Clone Sequence Records
BO14118.complete Sequence
1465 bp assembled on 2010-04-13
GenBank Submission: KX797280
> BO14118.complete
GAAGTTATCAGTCGACATGAAACGGACATACTTGTTGCTCTGCCTGAGTC
TCCTCACCTGCAATGTGGCCAATTCGGCATACCTGCGTCCAATCGATCTT
AACCAGCTAGCCAAGTCCTCCAACCTTCAGCAGCAGCAGCAACAGCAGCT
GCGTGGCGCTTTGAACCGAGATGATAACAACGATGACGATGATGCCACCA
CCTTGGCACCCAATTCCAACGAGGATTACGACACTCGTCCCCAGTACAGT
TTTGCCTACGATGTGAGGGACTCGCTGACTGGCGATGACAAGCGGCAGGA
GGAGAAGCGCGATGGCGACCTGGTCAAGGGTCAGTACTCCCTGATCGAAC
CCGATGGCACCCGTCGCATTGTGGAGTACACGGCCGATGATGTGAGTGGC
TTCAATGCCATTGTGTCTAAGCAGCGTCTGGATGAGCAGCAGCAGCAAAG
GCTCTCCGCCTCCACTTCGTCCCGTTTCAACAGCCTCGAGGAACTGCAGA
CCCGTCTCACCGCCCAGGCCATTGCGGAAGCCCAATCTCTGGTGGAGGCC
CAACAGGCTAGCCAACTGCAGCTGGAGGCGCAGAATCGTCGAGAATCGGA
AAACCAGGCACGCAACCAAGCCCAACAGCTCATGGAACAGTTCCAACAAC
AGGTGCAACAGCAGGAGCAGCAGCGTCTGCAGCAGGAACAACAATTGAGG
GATCTGCAGCGCCTGCAGGAGCAACGAGATCGCGAGGAGCGTGATCGTGA
GCAGCGGGAGCGGGAGCAGCGTGAGCGGGAACAGCGCGAGCGCCAGCAGC
GGGAACAGGAACTCCGGGAACGGGAGCTGCGCGAGCGCGAACTCCGTGAT
CGTGAACTCCGTGATCGTGAACTCCGGGATCGGGAACAGCGTGATCGGGA
GCAGCGTGACCGCGAGGATCGCCGCCAGCAAGCGGAGCGTCGTCAGAGTC
AGAACCAGCGATTGCTCGACCAGCAGACCCTACTCCTGGCCCAAAGCCTG
CCCAGCATTCAGGCCACCGTGGTCTCCCATCCACCCACTTTGCTCGCCAC
CCGCCTGCCCGTCAGCACCACCACCAGCTCGTCGAGGACTACCACTCTGC
TGACCAGGGAACGCGATCTGGAGGCCTGGCGCCAGTTGCCCAATGCCCGC
ATCACTATCGATCGCAGCTCCCAACCGCTGATCCTCAGTCAGCCATCCAG
TGCCACCGTTCAGGCTCAGCTGATCAGTTCGCCACTGCTTTTGGAGTCCG
GAAACCTCAACGGATTGATAACCACCCGGCTGAATGGCAATGCTGCACGA
GCTGGAGCCGCCTTGAGTTGGTCCAATGGACGCCGCCTGCTGAACAACGA
TCTCTGGCAGCTGGACAGGCTGGATGACCGTGCAGATAATCGGCGAGAAA
GCGAGGAGTTGCGTTCCAACAGTGCCGAACGTCGCTCTAAGAACTGGGCA
AGCTTTCTAGACCAT
BO14118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cry-RB | 1434 | CG16963-PB | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Cry-RA | 1434 | CG16963-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Ccp84Ag-RA | 576 | CG2342-PA | 175..267 | 296..388 | 225 | 82.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cry-RB | 2261 | CG16963-RB | 106..1537 | 16..1447 | 7160 | 100 | Plus |
Cry-RA | 1886 | CG16963-RA | 106..1537 | 16..1447 | 7160 | 100 | Plus |
Ccp84Ag-RA | 1097 | CG2342-RA | 221..313 | 296..388 | 225 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11944985..11946407 | 25..1447 | 7115 | 100 | Plus |
3R | 32079331 | 3R | 6687163..6687255 | 296..388 | 225 | 82.8 | Plus |
3R | 32079331 | 3R | 6689809..6689974 | 381..216 | 215 | 75.3 | Minus |
3R | 32079331 | 3R | 6693017..6693155 | 220..358 | 215 | 77 | Plus |
3R | 32079331 | 3R | 6691322..6691424 | 358..256 | 185 | 78.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:31:08 has no hits.
BO14118.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:54 Download gff for
BO14118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cry-RA | 95..1525 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:41 Download gff for
BO14118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cry-RA | 107..1537 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:55 Download gff for
BO14118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cry-RA | 107..1537 | 17..1449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:55 Download gff for
BO14118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11944985..11946407 | 25..1449 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:41 Download gff for
BO14118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11944985..11946407 | 25..1449 | 99 | | Plus |
BO14118.3prime Sequence
499 bp (477 high quality bases) assembled on 2006-05-29
> BO14118.3prime
ATGGTCTAGAAAGCTTGCCCAGTTCTTAGAGCGACGTTCGGCACTGTTGG
AACGCAACTCCTCGCTTTCTCGCCGATTATCTGCACGGTCATCCAGCCTG
TCCAGCTGCCAGAGATCGTTGTTCAGCAGGCGGCGTCCATTGGACCAACT
CAAGGCGGCTCCAGCTCGTGCAGCATTGCCATTCAGCCGGGTGGTTATCA
ATCCGTTGAGGTTTCCGGACTCCAAAAGCAGTGGCGAACTGATCAGCTGA
GCCTGAACGGTGGCACTGGATGGCTGACTGAGGATCAGCGGTTGGGAGCT
GCGATCGATAGTGATGCGGGCATTGGGCAACTGGCGCCAGGCCTCCAGAT
CGCGTTCCCTGGTCAGCAGAGTGGTAGTCCTCGACGAGCTGGTGGTGGTG
CTGACGGGCAGGCGGGTGGCGAGCAAAGTGGGCGGATGGGAGACCACGGT
GGCCTGAATGCTGGGCAGGCTTTGGGCCAGGAGTAAGGTCTGCTGGTCG
BO14118.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16963-PA | 1434 | Cry-RA | 951..1431 | 499..19 | 2355 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cry-RB | 2261 | CG16963-RB | 1057..1537 | 499..19 | 2375 | 99.6 | Minus |
Cry-RA | 1886 | CG16963-RA | 1057..1537 | 499..19 | 2375 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11945927..11946407 | 499..19 | 2375 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:46:02 has no hits.
BO14118.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:14 Download gff for
BO14118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cry-PA | 951..1434 | 18..499 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:39 Download gff for
BO14118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16963-PA | 951..1434 | 18..499 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:17 Download gff for
BO14118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cry-RA | 1057..1537 | 19..499 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:37 Download gff for
BO14118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cry-RA | 1057..1537 | 19..499 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:37 Download gff for
BO14118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11945927..11946407 | 19..499 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:17 Download gff for
BO14118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11945927..11946407 | 19..499 | 99 | | Minus |
BO14118.pep Sequence
Translation from 16 to 1465
> BO14118.pep
MKRTYLLLCLSLLTCNVANSAYLRPIDLNQLAKSSNLQQQQQQQLRGALN
RDDNNDDDDATTLAPNSNEDYDTRPQYSFAYDVRDSLTGDDKRQEEKRDG
DLVKGQYSLIEPDGTRRIVEYTADDVSGFNAIVSKQRLDEQQQQRLSAST
SSRFNSLEELQTRLTAQAIAEAQSLVEAQQASQLQLEAQNRRESENQARN
QAQQLMEQFQQQVQQQEQQRLQQEQQLRDLQRLQEQRDREERDREQRERE
QREREQRERQQREQELRERELRERELRDRELRDRELRDREQRDREQRDRE
DRRQQAERRQSQNQRLLDQQTLLLAQSLPSIQATVVSHPPTLLATRLPVS
TTTSSSRTTTLLTRERDLEAWRQLPNARITIDRSSQPLILSQPSSATVQA
QLISSPLLLESGNLNGLITTRLNGNAARAGAALSWSNGRRLLNNDLWQLD
RLDDRADNRRESEELRSNSAERRSKNWASFLDH
BO14118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cry-PB | 477 | CG16963-PB | 1..477 | 1..477 | 2375 | 100 | Plus |
Cry-PA | 477 | CG16963-PA | 1..477 | 1..477 | 2375 | 100 | Plus |
spen-PH | 5458 | CG18497-PH | 1811..1992 | 144..318 | 277 | 32.2 | Plus |
spen-PC | 5476 | CG18497-PC | 1829..2010 | 144..318 | 277 | 32.2 | Plus |
spen-PG | 5487 | CG18497-PG | 1813..1994 | 144..318 | 277 | 32.2 | Plus |
spen-PH | 5458 | CG18497-PH | 1738..2147 | 86..481 | 226 | 20.8 | Plus |
spen-PC | 5476 | CG18497-PC | 1756..2165 | 86..481 | 226 | 20.8 | Plus |