Clone Sequence Records
BO14089.5prime Sequence
365 bp (364 high quality bases) assembled on 2006-05-29
> BO14089.5prime
GAAGTTATCAGTCGACATGCAGTCCTCCAGCATCTGTGTCCTGGCCATTT
GCGCCTTCGCTCTGCTCTCCACCATTAGGGCTGCTCCTCTGGACGACTCC
CAACATGCCACCATACTAAGATACGACAACGACAACATTGGCACTGATGG
CTACAACTTCGGCTACGAGACCAGTGATGGAGTTACCCGCCAGGAGCAGG
CTGAGGTGAAGAACGCCGGTACCGACCAGGAGGCGCTCAGTGTGCGCGGT
TCCGTCAGCTGGGTTGCTCCCGATGGCCAGACCTACACCCTGCACTACAT
TGCGGATGAGAACGGTTTCCAGCCCCAGGGCGATCATCTGCCCCACAACG
CAAGCTTTCTAGACC
BO14089.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32405-PA | 336 | CG32405-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
CG8505-PA | 405 | CG8505-RA | 289..327 | 305..343 | 170 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Av-RA | 642 | CG32405-RA | 112..446 | 15..349 | 1675 | 100 | Plus |
Cpr65Ax1-RA | 389 | CG34270-RA | 190..339 | 194..343 | 225 | 77.5 | Plus |
Cpr65Ax2-RB | 732 | CG18777-RB | 189..338 | 194..343 | 225 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6139419..6139610 | 349..158 | 945 | 99.5 | Minus |
3L | 28110227 | 3L | 6139716..6139863 | 162..15 | 740 | 100 | Minus |
3L | 28110227 | 3L | 6147581..6147730 | 343..194 | 225 | 76.7 | Minus |
3L | 28110227 | 3L | 6150452..6150601 | 343..194 | 225 | 76.7 | Minus |
3L | 28110227 | 3L | 6145138..6145289 | 192..343 | 205 | 75.7 | Plus |
3L | 28110227 | 3L | 6152287..6152379 | 343..251 | 195 | 80.6 | Minus |
3L | 28110227 | 3L | 6133172..6133243 | 343..272 | 180 | 83.3 | Minus |
3L | 28110227 | 3L | 6134853..6134924 | 343..272 | 180 | 83.3 | Minus |
2R | 25286936 | 2R | 12404317..12404355 | 305..343 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:35:14 has no hits.
BO14089.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:50 Download gff for
BO14089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32405-PA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:06 Download gff for
BO14089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32405-PA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:32:21 Download gff for
BO14089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 112..456 | 15..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:46 Download gff for
BO14089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 112..456 | 15..359 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:46 Download gff for
BO14089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6139409..6139605 | 163..359 | 97 | <- | Minus |
3L | 6139716..6139863 | 15..162 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:32:21 Download gff for
BO14089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6132509..6132705 | 163..359 | 97 | <- | Minus |
arm_3L | 6132816..6132963 | 15..162 | 100 | | Minus |
BO14089.complete Sequence
367 bp assembled on 2006-10-11
GenBank Submission: FJ633023
> BO14089.complete
GAAGTTATCAGTCGACATGCAGTCCTCCAGCATCTGTGTCCTGGCCATTT
GCGCCTTCGCTCTGCTCTCCACCATTAGGGCTGCTCCTCTGGACGACTCC
CAACATGCCACCATACTAAGATACGACAACGACAACATTGGCACTGATGG
CTACAACTTCGGCTACGAGACCAGTGATGGAGTTACCCGCCAGGAGCAGG
CTGAGGTGAAGAACGCCGGTACCGACCAGGAGGCGCTCAGTGTGCGCGGT
TCCGTCAGCTGGGTTGCTCCCGATGGCCAGACCTACACCCTGCACTACAT
TGCGGATGAGAACGGTTTCCAGCCCCAGGGCGATCATCTGCCCCACAACG
CAAGCTTTCTAGACCAT
BO14089.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Av-RA | 336 | CG32405-PA | 1..333 | 17..349 | 1665 | 100 | Plus |
Cpr65Ax1-RA | 309 | CG34270-PA | 142..291 | 194..343 | 225 | 76.7 | Plus |
Cpr65Ax2-RB | 309 | CG18777-PB | 142..291 | 194..343 | 225 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Av-RA | 642 | CG32405-RA | 112..446 | 15..349 | 1675 | 100 | Plus |
Cpr65Ax1-RA | 389 | CG34270-RA | 190..339 | 194..343 | 225 | 76.7 | Plus |
Cpr65Ax2-RB | 732 | CG18777-RB | 189..338 | 194..343 | 225 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6139419..6139610 | 349..158 | 945 | 99.5 | Minus |
3L | 28110227 | 3L | 6139716..6139863 | 162..15 | 740 | 100 | Minus |
3L | 28110227 | 3L | 6147581..6147730 | 343..194 | 225 | 76.7 | Minus |
3L | 28110227 | 3L | 6150452..6150601 | 343..194 | 225 | 76.7 | Minus |
3L | 28110227 | 3L | 6145138..6145289 | 192..343 | 205 | 75.7 | Plus |
3L | 28110227 | 3L | 6152287..6152379 | 343..251 | 195 | 80.6 | Minus |
3L | 28110227 | 3L | 6133172..6133243 | 343..272 | 180 | 83.3 | Minus |
3L | 28110227 | 3L | 6134853..6134924 | 343..272 | 180 | 83.3 | Minus |
2R | 25286936 | 2R | 12404317..12404355 | 305..343 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:25:06 has no hits.
BO14089.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:47 Download gff for
BO14089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:42 Download gff for
BO14089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 111..455 | 15..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:51 Download gff for
BO14089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 114..446 | 17..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:47 Download gff for
BO14089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 111..455 | 15..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:13 Download gff for
BO14089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Av-RA | 114..446 | 17..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:13 Download gff for
BO14089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6139716..6139861 | 17..162 | 100 | | Minus |
3L | 6139417..6139605 | 163..351 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:51 Download gff for
BO14089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6132517..6132705 | 163..351 | 98 | <- | Minus |
arm_3L | 6132816..6132961 | 17..162 | 100 | | Minus |
BO14089.pep Sequence
Translation from 16 to 367
> BO14089.pep
MQSSSICVLAICAFALLSTIRAAPLDDSQHATILRYDNDNIGTDGYNFGY
ETSDGVTRQEQAEVKNAGTDQEALSVRGSVSWVAPDGQTYTLHYIADENG
FQPQGDHLPHNASFLDH
BO14089.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Av-PA | 111 | CG32405-PA | 1..111 | 1..111 | 587 | 100 | Plus |
Acp65Aa-PA | 105 | CG10297-PA | 5..104 | 8..109 | 293 | 52.4 | Plus |
Lcp65Ac-PA | 109 | CG6956-PA | 3..104 | 7..110 | 289 | 55.8 | Plus |
Cpr65Aw-PA | 117 | CG32404-PA | 11..104 | 16..109 | 287 | 54.3 | Plus |
Cpr65Ax1-PA | 102 | CG34270-PA | 4..97 | 10..109 | 268 | 54 | Plus |