Clone BO14090 Report

Search the DGRC for BO14090

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:140
Well:90
Vector:pDNR-Dual
Associated Gene/Transcriptmmy-RB
Protein status:BO14090.pep: Imported from assembly
Sequenced Size:1483

Clone Sequence Records

BO14090.5prime Sequence

748 bp (647 high quality bases) assembled on 2006-05-29

> BO14090.5prime
GAAGTTATCAGTCGACATGACGGACTACCTGTCGCTGCACTCGCGACTCG
CCCAGGTGGGCCAGGAGCACCTGCTCAAGTTCTGGCCGGAACTAACGAAT
GACGAACGCATCGACCTGGTGCGGGACATCGAGGAGCTGAATCTGGACGA
GATCAAGCTGTATTTCGACCGCGCCACGGTCTCAATGAACGAGAATGGCA
TCAAGCTGGACGATCGCCTGCAGCCGCTGCCCGAGGGCAAGCTAATCTCC
ATTGCCAGGGCGCCGCTGGAGAAATTGGACGCCTACCGAGACGAGGGTCT
CCTCCAGATCAGCAACGGACATGTCGCTGTGCTGCTTATGGCAGGCGGAC
AAGGCACACGACTTGGCTTCGATCATCCCAAGGGAATGTACGATGTGGGA
CTGCAGTCTCGAAAGACCCTGTTCCGCATTCAGGCCGAGCGAATCCTGAA
GCTGGAGGAGCTCGCCCAAGAGGCGAATGGAAAACGTGGACACATCACTT
GGTACATCATGACGTCGGAGCACACGGTGCAACCCACATACGACTACTTT
GTGGCCAATAACTTCTTTGGCCTGAAGGCGGAGAACGTACTGTTGTTCGA
GCAGGGATCACTGCCGTGCTTTGAATACGATGGACGCATCATTCTGGACG
AAAAGCATCGGGTGGCGCGTGCGCCGGACGGCAACGGAGGAATCTATCGG
GCTATGAAGCGCCAGGGGGATCTGGACGATATGCAGAAGCGTGGTGTC

BO14090.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9535-PA 1563 CG9535-RA 112..843 17..748 3610 99.7 Plus
CG9535-PB 1452 CG9535-RB 1..732 17..748 3610 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
mmy-RB 1921 CG9535-RB 163..894 17..748 3630 99.7 Plus
mmy-RA 2030 CG9535-RA 325..1056 17..748 3630 99.7 Plus
mmy-RD 2064 CG9535-RD 306..1037 17..748 3630 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6469565..6469961 748..352 1955 99.5 Minus
2L 23513712 2L 6471327..6471664 354..17 1690 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:37:26 has no hits.

BO14090.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:51 Download gff for BO14090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9535-PB 1..732 17..748 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:07 Download gff for BO14090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9535-PB 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:09 Download gff for BO14090.5prime
Subject Subject Range Query Range Percent Splice Strand
mmy-RD 297..1037 8..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:42:47 Download gff for BO14090.5prime
Subject Subject Range Query Range Percent Splice Strand
mmy-RD 297..1037 8..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:42:47 Download gff for BO14090.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6469565..6469959 354..748 99 <- Minus
2L 6471328..6471669 13..353 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:09 Download gff for BO14090.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6469565..6469959 354..748 99 <- Minus
arm_2L 6471328..6471669 13..353 99 -> Minus

BO14090.complete Sequence

1483 bp assembled on 2008-08-14

GenBank Submission: FJ633024

> BO14090.complete
GAAGTTATCAGTCGACATGACGGACTACCTGTCGCTGCACTCGCGACTCG
CCCAGGTGGGCCAGGAGCACCTGCTCAAGTTCTGGCCGGAACTAACGAAT
GACGAACGCATCGACCTGGTGCGGGACATCGAGGAGCTGAATCTGGACGA
GATCAAGCTGTATTTCGACCGCGCCACGGTCTCAATGAACGAGAATGGCA
TCAAGCTGGACGATCGCCTGCAGCCGCTGCCCGAGGGCAAGCTAATCTCC
ATTGCCAGGGCGCCGCTGGAGAAATTGGACGCCTACCGAGACGAGGGTCT
CCTCCAGATCAGCAACGGACATGTCGCTGTGCTGCTTATGGCAGGCGGAC
AAGGCACACGACTTGGCTTCGATCATCCCAAGGGAATGTACGATGTGGGA
CTGCAGTCTCGAAAGACCCTGTTCCGCATTCAGGCCGAGCGAATCCTGAA
GCTGGAGGAGCTCGCCCAAGAGGCGAATGGAAAACGTGGACACATCACTT
GGTACATCATGACGTCGGAGCACACGGTGCAACCCACATACGACTACTTT
GTGGCCAATAACTTCTTTGGCCTGAAGGCGGAGAACGTACTGTTGTTCGA
GCAGGGATCACTGCCGTGCTTTGAATACGATGGACGCATCATTCTGGACG
AAAAGCATCGGGTGGCGCGTGCGCCGGACGGCAACGGAGGAATCTATCGG
GCTATGAAGCGCCAGGGGATTCTGGACGATATGCAGAAGCGTGGTGTCTT
ATATCTGCATGCCCATAGCGTGGACAACATCCTGATCAAGGTGGCCGATC
CCGTTTTTATCGGCTACTGCGTGCAGGAGAAGGCCGACTGCGCCGCTAAG
GTGGTGGAGAAGGCAGCTCCCAACGAGGCTGTGGGCGTGGTGGCCATTGT
CGATGGCAAATACCAGGTGGTGGAGTACAGCGAAATCTCGGCCAAAACAG
CCGAGATGCGCAATTCAGACGGCAGGCTGACCTTCAGTGCTGGCAACATT
TGCAATCACTTCTTCAGCTCGAACTTCCTGCAGAAGATTGGCAGCACATA
CGAGCAGGAGCTGAAGCTGCACGTGGCCAAGAAGAAGATTCCCTTCGTGG
ACAACGCCGGCAAGCGTCTAACGCCCGACAAGCCGAACGGCATCAAGATA
GAGAAGTTTGTCTTTGACGTCTTCGAGTTCGCCCAGAAGTTCGTGGCCAT
GGAAGTGCCACGCGACGAAGAGTTCAGCGCGCTAAAGAACTCCGATGCAG
CTGGCAAGGATTGCCCCAGTACTGCCCGCTCGGACCTCCATCGCCTGCAC
AAGAAGTATATCGAAGGCGCCGGTGGCATTGTGCATGGCGAAGTCTGCGA
GATCTCGCCCTTCGTCACCTACGCCGGCGAGAATCTCGCCTCGCATGTGG
AGGGCAAGTCGTTCACCAGTCCCGTCTACCTGCGGGACAGCCGCGATCCC
TTGCACGGACACCTTGCAAGCTTTCTAGACCAT

BO14090.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
mmy-RB 1452 CG9535-PB 1..1449 17..1465 7245 100 Plus
mmy-RA 1563 CG9535-PA 112..1560 17..1465 7245 100 Plus
mmy-RD 1452 CG9535-PD 1..1449 17..1465 7245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
mmy-RB 1921 CG9535-RB 163..1611 17..1465 7245 100 Plus
mmy-RA 2030 CG9535-RA 325..1773 17..1465 7245 100 Plus
mmy-RD 2064 CG9535-RD 306..1754 17..1465 7245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6468848..6469961 1465..352 5570 100 Minus
2L 23513712 2L 6471327..6471664 354..17 1690 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:19:10 has no hits.

BO14090.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:43 Download gff for BO14090.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RB 152..1613 8..1470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:58 Download gff for BO14090.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RD 306..1754 17..1467 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:18 Download gff for BO14090.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RB 161..1609 17..1467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:12 Download gff for BO14090.complete
Subject Subject Range Query Range Percent Splice Strand
mmy-RD 306..1754 17..1467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:12 Download gff for BO14090.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6468846..6469959 354..1467 99 <- Minus
2L 6471328..6471664 17..353 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:58 Download gff for BO14090.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6468846..6469959 354..1467 99 <- Minus
arm_2L 6471328..6471664 17..353 100   Minus

BO14090.pep Sequence

Translation from 16 to 1483

> BO14090.pep
MTDYLSLHSRLAQVGQEHLLKFWPELTNDERIDLVRDIEELNLDEIKLYF
DRATVSMNENGIKLDDRLQPLPEGKLISIARAPLEKLDAYRDEGLLQISN
GHVAVLLMAGGQGTRLGFDHPKGMYDVGLQSRKTLFRIQAERILKLEELA
QEANGKRGHITWYIMTSEHTVQPTYDYFVANNFFGLKAENVLLFEQGSLP
CFEYDGRIILDEKHRVARAPDGNGGIYRAMKRQGILDDMQKRGVLYLHAH
SVDNILIKVADPVFIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGKYQ
VVEYSEISAKTAEMRNSDGRLTFSAGNICNHFFSSNFLQKIGSTYEQELK
LHVAKKKIPFVDNAGKRLTPDKPNGIKIEKFVFDVFEFAQKFVAMEVPRD
EEFSALKNSDAAGKDCPSTARSDLHRLHKKYIEGAGGIVHGEVCEISPFV
TYAGENLASHVEGKSFTSPVYLRDSRDPLHGHLASFLDH

BO14090.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
mmy-PB 483 CG9535-PB 1..483 1..483 2512 100 Plus
mmy-PA 520 CG9535-PA 38..520 1..483 2512 100 Plus
mmy-PD 483 CG9535-PD 1..483 1..483 2512 100 Plus