Clone Sequence Records
BO14092.3prime Sequence
649 bp (637 high quality bases) assembled on 2006-05-29
> BO14092.3prime
ATGGTCTAGAAAGCTTGCCTTGAAGATCTTGCCCTGGTTGAACTTGCGAC
CGTCCTTGTCGGTGCCGGACCAGGAGAAGTACTGGGTGACCAGCTTCTTG
GTCTCCTCGCTCTTGGCGTCGAGCTTCTTCCAGTCGTAGACCTCGTAGTC
GATCTGCCAGTCGGGGGAGAGCGTGAAGGCCAGATCCTGTCCGCGCCACA
CCCAGATACCGGAGATGGTGCTGTTGCCGTCCTCGCCGAACAGGCAAACG
GAGGCGAAGGCCGCCTTGCGCATCTTGTCCAGACGCTGGAACATGCCGGT
GATGAGATTGCACGACATGAACACCTTGGACAGCTCCTCGTTGTATTTGT
ACTCGCCAAACCAGATCGAGTAGTTCTCGGCATCGAACTTATCGAAGAAG
TAGGGAATGGACTTGGCCTCGTCCTCGTTGGAGTACACGCGCTTGAAGTC
ATCGAAGTTGAAGGTGCCCTTGGGCAGCGCATCGAAGGGGTCCTTGGACT
TGGGCTCGGCGGCCAGGGCCTCATCGGCGGCGTCCAACTCCTCGGCGGGC
TCGGCAGCCTTCTTGGGCGCCTCCTTCTTTTTCCTTTGGGCTTCTTCTCC
TGCTTCTGCTGCTGAGCCTGCTGCTGGGGCTTGGCGGCTTCCGGTCTTG
BO14092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11901-PB | 1296 | Ef1gamma-RB | 731..1293 | 581..19 | 2815 | 100 | Minus |
| CG11901-PA | 1296 | Ef1gamma-RA | 731..1293 | 581..19 | 2815 | 100 | Minus |
| CG11901-PB | 1296 | Ef1gamma-RB | 675..728 | 639..586 | 270 | 100 | Minus |
| CG11901-PA | 1296 | Ef1gamma-RA | 675..728 | 639..586 | 270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-RC | 1689 | CG11901-RC | 726..1353 | 649..19 | 3080 | 99.5 | Minus |
| Ef1gamma-RA | 1662 | CG11901-RA | 699..1326 | 649..19 | 3080 | 99.5 | Minus |
| Ef1gamma-RB | 1685 | CG11901-RB | 722..1349 | 649..19 | 3080 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29221155..29221773 | 639..19 | 3025 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:26:04 has no hits.
BO14092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:52 Download gff for
BO14092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11901-PA | 666..1296 | 15..649 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:09 Download gff for
BO14092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11901-PA | 666..1296 | 15..649 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:28 Download gff for
BO14092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 699..1329 | 15..649 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:55:36 Download gff for
BO14092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RB | 722..1352 | 15..649 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:55:36 Download gff for
BO14092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29221146..29221776 | 15..649 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:28 Download gff for
BO14092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25046868..25047498 | 15..649 | 99 | | Minus |
BO14092.5prime Sequence
680 bp (621 high quality bases) assembled on 2006-05-29
> BO14092.5prime
GAAGTTATCAGTCGACATGGTGAAAGGAACTCTGTACACTTACCCCGAGA
ACTTCCGGGCCTACAAGGCGCTCATCGCAGCCCAGTACTCCGGAGCCCAG
GTGAAAGTGGCCGACAACTTCAAGTTCGGCGAGACCAACAAGTCGGCTGA
GTTCCTCAAGAAGTTCCCCGGTGGCAAGGTACCCGCCTTTGAGACCGCCG
AAGGACAGTACTTGAGCGAGTCCAATGCCATCGCCTACCTGCTGGCCAAC
GAGCAGCTGCGCGGCGGAAAGTGCCCCTTCGTGCAGGCCCAGGTCCAGCA
GTGGATCTCCTTCGCCGACAACGAGATTGTGCCTGCCTCCTGTGCCTGGG
TCTTCCCCCTGCTGGGCATTCTGCCGCAGCAGAAGAACAGCACTGCCAAG
CAAGAGGCCGAGGCTGTGCTGCAGCAGCTCAACCAGAAGCTGCAGGACGC
CACCTTCCTGGCCGGCGAGAGGATCACATTGGCCGACATTGTGGTCTTCA
GCAGTCTGCTCCACCTGTACGAGTACGTCCTGGAGCCCAGTGTGCGCAGT
GCCTTCGGCAACGTGAACCGCTGGTTCGTCACCATCCTCCACCAGAAGCA
GGTCCAGGCCGTCGTCAAGGACTAACAGCTGTGCGAGAAGGCCCTGGTCT
TCGACCCCAAGAAGTACGCCCAGTTCCAGG
BO14092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11901-PB | 1296 | Ef1gamma-RB | 1..664 | 17..680 | 3195 | 99.2 | Plus |
| CG11901-PA | 1296 | Ef1gamma-RA | 1..664 | 17..680 | 3195 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-RC | 1689 | CG11901-RC | 60..724 | 16..680 | 3250 | 99.2 | Plus |
| Ef1gamma-RA | 1662 | CG11901-RA | 33..697 | 16..680 | 3250 | 99.2 | Plus |
| Ef1gamma-RB | 1685 | CG11901-RB | 56..720 | 16..680 | 3250 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29220641..29221144 | 177..680 | 2445 | 99 | Plus |
| 3R | 32079331 | 3R | 29220430..29220581 | 29..180 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:19:39 has no hits.
BO14092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:53 Download gff for
BO14092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11901-PA | 1..664 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:10 Download gff for
BO14092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11901-PA | 1..664 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:44:38 Download gff for
BO14092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 28..697 | 12..680 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:21:40 Download gff for
BO14092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RB | 51..720 | 12..680 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:21:40 Download gff for
BO14092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29220430..29220579 | 29..178 | 100 | -> | Plus |
| 3R | 29220643..29221144 | 179..680 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:44:38 Download gff for
BO14092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25046152..25046301 | 29..178 | 100 | -> | Plus |
| arm_3R | 25046365..25046866 | 179..680 | 99 | | Plus |
BO14092.complete Sequence
1327 bp assembled on 2008-11-10
GenBank Submission: KX796796
> BO14092.complete
GAAGTTATCAGTCGACATGGTGAAAGGAACTCTGTACACTTACCCCGAGA
ACTTCCGGGCCTACAAGGCGCTCATCGCAGCCCAGTACTCCGGAGCCCAG
GTGAAAGTGGCCGACAACTTCAAGTTCGGCGAGACCAACAAGTCGGCTGA
GTTCCTCAAGAAGTTCCCCGGTGGCAAGGTACCCGCCTTTGAGACCGCCG
AAGGACAGTACTTGAGCGAGTCCAATGCCATCGCCTACCTGCTGGCCAAC
GAGCAGCTGCGCGGCGGAAAGTGCCCCTTCGTGCAGGCCCAGGTCCAGCA
GTGGATCTCCTTCGCCGACAACGAGATTGTGCCTGCCTCCTGTGCCTGGG
TCTTCCCCCTGCTGGGCATTCTGCCGCAGCAGAAGAACAGCACTGCCAAG
CAAGAGGCCGAGGCTGTGCTGCAGCAGCTCAACCAGAAGCTGCAGGACGC
CACCTTCCTGGCCGGCGAGAGGATCACATTGGCCGACATTGTGGTCTTCA
GCAGTCTGCTCCACCTGTACGAGTACGTCCTGGAGCCCAGTGTGCGCAGT
GCCTTCGGCAACGTGAACCGCTGGTTCGTCACCATCCTCAACCAGAAGCA
GGTCCAGGCCGTCGTCAAGGACTACAAGCTGTGCGAGAAGGCCCTGGTCT
TCGACCCCAAGAAGTACGCCGAGTTCCAGGCCAAGACCGGAGCCGCCAAG
CCCCAGCAGCAGGCTCAGCAGCAGAAGCAGGAGAAGAAGCCCAAGGAAAA
GAAGGAGGCGCCCAAGAAGGCTGCCGAGCCCGCCGAGGAGTTGGACGCCG
CCGATGAGGCCCTGGCCGCCGAGCCCAAGTCCAAGGACCCCTTCGATGCG
CTGCCCAAGGGCACCTTCAACTTCGATGACTTCAAGCGCGTGTACTCCAA
CGAGGACGAGGCCAAGTCCATTCCCTACTTCTTCGATAAGTTCGATGCCG
AGAACTACTCGATCTGGTTTGGCGAGTACAAATACAACGAGGAGCTGTCC
AAGGTGTTCATGTCGTGCAATCTCATCACCGGCATGTTCCAGCGTCTGGA
CAAGATGCGCAAGGCGGCCTTCGCCTCCGTTTGCCTGTTCGGCGAGGACG
GCAACAGCACCATCTCCGGTATCTGGGTGTGGCGCGGACAGGATCTGGCC
TTCACGCTCTCCCCCGACTGGCAGATCGACTACGAGGTCTACGACTGGAA
GAAGCTCGACGCCAAGAGCGAGGAGACCAAGAAGCTGGTCACCCAGTACT
TCTCCTGGTCCGGCACCGACAAGGACGGTCGCAAGTTCAACCAGGGCAAG
ATCTTCAAGGCAAGCTTTCTAGACCAT
BO14092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-RC | 1296 | CG11901-PC | 1..1293 | 17..1309 | 6450 | 99.9 | Plus |
| Ef1gamma-RA | 1296 | CG11901-PA | 1..1293 | 17..1309 | 6450 | 99.9 | Plus |
| Ef1gamma-RB | 1296 | CG11901-PB | 1..1293 | 17..1309 | 6450 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-RC | 1689 | CG11901-RC | 60..1353 | 16..1309 | 6455 | 99.9 | Plus |
| Ef1gamma-RA | 1662 | CG11901-RA | 33..1326 | 16..1309 | 6455 | 99.9 | Plus |
| Ef1gamma-RB | 1685 | CG11901-RB | 56..1349 | 16..1309 | 6455 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29220641..29221773 | 177..1309 | 5650 | 99.9 | Plus |
| 3R | 32079331 | 3R | 29220430..29220581 | 29..180 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:03:46 has no hits.
BO14092.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:15:53 Download gff for
BO14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 83..1384 | 12..1313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:54 Download gff for
BO14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 34..1326 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:15 Download gff for
BO14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 89..1381 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:52 Download gff for
BO14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RB | 57..1349 | 17..1311 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:52 Download gff for
BO14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29220430..29220579 | 29..178 | 100 | -> | Plus |
| 3R | 29220643..29221773 | 179..1311 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:54 Download gff for
BO14092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25046152..25046301 | 29..178 | 100 | -> | Plus |
| arm_3R | 25046365..25047495 | 179..1311 | 99 | | Plus |
BO14092.pep Sequence
Translation from 16 to 1327
> BO14092.pep
MVKGTLYTYPENFRAYKALIAAQYSGAQVKVADNFKFGETNKSAEFLKKF
PGGKVPAFETAEGQYLSESNAIAYLLANEQLRGGKCPFVQAQVQQWISFA
DNEIVPASCAWVFPLLGILPQQKNSTAKQEAEAVLQQLNQKLQDATFLAG
ERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRWFVTILNQKQVQAVV
KDYKLCEKALVFDPKKYAEFQAKTGAAKPQQQAQQQKQEKKPKEKKEAPK
KAAEPAEELDAADEALAAEPKSKDPFDALPKGTFNFDDFKRVYSNEDEAK
SIPYFFDKFDAENYSIWFGEYKYNEELSKVFMSCNLITGMFQRLDKMRKA
AFASVCLFGEDGNSTISGIWVWRGQDLAFTLSPDWQIDYEVYDWKKLDAK
SEETKKLVTQYFSWSGTDKDGRKFNQGKIFKASFLDH
BO14092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-PC | 431 | CG11901-PC | 1..431 | 1..431 | 2255 | 100 | Plus |
| Ef1gamma-PA | 431 | CG11901-PA | 1..431 | 1..431 | 2255 | 100 | Plus |
| Ef1gamma-PB | 431 | CG11901-PB | 1..431 | 1..431 | 2255 | 100 | Plus |
