Clone BO14118 Report

Search the DGRC for BO14118

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:141
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCry-RA
Protein status:BO14118.pep: Imported from assembly
Sequenced Size:1465

Clone Sequence Records

BO14118.complete Sequence

1465 bp assembled on 2010-04-13

GenBank Submission: KX797280

> BO14118.complete
GAAGTTATCAGTCGACATGAAACGGACATACTTGTTGCTCTGCCTGAGTC
TCCTCACCTGCAATGTGGCCAATTCGGCATACCTGCGTCCAATCGATCTT
AACCAGCTAGCCAAGTCCTCCAACCTTCAGCAGCAGCAGCAACAGCAGCT
GCGTGGCGCTTTGAACCGAGATGATAACAACGATGACGATGATGCCACCA
CCTTGGCACCCAATTCCAACGAGGATTACGACACTCGTCCCCAGTACAGT
TTTGCCTACGATGTGAGGGACTCGCTGACTGGCGATGACAAGCGGCAGGA
GGAGAAGCGCGATGGCGACCTGGTCAAGGGTCAGTACTCCCTGATCGAAC
CCGATGGCACCCGTCGCATTGTGGAGTACACGGCCGATGATGTGAGTGGC
TTCAATGCCATTGTGTCTAAGCAGCGTCTGGATGAGCAGCAGCAGCAAAG
GCTCTCCGCCTCCACTTCGTCCCGTTTCAACAGCCTCGAGGAACTGCAGA
CCCGTCTCACCGCCCAGGCCATTGCGGAAGCCCAATCTCTGGTGGAGGCC
CAACAGGCTAGCCAACTGCAGCTGGAGGCGCAGAATCGTCGAGAATCGGA
AAACCAGGCACGCAACCAAGCCCAACAGCTCATGGAACAGTTCCAACAAC
AGGTGCAACAGCAGGAGCAGCAGCGTCTGCAGCAGGAACAACAATTGAGG
GATCTGCAGCGCCTGCAGGAGCAACGAGATCGCGAGGAGCGTGATCGTGA
GCAGCGGGAGCGGGAGCAGCGTGAGCGGGAACAGCGCGAGCGCCAGCAGC
GGGAACAGGAACTCCGGGAACGGGAGCTGCGCGAGCGCGAACTCCGTGAT
CGTGAACTCCGTGATCGTGAACTCCGGGATCGGGAACAGCGTGATCGGGA
GCAGCGTGACCGCGAGGATCGCCGCCAGCAAGCGGAGCGTCGTCAGAGTC
AGAACCAGCGATTGCTCGACCAGCAGACCCTACTCCTGGCCCAAAGCCTG
CCCAGCATTCAGGCCACCGTGGTCTCCCATCCACCCACTTTGCTCGCCAC
CCGCCTGCCCGTCAGCACCACCACCAGCTCGTCGAGGACTACCACTCTGC
TGACCAGGGAACGCGATCTGGAGGCCTGGCGCCAGTTGCCCAATGCCCGC
ATCACTATCGATCGCAGCTCCCAACCGCTGATCCTCAGTCAGCCATCCAG
TGCCACCGTTCAGGCTCAGCTGATCAGTTCGCCACTGCTTTTGGAGTCCG
GAAACCTCAACGGATTGATAACCACCCGGCTGAATGGCAATGCTGCACGA
GCTGGAGCCGCCTTGAGTTGGTCCAATGGACGCCGCCTGCTGAACAACGA
TCTCTGGCAGCTGGACAGGCTGGATGACCGTGCAGATAATCGGCGAGAAA
GCGAGGAGTTGCGTTCCAACAGTGCCGAACGTCGCTCTAAGAACTGGGCA
AGCTTTCTAGACCAT

BO14118.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cry-RB 1434 CG16963-PB 1..1431 17..1447 7155 100 Plus
Cry-RA 1434 CG16963-PA 1..1431 17..1447 7155 100 Plus
Ccp84Ag-RA 576 CG2342-PA 175..267 296..388 225 82.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cry-RB 2261 CG16963-RB 106..1537 16..1447 7160 100 Plus
Cry-RA 1886 CG16963-RA 106..1537 16..1447 7160 100 Plus
Ccp84Ag-RA 1097 CG2342-RA 221..313 296..388 225 82.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11944985..11946407 25..1447 7115 100 Plus
3R 32079331 3R 6687163..6687255 296..388 225 82.8 Plus
3R 32079331 3R 6689809..6689974 381..216 215 75.3 Minus
3R 32079331 3R 6693017..6693155 220..358 215 77 Plus
3R 32079331 3R 6691322..6691424 358..256 185 78.6 Minus
Blast to na_te.dros performed on 2014-11-27 08:31:08 has no hits.

BO14118.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:54 Download gff for BO14118.complete
Subject Subject Range Query Range Percent Splice Strand
Cry-RA 95..1525 17..1449 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:41 Download gff for BO14118.complete
Subject Subject Range Query Range Percent Splice Strand
Cry-RA 107..1537 17..1449 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:55 Download gff for BO14118.complete
Subject Subject Range Query Range Percent Splice Strand
Cry-RA 107..1537 17..1449 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:55 Download gff for BO14118.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11944985..11946407 25..1449 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:41 Download gff for BO14118.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11944985..11946407 25..1449 99   Plus

BO14118.3prime Sequence

499 bp (477 high quality bases) assembled on 2006-05-29

> BO14118.3prime
ATGGTCTAGAAAGCTTGCCCAGTTCTTAGAGCGACGTTCGGCACTGTTGG
AACGCAACTCCTCGCTTTCTCGCCGATTATCTGCACGGTCATCCAGCCTG
TCCAGCTGCCAGAGATCGTTGTTCAGCAGGCGGCGTCCATTGGACCAACT
CAAGGCGGCTCCAGCTCGTGCAGCATTGCCATTCAGCCGGGTGGTTATCA
ATCCGTTGAGGTTTCCGGACTCCAAAAGCAGTGGCGAACTGATCAGCTGA
GCCTGAACGGTGGCACTGGATGGCTGACTGAGGATCAGCGGTTGGGAGCT
GCGATCGATAGTGATGCGGGCATTGGGCAACTGGCGCCAGGCCTCCAGAT
CGCGTTCCCTGGTCAGCAGAGTGGTAGTCCTCGACGAGCTGGTGGTGGTG
CTGACGGGCAGGCGGGTGGCGAGCAAAGTGGGCGGATGGGAGACCACGGT
GGCCTGAATGCTGGGCAGGCTTTGGGCCAGGAGTAAGGTCTGCTGGTCG

BO14118.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16963-PA 1434 Cry-RA 951..1431 499..19 2355 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Cry-RB 2261 CG16963-RB 1057..1537 499..19 2375 99.6 Minus
Cry-RA 1886 CG16963-RA 1057..1537 499..19 2375 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11945927..11946407 499..19 2375 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 18:46:02 has no hits.

BO14118.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:14 Download gff for BO14118.3prime
Subject Subject Range Query Range Percent Splice Strand
Cry-PA 951..1434 18..499 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:39 Download gff for BO14118.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16963-PA 951..1434 18..499 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:17 Download gff for BO14118.3prime
Subject Subject Range Query Range Percent Splice Strand
Cry-RA 1057..1537 19..499 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:37 Download gff for BO14118.3prime
Subject Subject Range Query Range Percent Splice Strand
Cry-RA 1057..1537 19..499 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:37 Download gff for BO14118.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11945927..11946407 19..499 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:17 Download gff for BO14118.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11945927..11946407 19..499 99   Minus

BO14118.pep Sequence

Translation from 16 to 1465

> BO14118.pep
MKRTYLLLCLSLLTCNVANSAYLRPIDLNQLAKSSNLQQQQQQQLRGALN
RDDNNDDDDATTLAPNSNEDYDTRPQYSFAYDVRDSLTGDDKRQEEKRDG
DLVKGQYSLIEPDGTRRIVEYTADDVSGFNAIVSKQRLDEQQQQRLSAST
SSRFNSLEELQTRLTAQAIAEAQSLVEAQQASQLQLEAQNRRESENQARN
QAQQLMEQFQQQVQQQEQQRLQQEQQLRDLQRLQEQRDREERDREQRERE
QREREQRERQQREQELRERELRERELRDRELRDRELRDREQRDREQRDRE
DRRQQAERRQSQNQRLLDQQTLLLAQSLPSIQATVVSHPPTLLATRLPVS
TTTSSSRTTTLLTRERDLEAWRQLPNARITIDRSSQPLILSQPSSATVQA
QLISSPLLLESGNLNGLITTRLNGNAARAGAALSWSNGRRLLNNDLWQLD
RLDDRADNRRESEELRSNSAERRSKNWASFLDH

BO14118.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cry-PB 477 CG16963-PB 1..477 1..477 2375 100 Plus
Cry-PA 477 CG16963-PA 1..477 1..477 2375 100 Plus
spen-PH 5458 CG18497-PH 1811..1992 144..318 277 32.2 Plus
spen-PC 5476 CG18497-PC 1829..2010 144..318 277 32.2 Plus
spen-PG 5487 CG18497-PG 1813..1994 144..318 277 32.2 Plus
spen-PH 5458 CG18497-PH 1738..2147 86..481 226 20.8 Plus
spen-PC 5476 CG18497-PC 1756..2165 86..481 226 20.8 Plus