 | Plus |
CG6569-PD | 125 | CG6569-PD | 1..125 | 1..125 | 628 | 100 | Plus |
cana-PC | 1409 | CG33694-PC | 456..830 | 74..408 | 176 | 22.2 | Plus |