Clone Sequence Records
BO14090.5prime Sequence
748 bp (647 high quality bases) assembled on 2006-05-29
> BO14090.5prime
GAAGTTATCAGTCGACATGACGGACTACCTGTCGCTGCACTCGCGACTCG
CCCAGGTGGGCCAGGAGCACCTGCTCAAGTTCTGGCCGGAACTAACGAAT
GACGAACGCATCGACCTGGTGCGGGACATCGAGGAGCTGAATCTGGACGA
GATCAAGCTGTATTTCGACCGCGCCACGGTCTCAATGAACGAGAATGGCA
TCAAGCTGGACGATCGCCTGCAGCCGCTGCCCGAGGGCAAGCTAATCTCC
ATTGCCAGGGCGCCGCTGGAGAAATTGGACGCCTACCGAGACGAGGGTCT
CCTCCAGATCAGCAACGGACATGTCGCTGTGCTGCTTATGGCAGGCGGAC
AAGGCACACGACTTGGCTTCGATCATCCCAAGGGAATGTACGATGTGGGA
CTGCAGTCTCGAAAGACCCTGTTCCGCATTCAGGCCGAGCGAATCCTGAA
GCTGGAGGAGCTCGCCCAAGAGGCGAATGGAAAACGTGGACACATCACTT
GGTACATCATGACGTCGGAGCACACGGTGCAACCCACATACGACTACTTT
GTGGCCAATAACTTCTTTGGCCTGAAGGCGGAGAACGTACTGTTGTTCGA
GCAGGGATCACTGCCGTGCTTTGAATACGATGGACGCATCATTCTGGACG
AAAAGCATCGGGTGGCGCGTGCGCCGGACGGCAACGGAGGAATCTATCGG
GCTATGAAGCGCCAGGGGGATCTGGACGATATGCAGAAGCGTGGTGTC
BO14090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9535-PA | 1563 | CG9535-RA | 112..843 | 17..748 | 3610 | 99.7 | Plus |
CG9535-PB | 1452 | CG9535-RB | 1..732 | 17..748 | 3610 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mmy-RB | 1921 | CG9535-RB | 163..894 | 17..748 | 3630 | 99.7 | Plus |
mmy-RA | 2030 | CG9535-RA | 325..1056 | 17..748 | 3630 | 99.7 | Plus |
mmy-RD | 2064 | CG9535-RD | 306..1037 | 17..748 | 3630 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6469565..6469961 | 748..352 | 1955 | 99.5 | Minus |
2L | 23513712 | 2L | 6471327..6471664 | 354..17 | 1690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:37:26 has no hits.
BO14090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:51 Download gff for
BO14090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9535-PB | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:07 Download gff for
BO14090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9535-PB | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:09 Download gff for
BO14090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mmy-RD | 297..1037 | 8..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:42:47 Download gff for
BO14090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mmy-RD | 297..1037 | 8..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:42:47 Download gff for
BO14090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6469565..6469959 | 354..748 | 99 | <- | Minus |
2L | 6471328..6471669 | 13..353 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:09 Download gff for
BO14090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6469565..6469959 | 354..748 | 99 | <- | Minus |
arm_2L | 6471328..6471669 | 13..353 | 99 | -> | Minus |
BO14090.complete Sequence
1483 bp assembled on 2008-08-14
GenBank Submission: FJ633024
> BO14090.complete
GAAGTTATCAGTCGACATGACGGACTACCTGTCGCTGCACTCGCGACTCG
CCCAGGTGGGCCAGGAGCACCTGCTCAAGTTCTGGCCGGAACTAACGAAT
GACGAACGCATCGACCTGGTGCGGGACATCGAGGAGCTGAATCTGGACGA
GATCAAGCTGTATTTCGACCGCGCCACGGTCTCAATGAACGAGAATGGCA
TCAAGCTGGACGATCGCCTGCAGCCGCTGCCCGAGGGCAAGCTAATCTCC
ATTGCCAGGGCGCCGCTGGAGAAATTGGACGCCTACCGAGACGAGGGTCT
CCTCCAGATCAGCAACGGACATGTCGCTGTGCTGCTTATGGCAGGCGGAC
AAGGCACACGACTTGGCTTCGATCATCCCAAGGGAATGTACGATGTGGGA
CTGCAGTCTCGAAAGACCCTGTTCCGCATTCAGGCCGAGCGAATCCTGAA
GCTGGAGGAGCTCGCCCAAGAGGCGAATGGAAAACGTGGACACATCACTT
GGTACATCATGACGTCGGAGCACACGGTGCAACCCACATACGACTACTTT
GTGGCCAATAACTTCTTTGGCCTGAAGGCGGAGAACGTACTGTTGTTCGA
GCAGGGATCACTGCCGTGCTTTGAATACGATGGACGCATCATTCTGGACG
AAAAGCATCGGGTGGCGCGTGCGCCGGACGGCAACGGAGGAATCTATCGG
GCTATGAAGCGCCAGGGGATTCTGGACGATATGCAGAAGCGTGGTGTCTT
ATATCTGCATGCCCATAGCGTGGACAACATCCTGATCAAGGTGGCCGATC
CCGTTTTTATCGGCTACTGCGTGCAGGAGAAGGCCGACTGCGCCGCTAAG
GTGGTGGAGAAGGCAGCTCCCAACGAGGCTGTGGGCGTGGTGGCCATTGT
CGATGGCAAATACCAGGTGGTGGAGTACAGCGAAATCTCGGCCAAAACAG
CCGAGATGCGCAATTCAGACGGCAGGCTGACCTTCAGTGCTGGCAACATT
TGCAATCACTTCTTCAGCTCGAACTTCCTGCAGAAGATTGGCAGCACATA
CGAGCAGGAGCTGAAGCTGCACGTGGCCAAGAAGAAGATTCCCTTCGTGG
ACAACGCCGGCAAGCGTCTAACGCCCGACAAGCCGAACGGCATCAAGATA
GAGAAGTTTGTCTTTGACGTCTTCGAGTTCGCCCAGAAGTTCGTGGCCAT
GGAAGTGCCACGCGACGAAGAGTTCAGCGCGCTAAAGAACTCCGATGCAG
CTGGCAAGGATTGCCCCAGTACTGCCCGCTCGGACCTCCATCGCCTGCAC
AAGAAGTATATCGAAGGCGCCGGTGGCATTGTGCATGGCGAAGTCTGCGA
GATCTCGCCCTTCGTCACCTACGCCGGCGAGAATCTCGCCTCGCATGTGG
AGGGCAAGTCGTTCACCAGTCCCGTCTACCTGCGGGACAGCCGCGATCCC
TTGCACGGACACCTTGCAAGCTTTCTAGACCAT
BO14090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mmy-RB | 1452 | CG9535-PB | 1..1449 | 17..1465 | 7245 | 100 | Plus |
mmy-RA | 1563 | CG9535-PA | 112..1560 | 17..1465 | 7245 | 100 | Plus |
mmy-RD | 1452 | CG9535-PD | 1..1449 | 17..1465 | 7245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mmy-RB | 1921 | CG9535-RB | 163..1611 | 17..1465 | 7245 | 100 | Plus |
mmy-RA | 2030 | CG9535-RA | 325..1773 | 17..1465 | 7245 | 100 | Plus |
mmy-RD | 2064 | CG9535-RD | 306..1754 | 17..1465 | 7245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6468848..6469961 | 1465..352 | 5570 | 100 | Minus |
2L | 23513712 | 2L | 6471327..6471664 | 354..17 | 1690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:19:10 has no hits.
BO14090.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:43 Download gff for
BO14090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mmy-RB | 152..1613 | 8..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:58 Download gff for
BO14090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mmy-RD | 306..1754 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:18 Download gff for
BO14090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mmy-RB | 161..1609 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:12 Download gff for
BO14090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mmy-RD | 306..1754 | 17..1467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:12 Download gff for
BO14090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6468846..6469959 | 354..1467 | 99 | <- | Minus |
2L | 6471328..6471664 | 17..353 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:58 Download gff for
BO14090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6468846..6469959 | 354..1467 | 99 | <- | Minus |
arm_2L | 6471328..6471664 | 17..353 | 100 | | Minus |
BO14090.pep Sequence
Translation from 16 to 1483
> BO14090.pep
MTDYLSLHSRLAQVGQEHLLKFWPELTNDERIDLVRDIEELNLDEIKLYF
DRATVSMNENGIKLDDRLQPLPEGKLISIARAPLEKLDAYRDEGLLQISN
GHVAVLLMAGGQGTRLGFDHPKGMYDVGLQSRKTLFRIQAERILKLEELA
QEANGKRGHITWYIMTSEHTVQPTYDYFVANNFFGLKAENVLLFEQGSLP
CFEYDGRIILDEKHRVARAPDGNGGIYRAMKRQGILDDMQKRGVLYLHAH
SVDNILIKVADPVFIGYCVQEKADCAAKVVEKAAPNEAVGVVAIVDGKYQ
VVEYSEISAKTAEMRNSDGRLTFSAGNICNHFFSSNFLQKIGSTYEQELK
LHVAKKKIPFVDNAGKRLTPDKPNGIKIEKFVFDVFEFAQKFVAMEVPRD
EEFSALKNSDAAGKDCPSTARSDLHRLHKKYIEGAGGIVHGEVCEISPFV
TYAGENLASHVEGKSFTSPVYLRDSRDPLHGHLASFLDH
BO14090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mmy-PB | 483 | CG9535-PB | 1..483 | 1..483 | 2512 | 100 | Plus |
mmy-PA | 520 | CG9535-PA | 38..520 | 1..483 | 2512 | 100 | Plus |
mmy-PD | 483 | CG9535-PD | 1..483 | 1..483 | 2512 | 100 | Plus |