Clone Sequence Records
BO14115.5prime Sequence
676 bp (507 high quality bases) assembled on 2006-05-29
> BO14115.5prime
GAAGTTATCAGTCGACATGGCCCACTACAAAGGTGCCGCCAGCGAGGCGG
GCCGTGCAGCCCAGCTGATGAAGAAGCGGGAGATCCAGCAGCAGGAGATC
GAGTTTCGCAAGAAGAAGATCGAGGAGGAGCTCAAGCTGGACAAGATTGA
GAACAAGTTTGCCACCCACTACGATGCCGTGGAGCAGCAGCTCAAGTCCT
CGACCATTGGTCTGGTCACCCTCGACGAGATGAAGGCCAAGCAGGAGGAT
ATAGTGCGGGAACGGGAGAAGAAGCTCGCCCAGAAGAAGGACGAAAAGGA
TCGGGAGAAGCAGCGCGCCCTGGAGGCCATTCAGGCGGAGAAGAACAAGC
AGAAGCGGCAGATCCAGGCGCTGTCCTTCAACCTGGACGACGACGAGGAG
GAGGAGGAGGAGGACGACGAGGATCACGATAAGAAACAGCTGAGGATTAA
GCAGGAGGATCAGCCCAAGCCCAAGTGGACGGAGATCCAGGGAAGACATT
TTGCCCATAAAGAAGAAGAAGATATGCAAGAATCCTGACGTGGACCCTTC
CTTTCTGCCAGATCGCGAGCGCGAGGAGCAGGAGAACAGACTGCGCGAGC
AGCTGCGTCAAGATTGGGTAATGCAGCAGGCGGAGCTGAAGGACGAGGAC
CTCTCCATCACGTTTCCGCTACTTGG
BO14115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-PA | 1080 | CG12259-RA | 1..471 | 17..487 | 2330 | 99.7 | Plus |
| CG12259-PA | 1080 | CG12259-RA | 474..647 | 491..664 | 795 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-RA | 1246 | CG12259-RA | 96..750 | 17..673 | 3145 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27920348..27920994 | 664..17 | 3115 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:14:08 has no hits.
BO14115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:12 Download gff for
BO14115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-PA | 1..657 | 17..676 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:36 Download gff for
BO14115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-PA | 1..657 | 17..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:42:56 Download gff for
BO14115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 93..752 | 10..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:35 Download gff for
BO14115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 93..752 | 10..676 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:35 Download gff for
BO14115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27920337..27920997 | 10..676 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:42:56 Download gff for
BO14115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23746059..23746719 | 10..676 | 98 | | Minus |
BO14115.complete Sequence
1111 bp assembled on 2008-11-10
GenBank Submission: KX795746
> BO14115.complete
GAAGTTATCAGTCGACATGGCCCACTACAAAGGTGCCGCCAGCGAGGCGG
GCCGTGCAGCCCAGCTGATGAAGAAGCGGGAGATCCAGCAGCAGGAGATC
GAGTTTCGCAAGAAGAAGATCGAGGAGGAGCTCAAGCTGGACAAGATTGA
GAACAAGTTTGCCACCCACTACGATGCCGTGGAGCAGCAGCTCAAGTCCT
CGACCATTGGTCTGGTCACCCTCGACGAGATGAAGGCCAAGCAGGAGGAT
ATAGTGCGGGAACGGGAGAAGAAGCTCGCCCAGAAGAAGGACGAAAAGGA
TCGGGAGAAGCAGCGCGCCCTGGAGGCCATTCAGGCGGAGAAGAACAAGC
AGAAGCGGCAGATCCAGGCGCTGTCCTTCAACCTGGACGACGACGAGGAG
GAGGAGGAGGAGGACGACGAGGATCACGATAAGAAACAGCTGAAGATTAA
GCAGGAGGATCAGCCCAAGCCCAAGTGGACGGAGATCAAGGAAGACATTT
TGCCCATAAAGAAGAAGAAGATATGCAAGAATCCTGACGTGGACACTTCC
TTTCTGCCAGATCGCGAGCGCGAGGAGCAGGAGAACAGACTGCGCGAGCA
GCTGCGTCAAGAATGGGTAATGCAGCAGGCGGAGCTGAAGGACGAGGACA
TCTCCATCACGTTCAGCTACTGGGATGGCTCCGGCCATCGGCGGAACGTG
CTGATGAAGAAGGGCAACTCCATCTACCAGTTTCTGCAGAAGTGCCTGGA
GCTGCTGCGCAAGGAGTTCATCGAACTGAAGACCGTAATGGCCGACCAGC
TGATGTACGTCAAGGAGGATCTGATCCTGCCGCACCACTATTCCTTCTAC
GACTTTATCGTGACCAAGGCACGCGGCAAATCCGGCCCGCTCTTCCAGTT
CGACGTCCACGACGATGTGCGCATGATAAGCGACGCCTCCGTGGAGAAGG
AGGAGTCCCATGCCGGAAAGGTACTCCTCCGCTCCTGGTACGAGCGCAAC
AAGCACATCTTCCCAGCCAGCCGATGGGAGCCCTACGATCCCACCAAGTC
CTACGACAAGTACACCATCAAGGACAAGGATAAGAGTAAAAAGGCAAGCT
TTCTAGACCAT
BO14115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-RA | 1080 | CG12259-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-RA | 1246 | CG12259-RA | 96..1172 | 17..1093 | 5385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27919918..27920994 | 1093..17 | 5385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:44:50 has no hits.
BO14115.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:52 Download gff for
BO14115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 75..1162 | 10..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:04 Download gff for
BO14115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 96..1172 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:29 Download gff for
BO14115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 78..1154 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:24 Download gff for
BO14115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12259-RA | 96..1172 | 17..1095 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:24 Download gff for
BO14115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27919916..27920994 | 17..1095 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:04 Download gff for
BO14115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23745638..23746716 | 17..1095 | 99 | | Minus |
BO14115.pep Sequence
Translation from 16 to 1111
> BO14115.pep
MAHYKGAASEAGRAAQLMKKREIQQQEIEFRKKKIEEELKLDKIENKFAT
HYDAVEQQLKSSTIGLVTLDEMKAKQEDIVREREKKLAQKKDEKDREKQR
ALEAIQAEKNKQKRQIQALSFNLDDDEEEEEEDDEDHDKKQLKIKQEDQP
KPKWTEIKEDILPIKKKKICKNPDVDTSFLPDREREEQENRLREQLRQEW
VMQQAELKDEDISITFSYWDGSGHRRNVLMKKGNSIYQFLQKCLELLRKE
FIELKTVMADQLMYVKEDLILPHHYSFYDFIVTKARGKSGPLFQFDVHDD
VRMISDASVEKEESHAGKVLLRSWYERNKHIFPASRWEPYDPTKSYDKYT
IKDKDKSKKASFLDH
BO14115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12259-PA | 359 | CG12259-PA | 1..359 | 1..359 | 1862 | 100 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1399..1574 | 13..199 | 158 | 25.7 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1399..1574 | 13..199 | 158 | 25.7 | Plus |
