Clone BO14135 Report

Search the DGRC for BO14135

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:141
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptElongin-C-RA
Protein status:BO14135.pep: validated full length
Sequenced Size:385

Clone Sequence Records

BO14135.3prime Sequence

383 bp (382 high quality bases) assembled on 2006-05-29

> BO14135.3prime
ATGGTCTAGAAAGCTTGCGCAGTCTAGGAAATTAGCCGCCATCAAAAGTT
CTAATGCGATCTCCGGAGCGATCGGGAATTCGGGTATTTCGGTAGAACTG
TTGGTGTAACGCACTTTATAGGTGAAGTACATGCAGACCTTTTGTAGGAC
GTGGGATGGTATCTCCCGGAAATGCACCTCGTTGGCCTCGTTCTCGGCAA
ACTGACCCGGTCCGGACAACATCGCCCGGATTGTGCCGGAGGTGAGAGCG
TGCTCGCGTTTGACGACAAATTCGTGGCCGTCCGAGGAAATCAGCTTCAC
GTACATGGCGTCCGGACCCTCGCATCCGCCGTAGATCTTGTCGCCGCGCT
GCTCGTCCATTGCTATCATGTCGACTGATAACT

BO14135.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9291-PA 354 Elongin-C-RA 1..351 369..19 1755 100 Minus
CG9291-PB 354 Elongin-C-RB 1..351 369..19 1755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
EloC-RB 654 CG9291-RB 148..498 369..19 1755 100 Minus
EloC-RA 576 CG9291-RA 70..420 369..19 1755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19445928..19446139 158..369 1060 100 Plus
2R 25286936 2R 19445241..19445379 19..157 695 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:04:44 has no hits.

BO14135.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:31 Download gff for BO14135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9291-PB 1..354 15..369 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:01 Download gff for BO14135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9291-PB 1..354 15..369 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:49:16 Download gff for BO14135.3prime
Subject Subject Range Query Range Percent Splice Strand
Elongin-C-RA 70..425 14..369 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:59 Download gff for BO14135.3prime
Subject Subject Range Query Range Percent Splice Strand
EloC-RA 70..425 14..369 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:59 Download gff for BO14135.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19445236..19445379 14..157 98 <- Plus
2R 19445928..19446143 158..374 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:49:16 Download gff for BO14135.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15332741..15332884 14..157 98 <- Plus
arm_2R 15333433..15333648 158..374 99   Plus

BO14135.complete Sequence

385 bp assembled on 2006-10-11

GenBank Submission: FJ633028

> BO14135.complete
GAAGTTATCAGTCGACATGATAGCAATGGACGAGCAGCGCGGCGACAAGA
TCTACGGCGGATGCGAGGGTCCGGACGCCATGTACGTGAAGCTGATTTCC
TCGGACGGCCACGAATTTGTCGTCAAACGCGAGCACGCTCTCACCTCCGG
CACAATCCGGGCGATGTTGTCCGGACCGGGTCAGTTTGCCGAGAACGAGG
CCAACGAGGTGCATTTCCGGGAGATACCATCCCACGTCCTACAAAAGGTC
TGCATGTACTTCACCTATAAAGTGCGTTACACCAACAGTTCTACCGAAAT
ACCCGAATTCCCGATCGCTCCGGAGATCGCATTAGAACTTTTGATGGCGG
CTAATTTCCTAGACTGCGCAAGCTTTCTAGACCAT

BO14135.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
EloC-RB 354 CG9291-PB 1..351 17..367 1755 100 Plus
EloC-RA 354 CG9291-PA 1..351 17..367 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
EloC-RB 654 CG9291-RB 148..498 17..367 1755 100 Plus
EloC-RA 576 CG9291-RA 70..420 17..367 1755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19445928..19446139 228..17 1060 100 Minus
2R 25286936 2R 19445241..19445379 367..229 695 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:34:21 has no hits.

BO14135.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:49 Download gff for BO14135.complete
Subject Subject Range Query Range Percent Splice Strand
Elongin-C-RB 1..354 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:00 Download gff for BO14135.complete
Subject Subject Range Query Range Percent Splice Strand
Elongin-C-RA 60..415 17..372 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:45 Download gff for BO14135.complete
Subject Subject Range Query Range Percent Splice Strand
Elongin-C-RA 70..420 17..369 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:50 Download gff for BO14135.complete
Subject Subject Range Query Range Percent Splice Strand
Elongin-C-RA 60..415 17..372 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:29 Download gff for BO14135.complete
Subject Subject Range Query Range Percent Splice Strand
EloC-RA 70..420 17..369 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:29 Download gff for BO14135.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19445239..19445379 229..369 98 <- Minus
2R 19445928..19446139 17..228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:45 Download gff for BO14135.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15332744..15332884 229..369 98 <- Minus
arm_2R 15333433..15333644 17..228 100   Minus

BO14135.pep Sequence

Translation from 16 to 385

> BO14135.pep
MIAMDEQRGDKIYGGCEGPDAMYVKLISSDGHEFVVKREHALTSGTIRAM
LSGPGQFAENEANEVHFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPI
APEIALELLMAANFLDCASFLDH

BO14135.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
EloC-PB 117 CG9291-PB 1..117 1..117 614 100 Plus
EloC-PA 117 CG9291-PA 1..117 1..117 614 100 Plus