Clone Sequence Records
BO14135.3prime Sequence
383 bp (382 high quality bases) assembled on 2006-05-29
> BO14135.3prime
ATGGTCTAGAAAGCTTGCGCAGTCTAGGAAATTAGCCGCCATCAAAAGTT
CTAATGCGATCTCCGGAGCGATCGGGAATTCGGGTATTTCGGTAGAACTG
TTGGTGTAACGCACTTTATAGGTGAAGTACATGCAGACCTTTTGTAGGAC
GTGGGATGGTATCTCCCGGAAATGCACCTCGTTGGCCTCGTTCTCGGCAA
ACTGACCCGGTCCGGACAACATCGCCCGGATTGTGCCGGAGGTGAGAGCG
TGCTCGCGTTTGACGACAAATTCGTGGCCGTCCGAGGAAATCAGCTTCAC
GTACATGGCGTCCGGACCCTCGCATCCGCCGTAGATCTTGTCGCCGCGCT
GCTCGTCCATTGCTATCATGTCGACTGATAACT
BO14135.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9291-PA | 354 | Elongin-C-RA | 1..351 | 369..19 | 1755 | 100 | Minus |
CG9291-PB | 354 | Elongin-C-RB | 1..351 | 369..19 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloC-RB | 654 | CG9291-RB | 148..498 | 369..19 | 1755 | 100 | Minus |
EloC-RA | 576 | CG9291-RA | 70..420 | 369..19 | 1755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19445928..19446139 | 158..369 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 19445241..19445379 | 19..157 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:04:44 has no hits.
BO14135.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:31 Download gff for
BO14135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9291-PB | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:01 Download gff for
BO14135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9291-PB | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:49:16 Download gff for
BO14135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-C-RA | 70..425 | 14..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:59 Download gff for
BO14135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloC-RA | 70..425 | 14..369 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:59 Download gff for
BO14135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19445236..19445379 | 14..157 | 98 | <- | Plus |
2R | 19445928..19446143 | 158..374 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:49:16 Download gff for
BO14135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15332741..15332884 | 14..157 | 98 | <- | Plus |
arm_2R | 15333433..15333648 | 158..374 | 99 | | Plus |
BO14135.complete Sequence
385 bp assembled on 2006-10-11
GenBank Submission: FJ633028
> BO14135.complete
GAAGTTATCAGTCGACATGATAGCAATGGACGAGCAGCGCGGCGACAAGA
TCTACGGCGGATGCGAGGGTCCGGACGCCATGTACGTGAAGCTGATTTCC
TCGGACGGCCACGAATTTGTCGTCAAACGCGAGCACGCTCTCACCTCCGG
CACAATCCGGGCGATGTTGTCCGGACCGGGTCAGTTTGCCGAGAACGAGG
CCAACGAGGTGCATTTCCGGGAGATACCATCCCACGTCCTACAAAAGGTC
TGCATGTACTTCACCTATAAAGTGCGTTACACCAACAGTTCTACCGAAAT
ACCCGAATTCCCGATCGCTCCGGAGATCGCATTAGAACTTTTGATGGCGG
CTAATTTCCTAGACTGCGCAAGCTTTCTAGACCAT
BO14135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloC-RB | 354 | CG9291-PB | 1..351 | 17..367 | 1755 | 100 | Plus |
EloC-RA | 354 | CG9291-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloC-RB | 654 | CG9291-RB | 148..498 | 17..367 | 1755 | 100 | Plus |
EloC-RA | 576 | CG9291-RA | 70..420 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19445928..19446139 | 228..17 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 19445241..19445379 | 367..229 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:34:21 has no hits.
BO14135.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:49 Download gff for
BO14135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-C-RB | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:00 Download gff for
BO14135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-C-RA | 60..415 | 17..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:45 Download gff for
BO14135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-C-RA | 70..420 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:50 Download gff for
BO14135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-C-RA | 60..415 | 17..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:29 Download gff for
BO14135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloC-RA | 70..420 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:29 Download gff for
BO14135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19445239..19445379 | 229..369 | 98 | <- | Minus |
2R | 19445928..19446139 | 17..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:45 Download gff for
BO14135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15332744..15332884 | 229..369 | 98 | <- | Minus |
arm_2R | 15333433..15333644 | 17..228 | 100 | | Minus |
BO14135.pep Sequence
Translation from 16 to 385
> BO14135.pep
MIAMDEQRGDKIYGGCEGPDAMYVKLISSDGHEFVVKREHALTSGTIRAM
LSGPGQFAENEANEVHFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPI
APEIALELLMAANFLDCASFLDH
BO14135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloC-PB | 117 | CG9291-PB | 1..117 | 1..117 | 614 | 100 | Plus |
EloC-PA | 117 | CG9291-PA | 1..117 | 1..117 | 614 | 100 | Plus |