Clone Sequence Records
BO14136.3prime Sequence
611 bp (579 high quality bases) assembled on 2006-05-29
> BO14136.3prime
ATGGTCTAGAAAGCTTGCAGCGGCCAGGCTAGCAGCGCTGATTGGCTCCA
AATCTCGCACACCATCCTTGTCCACGACGGCGACGGTGAAGTTCTTGAGG
TTGACGACCAGGCGCTTCTGGATTTCGGCAATGCACTTCTTGAAGACGTC
GTAGGCCTCCGCCTGGGTTATATTGGGGTGCCAGTATCGGTCATAGATGC
TGGATGCGAAGATCGCACCATAGCCATGACCGGCGTAATTCACAGGCAGT
GCATTGGCCAAATAGTCAATGAAGGTGAGCTCCGGACCCGCGTTGGGATC
GTAGCCGGCCACAAACATGAACACTTGGTAGGGCGTGCGACTGCGAAGAT
ATTCGGCCAGATTCTTGCGAGTAAAATGAGCCGATTCACGTGGACTTAAA
TCGTAGCCATTGCGCATCTTGTACAACGCTATGTTCTTCGAAATGAATTC
GGTAAATTGCTCCGTGTCGCCCGATTCGCCGACGGTTGAAATAAGCAGAC
TATCCGACACCTTGTGGATTTTGTTCTGATCCTCTTTCATCACTATAATG
GATCGGGCGTGGGTGGTGTCCGCCGCCAGCATCACGAAGTCCGGGCCCTT
GATACCCAGTA
BO14136.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17331-PA | 606 | CG17331-RA | 11..603 | 611..19 | 2940 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4-RB | 815 | CG17331-RB | 111..703 | 611..19 | 2950 | 99.8 | Minus |
Prosbeta4-RA | 774 | CG17331-RA | 111..703 | 611..19 | 2950 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16731292..16731578 | 19..305 | 1435 | 100 | Plus |
2L | 23513712 | 2L | 16731643..16731869 | 305..531 | 1135 | 100 | Plus |
2L | 23513712 | 2L | 16731943..16732023 | 531..611 | 390 | 98.8 | Plus |
Blast to na_te.dros performed 2015-02-02 19:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3255..3304 | 235..284 | 106 | 68 | Plus |
BO14136.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:32 Download gff for
BO14136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17331-PA | 12..606 | 18..610 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:02 Download gff for
BO14136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17331-PA | 12..606 | 18..610 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:55:44 Download gff for
BO14136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RA | 112..708 | 11..610 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:12:37 Download gff for
BO14136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RA | 112..708 | 11..610 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:12:37 Download gff for
BO14136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16731287..16731577 | 11..304 | 98 | <- | Plus |
2L | 16731643..16731868 | 305..530 | 100 | <- | Plus |
2L | 16731943..16732022 | 531..610 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:55:44 Download gff for
BO14136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16731643..16731868 | 305..530 | 100 | <- | Plus |
arm_2L | 16731943..16732022 | 531..610 | 98 | | Plus |
arm_2L | 16731287..16731577 | 11..304 | 98 | <- | Plus |
BO14136.complete Sequence
637 bp assembled on 2007-12-14
GenBank Submission: FJ633029
> BO14136.complete
GAAGTTATCAGTCGACATGGAGACTCTACTGGGTATCAAGGGCCCGGACT
TCGTGATGCTGGCGGCGGACACCACCCACGCCCGATCCATTATAGTGATG
AAAGAGGATCAGAACAAAATCCACAAGGTGTCGGATAGTCTGCTTATTTC
AACCGTCGGCGAATCGGGCGACACGGAGCAATTTACCGAATTCATTTCGA
AGAACATAGCGTTGTACAAGATGCGCAATGGCTACGATTTAAGTCCACGT
GAATCGGCTCATTTTACTCGCAAGAATCTGGCCGAATATCTTCGCAGTCG
CACGCCCTACCAAGTGTTCATGTTTGTGGCCGGCTACGATCCCAACGCGG
GTCCGGAGCTCACCTTCATTGACTATTTGGCCAATGCACTGCCTGTGAAT
TACGCCGGTCATGGCTATGGTGCGATCTTCGCATCCAGCATCTATGACCG
ATACTGGCACCCCAATATAACCCAGGCGGAGGCCTACGACGTCTTCAAGA
AGTGCATTGCCGAAATCCAGAAGCGCCTGGTCGTCAACCTCAAGAACTTC
ACCGTCGCCGTCGTGGACAAGGATGGTGTGCGAGATTTGGAGCCAATCAG
CGCTGCTAGCCTGGCCGCTGCAAGCTTTCTAGACCAT
BO14136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4-RB | 606 | CG17331-PB | 1..603 | 17..619 | 3000 | 99.8 | Plus |
Prosbeta4-RA | 606 | CG17331-PA | 1..603 | 17..619 | 3000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4-RB | 815 | CG17331-RB | 99..703 | 15..619 | 3010 | 99.8 | Plus |
Prosbeta4-RA | 774 | CG17331-RA | 99..703 | 15..619 | 3010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16731292..16731578 | 619..333 | 1435 | 100 | Minus |
2L | 23513712 | 2L | 16731643..16731869 | 333..107 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 16731943..16732035 | 107..15 | 450 | 98.9 | Minus |
Blast to na_te.dros performed 2014-11-27 15:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3255..3304 | 403..354 | 106 | 68 | Minus |
BO14136.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:21 Download gff for
BO14136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17331-RA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:22 Download gff for
BO14136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17331-RA | 85..704 | 6..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:25 Download gff for
BO14136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RA | 101..703 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:00 Download gff for
BO14136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17331-RA | 97..699 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:28 Download gff for
BO14136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RA | 101..703 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:28 Download gff for
BO14136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16731290..16731577 | 334..621 | 99 | <- | Minus |
2L | 16731643..16731868 | 108..333 | 100 | <- | Minus |
2L | 16731943..16732033 | 17..107 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:25 Download gff for
BO14136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16731290..16731577 | 334..621 | 99 | <- | Minus |
arm_2L | 16731643..16731868 | 108..333 | 100 | <- | Minus |
arm_2L | 16731943..16732033 | 17..107 | 98 | | Minus |
BO14136.pep Sequence
Translation from 16 to 637
> BO14136.pep
METLLGIKGPDFVMLAADTTHARSIIVMKEDQNKIHKVSDSLLISTVGES
GDTEQFTEFISKNIALYKMRNGYDLSPRESAHFTRKNLAEYLRSRTPYQV
FMFVAGYDPNAGPELTFIDYLANALPVNYAGHGYGAIFASSIYDRYWHPN
ITQAEAYDVFKKCIAEIQKRLVVNLKNFTVAVVDKDGVRDLEPISAASLA
AASFLDH
BO14136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4-PB | 201 | CG17331-PB | 1..201 | 1..201 | 1034 | 100 | Plus |
Prosbeta4-PA | 201 | CG17331-PA | 1..201 | 1..201 | 1034 | 100 | Plus |
Prosbeta4R2-PB | 210 | CG17302-PB | 3..201 | 1..199 | 609 | 55.3 | Plus |
Prosbeta4R2-PA | 210 | CG17302-PA | 3..201 | 1..199 | 609 | 55.3 | Plus |
Prosbeta4R1-PA | 215 | CG17301-PA | 1..199 | 1..199 | 489 | 43.2 | Plus |