Clone BO14124 Report

Search the DGRC for BO14124

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:141
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG12404-RA
Protein status:BO14124.pep: validated full length
Sequenced Size:826

Clone Sequence Records

BO14124.3prime Sequence

646 bp (587 high quality bases) assembled on 2006-05-29

> BO14124.3prime
ATGGTCTAGAAAGCTTGCGTAAATGGTAATCAACGCAAATCCTCCATAGA
GCACCGCACACGGATAGGCAATCAGCAGCTGTTGATGGTCCATGGAGAAG
GCGGTGGCGAACAGTTTCGAGGCCGATATGGCGCACCAGAATATGGAGAT
GCCGCTCACAATTAGGCCGAGTGTGCCCTGAATGGTGATTAAAATGTTGA
TGCCCGACAGCACCACCATGGGCAGCAGACAATAGCCCAGCACGGAGGCC
ACTGCTCCGAAGGTAACCTGCGACCGACTGACCATCAGGGACAGCAGGCA
GTAGAAGAAGATGCAGCCCATTACGCCGATGCCGTAGATGTACGAGAACG
TCACCTTACCGCTCAGCAGCAGGAAGCCGCCAAGTGTGAGGCAAAAGACC
AGTGGACCCGCCATGTCAGTATCCTGGAGGATTTGCTGGTCGGTACCGCG
CAGCGGATTCAGCACGGCGAGCGTCTTTTGGAAGATGTGATTCGGATTGA
TGCCCAGCTCTTCCCGCAGTGGAGGCTCATCATCGAATTCGTTGCCGGCT
CCTCCGCCAGCAGCTGACTTTCCGCTCTTGTCCTGTCCGTAGCTCGTGTC
GGTGTAGGCCGTGGGATCGTAAAACCCACCCCAGCCTTGGCTCGGC

BO14124.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-PA 795 CG12404-RA 165..792 646..19 3040 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-RA 1207 CG12404-RA 259..886 646..19 3080 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12997461..12997647 178..364 935 100 Plus
2L 23513712 2L 12994078..12994237 19..178 800 100 Plus
2L 23513712 2L 13000179..13000315 510..646 625 97.1 Plus
2L 23513712 2L 12997813..12997925 364..476 565 100 Plus
2L 23513712 2L 12999727..12999763 475..511 185 100 Plus
Blast to na_te.dros performed 2015-02-11 09:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 3181..3223 303..345 116 74.4 Plus

BO14124.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:18 Download gff for BO14124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-PA 165..795 18..646 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:45 Download gff for BO14124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-PA 165..795 18..646 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:56:29 Download gff for BO14124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 259..886 19..646 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:33 Download gff for BO14124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 259..886 19..646 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:33 Download gff for BO14124.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12994078..12994237 19..178 100 <- Plus
2L 12997462..12997646 179..363 100 <- Plus
2L 12997813..12997923 364..474 100 <- Plus
2L 12999727..12999761 475..509 100 <- Plus
2L 13000179..13000315 510..646 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:56:29 Download gff for BO14124.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12997813..12997923 364..474 100 <- Plus
arm_2L 12994078..12994237 19..178 100 <- Plus
arm_2L 12997462..12997646 179..363 100 <- Plus
arm_2L 12999727..12999761 475..509 100 <- Plus
arm_2L 13000179..13000315 510..646 97   Plus

BO14124.5prime Sequence

632 bp (625 high quality bases) assembled on 2006-05-29

> BO14124.5prime
GAAGTTATCAGTCGACATGTCTCAGTTCGGCGGACCCAATGACTTTTACG
GCTCCGCGCCCTCGGCCGATGCCAGCTACAACTTCGATATGCCAGAATTT
GGCCAGGAACTGAATTTCCAAACCTTCGACAACACACAGGCCTCAGTGCC
GCCGAACTACGATGCGTCCTATGCCCAACCGCCGAGCCAAGGCTTGGGTG
GCTTCTACGATCCCACGGCCTACACCGACACGAGCTACGGACAGGACAAG
AGCGGAAAGTCAGCTGCTGGCGGAGGAGCCGGCAACGAATTCGATGATGA
GCCTCCACTGCTGGAAGAGCTGGGCATCAATCCGAATCACATCTTCCAAA
AGACGCTCGCCGTGCTGAATCCGCTGCGCGGTACCGACCAGCAAATCCTC
CAGGATACTGACATGGCGGGTCCACTGGTCTTTTGCCTCACACTTGGCGG
CTTCCTGCTGCTGAGCGGTAAGGTGACGTTCTCGTACATCTACGGCATCG
GCGTAATGGGCTGCATCTTCTTCTACTGCCTGCTGTCCCTGATGGTCAGT
CGGTCGCAGGTTACCTTCGGAGCAGTGGCCTCCGTGCTGGGCTATTGTCT
GCTGCCCATGGTGGTGCTGTCGGGCATCCACA

BO14124.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-PA 795 CG12404-RA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-RA 1207 CG12404-RA 94..710 16..632 3070 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13000179..13000384 317..112 1030 100 Minus
2L 23513712 2L 12997478..12997647 632..463 835 99.4 Minus
2L 23513712 2L 12997813..12997925 463..351 565 100 Minus
2L 23513712 2L 13000446..13000542 112..16 485 100 Minus
2L 23513712 2L 12999727..12999763 352..316 185 100 Minus
Blast to na_te.dros performed 2015-02-13 01:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 3181..3223 524..482 116 74.4 Minus

BO14124.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:19 Download gff for BO14124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-PA 1..615 17..631 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:46 Download gff for BO14124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-PA 1..615 17..631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:48:07 Download gff for BO14124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 88..709 10..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:57 Download gff for BO14124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 88..709 10..631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:57 Download gff for BO14124.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12997479..12997646 464..631 99 <- Minus
2L 12997813..12997923 353..463 100 <- Minus
2L 12999727..12999761 318..352 100 <- Minus
2L 13000179..13000384 112..317 100 <- Minus
2L 13000447..13000548 10..111 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:48:07 Download gff for BO14124.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12997479..12997646 464..631 99 <- Minus
arm_2L 12997813..12997923 353..463 100 <- Minus
arm_2L 12999727..12999761 318..352 100 <- Minus
arm_2L 13000179..13000384 112..317 100 <- Minus
arm_2L 13000447..13000548 10..111 97   Minus

BO14124.complete Sequence

826 bp assembled on 2006-10-11

GenBank Submission: FJ633026

> BO14124.complete
GAAGTTATCAGTCGACATGTCTCAGTTCGGCGGACCCAATGACTTTTACG
GCTCCGCGCCCTCGGCCGATGCCAGCTACAACTTCGATATGCCAGAATTT
GGCCAGGAACTGAATTTCCAAACCTTCGACAACACACAGGCCTCAGTGCC
GCCGAACTACGATGCGTCCTATGCCCAACCGCCGAGCCAAGGCTTGGGTG
GCTTCTACGATCCCACGGCCTACACCGACACGAGCTACGGACAGGACAAG
AGCGGAAAGTCAGCTGCTGGCGGAGGAGCCGGCAACGAATTCGATGATGA
GCCTCCACTGCTGGAAGAGCTGGGCATCAATCCGAATCACATCTTCCAAA
AGACGCTCGCCGTGCTGAATCCGCTGCGCGGTACCGACCAGCAAATCCTC
CAGGATACTGACATGGCGGGTCCACTGGTCTTTTGCCTCACACTTGGCGG
CTTCCTGCTGCTGAGCGGTAAGGTGACGTTCTCGTACATCTACGGCATCG
GCGTAATGGGCTGCATCTTCTTCTACTGCCTGCTGTCCCTGATGGTCAGT
CGGTCGCAGGTTACCTTCGGAGCAGTGGCCTCCGTGCTGGGCTATTGTCT
GCTGCCCATGGTGGTGCTGTCGGGCATCAACATTTTAATCACCATTCAGG
GCACACTCGGCCTAATTGTGAGCGGCATCTCCATATTCTGGTGCGCCATA
TCGGCCTCGAAACTGTTCGCCACCGCCTTCTCCATGGACCATCAACAGCT
GCTGATTGCCTATCCGTGTGCGGTGCTCTATGGAGGATTTGCGTTGATTA
CCATTTACGCAAGCTTTCTAGACCAT

BO14124.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-RA 795 CG12404-PA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-RA 1207 CG12404-RA 94..886 16..808 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13000179..13000384 317..112 1030 100 Minus
2L 23513712 2L 12997461..12997647 649..463 935 100 Minus
2L 23513712 2L 12994078..12994237 808..649 800 100 Minus
2L 23513712 2L 12997813..12997925 463..351 565 100 Minus
2L 23513712 2L 13000446..13000542 112..16 485 100 Minus
2L 23513712 2L 12999727..12999763 352..316 185 100 Minus
Blast to na_te.dros performed 2014-11-27 19:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 3181..3223 524..482 116 74.4 Minus

BO14124.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:48 Download gff for BO14124.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 1..795 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:44 Download gff for BO14124.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 84..882 10..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:10 Download gff for BO14124.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 95..886 17..810 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:49 Download gff for BO14124.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 84..882 10..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:30 Download gff for BO14124.complete
Subject Subject Range Query Range Percent Splice Strand
CG12404-RA 95..886 17..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:30 Download gff for BO14124.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12994076..12994237 649..810 98 <- Minus
2L 12997462..12997646 464..648 100 <- Minus
2L 12997813..12997923 353..463 100 <- Minus
2L 12999727..12999761 318..352 100 <- Minus
2L 13000179..13000384 112..317 100 <- Minus
2L 13000447..13000541 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:10 Download gff for BO14124.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12994076..12994237 649..810 98 <- Minus
arm_2L 12997462..12997646 464..648 100 <- Minus
arm_2L 12997813..12997923 353..463 100 <- Minus
arm_2L 12999727..12999761 318..352 100 <- Minus
arm_2L 13000179..13000384 112..317 100 <- Minus
arm_2L 13000447..13000541 17..111 100   Minus

BO14124.pep Sequence

Translation from 16 to 826

> BO14124.pep
MSQFGGPNDFYGSAPSADASYNFDMPEFGQELNFQTFDNTQASVPPNYDA
SYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLE
ELGINPNHIFQKTLAVLNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLS
GKVTFSYIYGIGVMGCIFFYCLLSLMVSRSQVTFGAVASVLGYCLLPMVV
LSGINILITIQGTLGLIVSGISIFWCAISASKLFATAFSMDHQQLLIAYP
CAVLYGGFALITIYASFLDH

BO14124.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12404-PA 264 CG12404-PA 1..264 1..264 1384 100 Plus