Clone BO14136 Report

Search the DGRC for BO14136

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:141
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG17331-RA
Protein status:BO14136.pep: validated full length
Sequenced Size:637

Clone Sequence Records

BO14136.3prime Sequence

611 bp (579 high quality bases) assembled on 2006-05-29

> BO14136.3prime
ATGGTCTAGAAAGCTTGCAGCGGCCAGGCTAGCAGCGCTGATTGGCTCCA
AATCTCGCACACCATCCTTGTCCACGACGGCGACGGTGAAGTTCTTGAGG
TTGACGACCAGGCGCTTCTGGATTTCGGCAATGCACTTCTTGAAGACGTC
GTAGGCCTCCGCCTGGGTTATATTGGGGTGCCAGTATCGGTCATAGATGC
TGGATGCGAAGATCGCACCATAGCCATGACCGGCGTAATTCACAGGCAGT
GCATTGGCCAAATAGTCAATGAAGGTGAGCTCCGGACCCGCGTTGGGATC
GTAGCCGGCCACAAACATGAACACTTGGTAGGGCGTGCGACTGCGAAGAT
ATTCGGCCAGATTCTTGCGAGTAAAATGAGCCGATTCACGTGGACTTAAA
TCGTAGCCATTGCGCATCTTGTACAACGCTATGTTCTTCGAAATGAATTC
GGTAAATTGCTCCGTGTCGCCCGATTCGCCGACGGTTGAAATAAGCAGAC
TATCCGACACCTTGTGGATTTTGTTCTGATCCTCTTTCATCACTATAATG
GATCGGGCGTGGGTGGTGTCCGCCGCCAGCATCACGAAGTCCGGGCCCTT
GATACCCAGTA

BO14136.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17331-PA 606 CG17331-RA 11..603 611..19 2940 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4-RB 815 CG17331-RB 111..703 611..19 2950 99.8 Minus
Prosbeta4-RA 774 CG17331-RA 111..703 611..19 2950 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16731292..16731578 19..305 1435 100 Plus
2L 23513712 2L 16731643..16731869 305..531 1135 100 Plus
2L 23513712 2L 16731943..16732023 531..611 390 98.8 Plus
Blast to na_te.dros performed 2015-02-02 19:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 3255..3304 235..284 106 68 Plus

BO14136.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:32 Download gff for BO14136.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17331-PA 12..606 18..610 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:02 Download gff for BO14136.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17331-PA 12..606 18..610 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:55:44 Download gff for BO14136.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RA 112..708 11..610 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:12:37 Download gff for BO14136.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RA 112..708 11..610 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:12:37 Download gff for BO14136.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16731287..16731577 11..304 98 <- Plus
2L 16731643..16731868 305..530 100 <- Plus
2L 16731943..16732022 531..610 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:55:44 Download gff for BO14136.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16731643..16731868 305..530 100 <- Plus
arm_2L 16731943..16732022 531..610 98   Plus
arm_2L 16731287..16731577 11..304 98 <- Plus

BO14136.complete Sequence

637 bp assembled on 2007-12-14

GenBank Submission: FJ633029

> BO14136.complete
GAAGTTATCAGTCGACATGGAGACTCTACTGGGTATCAAGGGCCCGGACT
TCGTGATGCTGGCGGCGGACACCACCCACGCCCGATCCATTATAGTGATG
AAAGAGGATCAGAACAAAATCCACAAGGTGTCGGATAGTCTGCTTATTTC
AACCGTCGGCGAATCGGGCGACACGGAGCAATTTACCGAATTCATTTCGA
AGAACATAGCGTTGTACAAGATGCGCAATGGCTACGATTTAAGTCCACGT
GAATCGGCTCATTTTACTCGCAAGAATCTGGCCGAATATCTTCGCAGTCG
CACGCCCTACCAAGTGTTCATGTTTGTGGCCGGCTACGATCCCAACGCGG
GTCCGGAGCTCACCTTCATTGACTATTTGGCCAATGCACTGCCTGTGAAT
TACGCCGGTCATGGCTATGGTGCGATCTTCGCATCCAGCATCTATGACCG
ATACTGGCACCCCAATATAACCCAGGCGGAGGCCTACGACGTCTTCAAGA
AGTGCATTGCCGAAATCCAGAAGCGCCTGGTCGTCAACCTCAAGAACTTC
ACCGTCGCCGTCGTGGACAAGGATGGTGTGCGAGATTTGGAGCCAATCAG
CGCTGCTAGCCTGGCCGCTGCAAGCTTTCTAGACCAT

BO14136.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4-RB 606 CG17331-PB 1..603 17..619 3000 99.8 Plus
Prosbeta4-RA 606 CG17331-PA 1..603 17..619 3000 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4-RB 815 CG17331-RB 99..703 15..619 3010 99.8 Plus
Prosbeta4-RA 774 CG17331-RA 99..703 15..619 3010 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16731292..16731578 619..333 1435 100 Minus
2L 23513712 2L 16731643..16731869 333..107 1135 100 Minus
2L 23513712 2L 16731943..16732035 107..15 450 98.9 Minus
Blast to na_te.dros performed 2014-11-27 15:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 3255..3304 403..354 106 68 Minus

BO14136.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:21 Download gff for BO14136.complete
Subject Subject Range Query Range Percent Splice Strand
CG17331-RA 1..606 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:22 Download gff for BO14136.complete
Subject Subject Range Query Range Percent Splice Strand
CG17331-RA 85..704 6..627 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:25 Download gff for BO14136.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RA 101..703 17..621 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:00 Download gff for BO14136.complete
Subject Subject Range Query Range Percent Splice Strand
CG17331-RA 97..699 17..621 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:28 Download gff for BO14136.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RA 101..703 17..621 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:28 Download gff for BO14136.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16731290..16731577 334..621 99 <- Minus
2L 16731643..16731868 108..333 100 <- Minus
2L 16731943..16732033 17..107 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:25 Download gff for BO14136.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16731290..16731577 334..621 99 <- Minus
arm_2L 16731643..16731868 108..333 100 <- Minus
arm_2L 16731943..16732033 17..107 98   Minus

BO14136.pep Sequence

Translation from 16 to 637

> BO14136.pep
METLLGIKGPDFVMLAADTTHARSIIVMKEDQNKIHKVSDSLLISTVGES
GDTEQFTEFISKNIALYKMRNGYDLSPRESAHFTRKNLAEYLRSRTPYQV
FMFVAGYDPNAGPELTFIDYLANALPVNYAGHGYGAIFASSIYDRYWHPN
ITQAEAYDVFKKCIAEIQKRLVVNLKNFTVAVVDKDGVRDLEPISAASLA
AASFLDH

BO14136.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4-PB 201 CG17331-PB 1..201 1..201 1034 100 Plus
Prosbeta4-PA 201 CG17331-PA 1..201 1..201 1034 100 Plus
Prosbeta4R2-PB 210 CG17302-PB 3..201 1..199 609 55.3 Plus
Prosbeta4R2-PA 210 CG17302-PA 3..201 1..199 609 55.3 Plus
Prosbeta4R1-PA 215 CG17301-PA 1..199 1..199 489 43.2 Plus