Clone Sequence Records
BO14093.3prime Sequence
651 bp (594 high quality bases) assembled on 2006-05-29
> BO14093.3prime
ATGGTCTAGAAAGCTTGCCGCCTCCACCGCTTCCTTGTTTTTGTTCTTCT
TTTTCTTCTTCTTCTTTGGCTCTCCATCATCGTTGCCATTGCCATTTTCC
GCCTCGGCGGCTGCTCCGTTTCCATTACTGGCGCCATTCGTCTCGCCCTC
GTCTTCAGCCGCTCGCTTCTTCTTTTTCTTCTTTTTCTCGGACTGTACAG
TGATTGCCGCCTCTTGACCAGCTGCCTCGATGGCCTCCTTCATTACCTCA
ATGTTCTTGCGCGGCACATCGCCGGACTCGTAGAACTTGAGGCGATCTTC
GACCTGTTGCTTAAGAGTTTCGCCAAACACGCTAGTCGGCTGTTCCAGGA
AGCAATCGATACGCGACGCGATGGAGCACTTGTTGGCCAGGAATCGAGAG
ATGCGACCCTTGTTCTTCAGGCCAGCTCGACCAATGAACGAGGAGTGATA
GATAAGACCATACTTGGGCGTATTGGAGCGGGTCTTTAAAGCACGGAAGA
GCGCCTTCTCGGCACCCAGGATTTGTACTGTAGATGCTGGGTACTTGGCC
AGATTAATCAAGCTGCCGGCATGCGATATCAGGCGGGCACCGACCTGTTC
GCCAATCAAAGACTGCAGATTGGGTGCCACCAAGTTCATCTTGTTGTGCA
A
BO14093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13849-PA | 1491 | Nop56-RA | 856..1488 | 651..19 | 3090 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-RA | 1746 | CG13849-RA | 968..1600 | 651..19 | 3120 | 99.5 | Minus |
| nop5-RA | 1813 | CG10206-RA | 1015..1202 | 594..407 | 220 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22419241..22419873 | 19..651 | 3120 | 99.5 | Plus |
| 2L | 23513712 | 2L | 6917542..6917729 | 407..594 | 220 | 74.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:46:54 has no hits.
BO14093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:54 Download gff for
BO14093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-PA | 858..1491 | 15..649 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:11 Download gff for
BO14093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13849-PA | 858..1491 | 15..649 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:36 Download gff for
BO14093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 970..1603 | 15..649 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:25:07 Download gff for
BO14093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 970..1603 | 15..649 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:25:07 Download gff for
BO14093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22419237..22419871 | 15..649 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:36 Download gff for
BO14093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18244959..18245593 | 15..649 | 99 | | Plus |
BO14093.5prime Sequence
744 bp (603 high quality bases) assembled on 2006-05-29
> BO14093.5prime
GAAGTTATCAGTCGACATGTCGAACCTGTATGTGCTGTACGAGCATGCGG
CGGGCTTCTCGCTCTTCTCCGTCAAGGAGTTCGAAGAGGTGTCCATGTTC
CTGCCCCAGGTGGAGTCCTCGGTGACGGACCTCGCCAAGTTCAACTCAAT
TGTTAAGCTGGCTGGATTTGCACCTTTCAAGACGGCCATTGCCGCACTGG
AAAACATCAATGCCATATCCGAGGGCATAGTGCCGCAGGATCTGCTCTCC
TTCTTGGATGACTTCTTTGCCAAGCTGAAGAAGAAGAAGTGCACCCTGGG
TATTGCGGATGCCAAGCTGGGAGCTGCAATCACCGAGGCCATTGGCGTCC
AGTGCAGTCACTTTGGAGTGGTTCCTGAGATTCTGCGCGGCGTGCGATTC
CACTTCGCTAAGCTGGTCAAGGGATTCACCGACAAGTCCGCTGGCGTTGC
TCAGCTGGGTCTGGGCCACAGCTACTCGCGTGCCAAGGTCAAGTTCAATG
TTCATCGTTCCGACAACATGATCATCCAGTCGATTGCTTTGCTGGATCAG
TTGGATAAGGACGTAAATACCTTCTCTATGCGGATACGCGAGTGGTACTC
GTATCACTTCCCAGAACTGGTCAAAATCGTTCCCGACAATTTAATGTTCG
CCAAGGCGGCCAAGTTCATCAAGGATCGCAAGAACCTCACGCCAGACCAG
CTTGGAGATCTTGGAAAAATCGTCATGGACTCCGCCAAGGGTCA
BO14093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13849-PA | 1491 | Nop56-RA | 1..686 | 17..702 | 3355 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-RA | 1746 | CG13849-RA | 110..840 | 14..744 | 3505 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22420387..22420791 | 423..19 | 2025 | 100 | Minus |
| 3R | 32079331 | 3R | 22420001..22420323 | 744..422 | 1465 | 96.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:13:56 has no hits.
BO14093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:18:55 Download gff for
BO14093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-PA | 1..727 | 17..743 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:13 Download gff for
BO14093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13849-PA | 1..727 | 17..743 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:34 Download gff for
BO14093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..839 | 9..743 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:38 Download gff for
BO14093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..839 | 9..743 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:38 Download gff for
BO14093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22420002..22420322 | 423..743 | 97 | <- | Minus |
| 3R | 22420388..22420795 | 12..422 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:34 Download gff for
BO14093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18245724..18246044 | 423..743 | 97 | <- | Minus |
| arm_3R | 18246110..18246517 | 12..422 | 99 | | Minus |
BO14093.complete Sequence
1522 bp assembled on 2008-08-14
> BO14093.complete
GAAGTTATCAGTCGACATGTCGAACCTGTATGTGCTGTACGAGCATGCGG
CGGGCTTCTCGCTCTTCTCCGTCAAGGAGTTCGAAGAGGTGTCCATGTTC
CTGCCCCAGGTGGAGTCCTCGGTGACGGACCTCGCCAAGTTCAACTCAAT
TGTTAAGCTGGCTGGATTTGCACCTTTCAAGACGGCCATTGCCGCACTGG
AAAACATCAATGCCATATCCGAGGGCATAGTGCCGCAGGATCTGCTCTCC
TTCTTGGATGACTTCTTTGCCAAGCTGAAGAAGAAGAAGTGCACCCTGGG
TATTGCGGATGCCAAGCTGGGAGCTGCAATCACCGAGGCCATTGGCGTCC
AGTGCAGTCACTTTGGAGTGGTTCCTGAGATTCTGCGCGGCGTGCGATTC
CACTTCGCTAAGCTGGTCAAGGGATTCACCGACAAGTCCGCTGGCGTTGC
TCAGCTGGGTCTGGGCCACAGCTACTCGCGTGCCAAGGTCAAGTTCAATG
TTCATCGTTCCGACAACATGATCATCCAGTCGATTGCTTTGCTGGATCAG
TTGGATAAGGACGTAAATACCTTCTCTATGCGGATACGCGAGTGGTACTC
GTATCACTTCCCAGAACTGGTCAAAATCGTTCCCGACAATTACATGTTCG
CCAAGGCGGCCAAGTTCATCAAGGATCGCAAGAACCTCACGCAAGACCAG
CTGGAGGATCTTGAGAAGATCGTCATGGACTCCGCCAAGGCTCAGGCTAT
CATTGGTGCCGCCAAGATGTCCATGGGCATGGACATCTCCATTGTTGATC
TGATGAACATTGAGCTGTTCGCAGAGCGCGTTGTCAAGCTTTCCGAGTAC
CGAAAGAAACTGTCTACCTACTTGCACAACAAGATGAACTTGGTGGCACC
CAATCTGCAGTCTTTGATTGGCGACCAGGTCGGTGCCCGCCTGATATCGC
ATGCCGGCAGCTTGACTAATCTGGCCAAGTACCCAGCATCTACAGTACAA
ATCCTGGGTGCCGAGAAGGCGCTCTTCCGTGCTCTAAAGACCCGCTCCAA
TACGCCCAAGTATGGTCTTATCTATCACTCCTCGTTCATTGGTCGAGCTG
GCCTGAAGAACAAGGGTCGCATCTCTCGATTCCTGGCCAACAAGTGCTCC
ATCGCGTCGCGTATCGATTGCTTCCTGGAACAGCCGACTAGCGTGTTTGG
CGAAACTCTTAAGCAACAGGTCGAAGATCGCCTCAAGTTCTACGAGTCCG
GCGATGTGCCGCGCAAGAACATTGAGGTAATGAAGGAGGCCATCGAGGCA
GCTGGTCAAGAGGCGGCAATCACTGTACAGTCCGAGAAAAAGAAGAAAAA
GAAGAAGCGAGCGGCTGAAGACGAGGGCGAGACGAATGGCGCCAGTAATG
GAAACGGAGCAGCCGCCGAGGCGGAAAATGGCAATGGCAACGATGATGGA
GAGCCAAAGAAGAAGAAGAAAAAGAAGAACAAAAACAAGGAAGCGGTGGA
GGCGGCAAGCTTTCTAGACCAT
BO14093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-RA | 1491 | CG13849-PA | 1..1488 | 17..1504 | 7425 | 99.9 | Plus |
| nop5-RA | 1536 | CG10206-PA | 883..1070 | 929..1116 | 220 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-RA | 1746 | CG13849-RA | 110..1600 | 14..1504 | 7440 | 99.9 | Plus |
| nop5-RA | 1813 | CG10206-RA | 1015..1202 | 929..1116 | 220 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22419241..22420323 | 1504..422 | 5400 | 99.9 | Minus |
| 3R | 32079331 | 3R | 22420387..22420791 | 423..19 | 2025 | 100 | Minus |
| 2L | 23513712 | 2L | 6917542..6917729 | 1116..929 | 220 | 74.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:59:59 has no hits.
BO14093.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:36 Download gff for
BO14093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1603 | 9..1508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:49 Download gff for
BO14093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 113..1600 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:19 Download gff for
BO14093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 113..1600 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:39 Download gff for
BO14093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 113..1600 | 17..1506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:39 Download gff for
BO14093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22419239..22420322 | 423..1506 | 99 | <- | Minus |
| 3R | 22420388..22420792 | 17..422 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:49 Download gff for
BO14093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18244961..18246044 | 423..1506 | 99 | <- | Minus |
| arm_3R | 18246110..18246514 | 17..422 | 99 | | Minus |
BO14093.pep Sequence
Translation from 16 to 1522
> BO14093.pep
MSNLYVLYEHAAGFSLFSVKEFEEVSMFLPQVESSVTDLAKFNSIVKLAG
FAPFKTAIAALENINAISEGIVPQDLLSFLDDFFAKLKKKKCTLGIADAK
LGAAITEAIGVQCSHFGVVPEILRGVRFHFAKLVKGFTDKSAGVAQLGLG
HSYSRAKVKFNVHRSDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPE
LVKIVPDNYMFAKAAKFIKDRKNLTQDQLEDLEKIVMDSAKAQAIIGAAK
MSMGMDISIVDLMNIELFAERVVKLSEYRKKLSTYLHNKMNLVAPNLQSL
IGDQVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYG
LIYHSSFIGRAGLKNKGRISRFLANKCSIASRIDCFLEQPTSVFGETLKQ
QVEDRLKFYESGDVPRKNIEVMKEAIEAAGQEAAITVQSEKKKKKKKRAA
EDEGETNGASNGNGAAAEAENGNGNDDGEPKKKKKKKNKNKEAVEAASFL
DH
BO14093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-PA | 496 | CG13849-PA | 1..496 | 1..496 | 2481 | 99.8 | Plus |
| nop5-PA | 511 | CG10206-PA | 1..490 | 4..498 | 850 | 40.1 | Plus |
| Prp31-PA | 501 | CG6876-PA | 100..378 | 168..453 | 262 | 24.3 | Plus |
