Clone Sequence Records
BO14131.complete Sequence
1189 bp assembled on 2010-11-19
GenBank Submission: KX797445
> BO14131.complete
GAAGTTATCAGTCGACATGTACGCGTTAACAATACTTTTACCAATTTTGC
AACTATTTGCAATCGTTCGAGCGGAATCGGGAGAATTCGAGAAACTCCTG
GTGCCCGTGAGCCACGGAAGCGCAGAGCAAAGGAGCGGAGCACGGAGCAA
CGAGACTACTGGACACTCGGTGGCCGCCCGCTCCTACTACGACGTGGTGC
AAAACGCCGGACAGACGGGCTGCTCCGTGGGCACCGAGTGCACCCCGCTC
CACGACTGCACCGCCCTGATCTACGAGGTTGCCCGGAGTTGCTACTACGG
CGACAAGTCGCTCTACTGCGGCGGATCCAGCGAGGAGCTGCCCTACGTCT
GCTGCCCCAGCAGTCCGTTGGAGAAGAACCAGGTGTGCGGCAAGTCACTG
GTCCAGGGGCACTTCTACAAGGGACTGGGCTCCTATCCCTTTGTCGCGCG
CATCGGCTTCAAACATGTCAACACTGGAGCTTTTGCTTATCCGTGTGCCG
GAGCCGTAATTGCCCGCCGGGTCATCCTCACGGCCGCCCATTGCGCTCTG
GCCAAGGCCGATGGACACCGACTGTCATCGGTGCGCGTGGGCGAGTACGA
TACTAGTAGCGATCCGGACTGCGCCAACACCGGATTCTGTGCACCGCGGT
CGGTCAACCACGCCATCAGCCATGTGATCGTGCATCCCGACTACAAGCAG
GGCCAGTATCACCATGACATTGCTCTGCTGGTGCTTAAAACGCCGCTAAA
CTATTCGGTGGCTACACAGCCCATCTGCCTGCAGAAGACACGCGCCAACC
TGGTGGTGGGCAAACGGGCTACCATCGCCGGTTGGGGCAAGATGTCCACG
TCGAGTGTCCGCCAGCCGGAGATGTCGCATCTGGACGTGCCGCTGACCAG
CTGGGACCTGTGCCTGCGCAACTACGGCTCCACGGGTGCCCTGGAATCGC
CCAACTCCATCGAGGGTCAATGGATGTGCGCCGGCGGCGAGGGCAAGGAC
GTCTGCCAAGGATTCGGCGGAGCACCGCTTTTCATACAAGAGAACGGCAT
CTTTTCACAGATCGGCATCATGTCCTTTGGATCTGATAACTGCGGCGGTC
TGCGCATCCCGAGTGTCTACACATCCGTGGCCCACTTTTCCGAGTGGATT
CACGACAACACGCCGCCGGAGGCAAGCTTTCTAGACCAT
BO14131.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-RA | 1158 | CG17572-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-RA | 1344 | CG17572-RA | 126..1280 | 17..1171 | 5775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19073308..19073683 | 464..89 | 1880 | 100 | Minus |
2L | 23513712 | 2L | 19071424..19071726 | 1060..758 | 1515 | 100 | Minus |
2L | 23513712 | 2L | 19072831..19073015 | 758..574 | 925 | 100 | Minus |
2L | 23513712 | 2L | 19071195..19071310 | 1171..1056 | 580 | 100 | Minus |
2L | 23513712 | 2L | 19073104..19073214 | 575..465 | 555 | 100 | Minus |
2L | 23513712 | 2L | 19073952..19074024 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:35:51 has no hits.
BO14131.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-19 09:48:55 Download gff for
BO14131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 123..1277 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:24 Download gff for
BO14131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 126..1280 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:27 Download gff for
BO14131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 126..1280 | 17..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:27 Download gff for
BO14131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19071193..19071305 | 1061..1173 | 98 | <- | Minus |
2L | 19071424..19071725 | 759..1060 | 100 | <- | Minus |
2L | 19072831..19073015 | 574..758 | 100 | <- | Minus |
2L | 19073106..19073214 | 465..573 | 100 | <- | Minus |
2L | 19073308..19073682 | 90..464 | 100 | <- | Minus |
2L | 19073952..19074024 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:24 Download gff for
BO14131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19071193..19071305 | 1061..1173 | 98 | <- | Minus |
arm_2L | 19071424..19071725 | 759..1060 | 100 | <- | Minus |
arm_2L | 19072831..19073015 | 574..758 | 100 | <- | Minus |
arm_2L | 19073106..19073214 | 465..573 | 100 | <- | Minus |
arm_2L | 19073308..19073682 | 90..464 | 100 | <- | Minus |
arm_2L | 19073952..19074024 | 17..89 | 100 | | Minus |
BO14131.5prime Sequence
755 bp (558 high quality bases) assembled on 2010-02-20
> BO14131.5prime
TAACAATACTTTTACCAATTTTGCAACTATTTGCAATCGTTCGAGCGGAA
TCGGGAGAATTCGAGAAACTCCTGGTGCCCGTGAGCCACGGAAGCGCAGA
GCAAAGGAGCGGAGCACGGAGCAACGAGACTACTGGACACTCGGTGGCCG
CCCGCTCCTACTACGACGTGGTGCAAAACGCCGGACAGACGGGCTGCTCC
GTGGGCACCGAGTGCACCCCGCTCCACGACTGCACCGCCCTGATCTACGA
GGTTGCCCGGAGTTGCTACTACGGCGACAAGTCGCTCTACTGCGGCGGAT
CCAGCGAGGAGCTGCCCTACGTCTGCTGCCCCAGCAGTCCGTTGGAGAAG
AACCAGGTGTGCGGCAAGTCACTGGTCCAGGGGCACTTCTACAAGGGACT
GGGCTCCTATCCCTTTTGTCGCGCGCATCGGCTTCAAACATGTCAACACT
GGAGCTTTTGCTTATCCGTGTGCCGGACCCGTAATTGCCCGCCGGGTCAT
CCTCACGGCCGCCCATTTGCGCTCTGGCCAAGGCCGATGGACACCGACTG
TCATCGGTGCGCGTGGGCGAATACCATACTAGTAACGATCCGGACTGCGC
CCACACCGGATTCTGTGCCCCGCGGTCGGGCCACCACCCCATCAGCCATG
TGATCGTGCATCCCGAACTACAAGCAGGGCCAGTATCACCATGAATTTGG
TCTGCTGGTGCTTAAAACGCCGCTAAACATTCCGGGGGCTCCCAGCCCAT
CTTGC
BO14131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-RA | 1344 | CG17572-RA | 136..885 | 1..752 | 3410 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19073308..19073683 | 439..63 | 1835 | 99.7 | Minus |
2L | 23513712 | 2L | 19072838..19073015 | 728..550 | 680 | 93.3 | Minus |
2L | 23513712 | 2L | 19073104..19073214 | 551..440 | 495 | 98.2 | Minus |
2L | 23513712 | 2L | 19073952..19074014 | 63..1 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:53:49 has no hits.
BO14131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:33 Download gff for
BO14131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 133..882 | 1..752 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 08:38:20 Download gff for
BO14131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 136..885 | 1..752 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:38:25 Download gff for
BO14131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 136..885 | 1..752 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:38:25 Download gff for
BO14131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19072830..19073015 | 550..736 | 92 | <- | Minus |
2L | 19073106..19073214 | 440..549 | 98 | <- | Minus |
2L | 19073308..19073682 | 64..439 | 99 | <- | Minus |
2L | 19073952..19074014 | 1..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 08:38:20 Download gff for
BO14131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19072830..19073015 | 550..736 | 92 | <- | Minus |
arm_2L | 19073106..19073214 | 440..549 | 98 | <- | Minus |
arm_2L | 19073308..19073682 | 64..439 | 99 | <- | Minus |
arm_2L | 19073952..19074014 | 1..63 | 100 | | Minus |
BO14131.3prime Sequence
665 bp (446 high quality bases) assembled on 2010-02-20
> BO14131.3prime
CTCGGAAAAGTGGGCCACGGATGTGTAGACACTCGGGATGCGCAGACCGC
CGCAGTTATCAGATCCAAAGGACATGATGCCGATCTGTGAAAAGATGCCG
TTCTCTTGTATGAAAAGCGGTGCTCCGCCGAATCCTTGGCAGACGTCCTT
GCCCTCGCCGCCGGCGCACATCCATTGACCCTCGATGGAGTTGGGCGATT
CCAGGGCACCCGTGGAGCCGTAGTTGCGCAGGCACAGGTCCCAGCTGGTC
AGCGGCACGTCCAGATGCGACATCTCCGGCTGGCGGACACTCGACGTGGA
CATCTTGCCCCAACCGGCGATGGTAGCCCGTTTGCCCACCACCAGGTTGG
CGCGTGTCTTCTGCAGGCAGATGGGCTGTGTAGCCCCCGAATATTTTAGC
GGCGTTTTAAGCACCAGCAGAGCAATGTCATGGTGATACTGGGCCCCTGC
TTGTAGTCGGGATGCACGATCCACTTGGTTGATGGCGTGGTTGACCGACC
GCGGGGCACAAAATCCGGGGTTGGCGCAATCCGGATCGCTACTAGTATCG
TACTCGCCCACGCCCACCGATGACAGTCGGTGCCCTCCGGCCTTGGCCAA
AGCGAAATGGGCGGGCGTGAGGATGACCCGGCGGGCAATTCGGGTCCGGG
ACACGGATAAACCAA
BO14131.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-RA | 1344 | CG17572-RA | 596..1253 | 660..1 | 2960 | 96.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:16:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19071424..19071724 | 85..385 | 1505 | 100 | Plus |
2L | 23513712 | 2L | 19072830..19073015 | 386..574 | 710 | 94.2 | Plus |
2L | 23513712 | 2L | 19071222..19071310 | 1..89 | 445 | 100 | Plus |
2L | 23513712 | 2L | 19073104..19073192 | 573..660 | 275 | 89.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:16:23 has no hits.
BO14131.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:32 Download gff for
BO14131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 590..1250 | 1..663 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 08:53:03 Download gff for
BO14131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 593..1253 | 1..663 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:16 Download gff for
BO14131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17572-RA | 593..1253 | 1..663 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:16 Download gff for
BO14131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19071222..19071305 | 1..84 | 100 | <- | Plus |
2L | 19071424..19071725 | 85..386 | 99 | <- | Plus |
2L | 19072831..19073015 | 387..574 | 94 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 08:53:03 Download gff for
BO14131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19071222..19071305 | 1..84 | 100 | <- | Plus |
arm_2L | 19071424..19071725 | 85..386 | 99 | <- | Plus |
arm_2L | 19072831..19073015 | 387..574 | 94 | <- | Plus |
BO14131.pep Sequence
Translation from 16 to 1189
> BO14131.pep
MYALTILLPILQLFAIVRAESGEFEKLLVPVSHGSAEQRSGARSNETTGH
SVAARSYYDVVQNAGQTGCSVGTECTPLHDCTALIYEVARSCYYGDKSLY
CGGSSEELPYVCCPSSPLEKNQVCGKSLVQGHFYKGLGSYPFVARIGFKH
VNTGAFAYPCAGAVIARRVILTAAHCALAKADGHRLSSVRVGEYDTSSDP
DCANTGFCAPRSVNHAISHVIVHPDYKQGQYHHDIALLVLKTPLNYSVAT
QPICLQKTRANLVVGKRATIAGWGKMSTSSVRQPEMSHLDVPLTSWDLCL
RNYGSTGALESPNSIEGQWMCAGGEGKDVCQGFGGAPLFIQENGIFSQIG
IMSFGSDNCGGLRIPSVYTSVAHFSEWIHDNTPPEASFLDH
BO14131.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17572-PA | 385 | CG17572-PA | 1..385 | 1..385 | 2065 | 100 | Plus |
Ser7-PA | 397 | CG2045-PA | 118..388 | 118..378 | 323 | 31.4 | Plus |
CG31219-PB | 345 | CG31219-PB | 65..339 | 111..378 | 318 | 32.4 | Plus |
CG31728-PC | 639 | CG31728-PC | 377..637 | 102..381 | 307 | 28.9 | Plus |
MP1-PA | 390 | CG1102-PA | 158..387 | 160..381 | 300 | 32.9 | Plus |