Clone Sequence Records
BO14124.3prime Sequence
646 bp (587 high quality bases) assembled on 2006-05-29
> BO14124.3prime
ATGGTCTAGAAAGCTTGCGTAAATGGTAATCAACGCAAATCCTCCATAGA
GCACCGCACACGGATAGGCAATCAGCAGCTGTTGATGGTCCATGGAGAAG
GCGGTGGCGAACAGTTTCGAGGCCGATATGGCGCACCAGAATATGGAGAT
GCCGCTCACAATTAGGCCGAGTGTGCCCTGAATGGTGATTAAAATGTTGA
TGCCCGACAGCACCACCATGGGCAGCAGACAATAGCCCAGCACGGAGGCC
ACTGCTCCGAAGGTAACCTGCGACCGACTGACCATCAGGGACAGCAGGCA
GTAGAAGAAGATGCAGCCCATTACGCCGATGCCGTAGATGTACGAGAACG
TCACCTTACCGCTCAGCAGCAGGAAGCCGCCAAGTGTGAGGCAAAAGACC
AGTGGACCCGCCATGTCAGTATCCTGGAGGATTTGCTGGTCGGTACCGCG
CAGCGGATTCAGCACGGCGAGCGTCTTTTGGAAGATGTGATTCGGATTGA
TGCCCAGCTCTTCCCGCAGTGGAGGCTCATCATCGAATTCGTTGCCGGCT
CCTCCGCCAGCAGCTGACTTTCCGCTCTTGTCCTGTCCGTAGCTCGTGTC
GGTGTAGGCCGTGGGATCGTAAAACCCACCCCAGCCTTGGCTCGGC
BO14124.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-PA | 795 | CG12404-RA | 165..792 | 646..19 | 3040 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-RA | 1207 | CG12404-RA | 259..886 | 646..19 | 3080 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12997461..12997647 | 178..364 | 935 | 100 | Plus |
2L | 23513712 | 2L | 12994078..12994237 | 19..178 | 800 | 100 | Plus |
2L | 23513712 | 2L | 13000179..13000315 | 510..646 | 625 | 97.1 | Plus |
2L | 23513712 | 2L | 12997813..12997925 | 364..476 | 565 | 100 | Plus |
2L | 23513712 | 2L | 12999727..12999763 | 475..511 | 185 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 3181..3223 | 303..345 | 116 | 74.4 | Plus |
BO14124.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:18 Download gff for
BO14124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-PA | 165..795 | 18..646 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:45 Download gff for
BO14124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-PA | 165..795 | 18..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:56:29 Download gff for
BO14124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 259..886 | 19..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:33 Download gff for
BO14124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 259..886 | 19..646 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:33 Download gff for
BO14124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12994078..12994237 | 19..178 | 100 | <- | Plus |
2L | 12997462..12997646 | 179..363 | 100 | <- | Plus |
2L | 12997813..12997923 | 364..474 | 100 | <- | Plus |
2L | 12999727..12999761 | 475..509 | 100 | <- | Plus |
2L | 13000179..13000315 | 510..646 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:56:29 Download gff for
BO14124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12997813..12997923 | 364..474 | 100 | <- | Plus |
arm_2L | 12994078..12994237 | 19..178 | 100 | <- | Plus |
arm_2L | 12997462..12997646 | 179..363 | 100 | <- | Plus |
arm_2L | 12999727..12999761 | 475..509 | 100 | <- | Plus |
arm_2L | 13000179..13000315 | 510..646 | 97 | | Plus |
BO14124.5prime Sequence
632 bp (625 high quality bases) assembled on 2006-05-29
> BO14124.5prime
GAAGTTATCAGTCGACATGTCTCAGTTCGGCGGACCCAATGACTTTTACG
GCTCCGCGCCCTCGGCCGATGCCAGCTACAACTTCGATATGCCAGAATTT
GGCCAGGAACTGAATTTCCAAACCTTCGACAACACACAGGCCTCAGTGCC
GCCGAACTACGATGCGTCCTATGCCCAACCGCCGAGCCAAGGCTTGGGTG
GCTTCTACGATCCCACGGCCTACACCGACACGAGCTACGGACAGGACAAG
AGCGGAAAGTCAGCTGCTGGCGGAGGAGCCGGCAACGAATTCGATGATGA
GCCTCCACTGCTGGAAGAGCTGGGCATCAATCCGAATCACATCTTCCAAA
AGACGCTCGCCGTGCTGAATCCGCTGCGCGGTACCGACCAGCAAATCCTC
CAGGATACTGACATGGCGGGTCCACTGGTCTTTTGCCTCACACTTGGCGG
CTTCCTGCTGCTGAGCGGTAAGGTGACGTTCTCGTACATCTACGGCATCG
GCGTAATGGGCTGCATCTTCTTCTACTGCCTGCTGTCCCTGATGGTCAGT
CGGTCGCAGGTTACCTTCGGAGCAGTGGCCTCCGTGCTGGGCTATTGTCT
GCTGCCCATGGTGGTGCTGTCGGGCATCCACA
BO14124.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-PA | 795 | CG12404-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-RA | 1207 | CG12404-RA | 94..710 | 16..632 | 3070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13000179..13000384 | 317..112 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 12997478..12997647 | 632..463 | 835 | 99.4 | Minus |
2L | 23513712 | 2L | 12997813..12997925 | 463..351 | 565 | 100 | Minus |
2L | 23513712 | 2L | 13000446..13000542 | 112..16 | 485 | 100 | Minus |
2L | 23513712 | 2L | 12999727..12999763 | 352..316 | 185 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 01:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 3181..3223 | 524..482 | 116 | 74.4 | Minus |
BO14124.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:19 Download gff for
BO14124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-PA | 1..615 | 17..631 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:11:46 Download gff for
BO14124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-PA | 1..615 | 17..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:48:07 Download gff for
BO14124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 88..709 | 10..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:57 Download gff for
BO14124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 88..709 | 10..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:57 Download gff for
BO14124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12997479..12997646 | 464..631 | 99 | <- | Minus |
2L | 12997813..12997923 | 353..463 | 100 | <- | Minus |
2L | 12999727..12999761 | 318..352 | 100 | <- | Minus |
2L | 13000179..13000384 | 112..317 | 100 | <- | Minus |
2L | 13000447..13000548 | 10..111 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:48:07 Download gff for
BO14124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12997479..12997646 | 464..631 | 99 | <- | Minus |
arm_2L | 12997813..12997923 | 353..463 | 100 | <- | Minus |
arm_2L | 12999727..12999761 | 318..352 | 100 | <- | Minus |
arm_2L | 13000179..13000384 | 112..317 | 100 | <- | Minus |
arm_2L | 13000447..13000548 | 10..111 | 97 | | Minus |
BO14124.complete Sequence
826 bp assembled on 2006-10-11
GenBank Submission: FJ633026
> BO14124.complete
GAAGTTATCAGTCGACATGTCTCAGTTCGGCGGACCCAATGACTTTTACG
GCTCCGCGCCCTCGGCCGATGCCAGCTACAACTTCGATATGCCAGAATTT
GGCCAGGAACTGAATTTCCAAACCTTCGACAACACACAGGCCTCAGTGCC
GCCGAACTACGATGCGTCCTATGCCCAACCGCCGAGCCAAGGCTTGGGTG
GCTTCTACGATCCCACGGCCTACACCGACACGAGCTACGGACAGGACAAG
AGCGGAAAGTCAGCTGCTGGCGGAGGAGCCGGCAACGAATTCGATGATGA
GCCTCCACTGCTGGAAGAGCTGGGCATCAATCCGAATCACATCTTCCAAA
AGACGCTCGCCGTGCTGAATCCGCTGCGCGGTACCGACCAGCAAATCCTC
CAGGATACTGACATGGCGGGTCCACTGGTCTTTTGCCTCACACTTGGCGG
CTTCCTGCTGCTGAGCGGTAAGGTGACGTTCTCGTACATCTACGGCATCG
GCGTAATGGGCTGCATCTTCTTCTACTGCCTGCTGTCCCTGATGGTCAGT
CGGTCGCAGGTTACCTTCGGAGCAGTGGCCTCCGTGCTGGGCTATTGTCT
GCTGCCCATGGTGGTGCTGTCGGGCATCAACATTTTAATCACCATTCAGG
GCACACTCGGCCTAATTGTGAGCGGCATCTCCATATTCTGGTGCGCCATA
TCGGCCTCGAAACTGTTCGCCACCGCCTTCTCCATGGACCATCAACAGCT
GCTGATTGCCTATCCGTGTGCGGTGCTCTATGGAGGATTTGCGTTGATTA
CCATTTACGCAAGCTTTCTAGACCAT
BO14124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-RA | 795 | CG12404-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-RA | 1207 | CG12404-RA | 94..886 | 16..808 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13000179..13000384 | 317..112 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 12997461..12997647 | 649..463 | 935 | 100 | Minus |
2L | 23513712 | 2L | 12994078..12994237 | 808..649 | 800 | 100 | Minus |
2L | 23513712 | 2L | 12997813..12997925 | 463..351 | 565 | 100 | Minus |
2L | 23513712 | 2L | 13000446..13000542 | 112..16 | 485 | 100 | Minus |
2L | 23513712 | 2L | 12999727..12999763 | 352..316 | 185 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 3181..3223 | 524..482 | 116 | 74.4 | Minus |
BO14124.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:48 Download gff for
BO14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 1..795 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:44 Download gff for
BO14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 84..882 | 10..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:10 Download gff for
BO14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 95..886 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:49 Download gff for
BO14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 84..882 | 10..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:30 Download gff for
BO14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12404-RA | 95..886 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:30 Download gff for
BO14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12994076..12994237 | 649..810 | 98 | <- | Minus |
2L | 12997462..12997646 | 464..648 | 100 | <- | Minus |
2L | 12997813..12997923 | 353..463 | 100 | <- | Minus |
2L | 12999727..12999761 | 318..352 | 100 | <- | Minus |
2L | 13000179..13000384 | 112..317 | 100 | <- | Minus |
2L | 13000447..13000541 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:10 Download gff for
BO14124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12994076..12994237 | 649..810 | 98 | <- | Minus |
arm_2L | 12997462..12997646 | 464..648 | 100 | <- | Minus |
arm_2L | 12997813..12997923 | 353..463 | 100 | <- | Minus |
arm_2L | 12999727..12999761 | 318..352 | 100 | <- | Minus |
arm_2L | 13000179..13000384 | 112..317 | 100 | <- | Minus |
arm_2L | 13000447..13000541 | 17..111 | 100 | | Minus |
BO14124.pep Sequence
Translation from 16 to 826
> BO14124.pep
MSQFGGPNDFYGSAPSADASYNFDMPEFGQELNFQTFDNTQASVPPNYDA
SYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLE
ELGINPNHIFQKTLAVLNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLS
GKVTFSYIYGIGVMGCIFFYCLLSLMVSRSQVTFGAVASVLGYCLLPMVV
LSGINILITIQGTLGLIVSGISIFWCAISASKLFATAFSMDHQQLLIAYP
CAVLYGGFALITIYASFLDH
BO14124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12404-PA | 264 | CG12404-PA | 1..264 | 1..264 | 1384 | 100 | Plus |