Clone Sequence Records
BO14140.3prime Sequence
548 bp (547 high quality bases) assembled on 2006-05-29
> BO14140.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGGGCTCGCCCTTGGGGTTGTAGGGCT
TCATAAGGTTCTCGGAGAAAGAACGGATGCTCTCTGGACCGCGCACCTCT
TTCTCGAGGAGCGGCAACTTGGTTACGTGGAAGTCTTCATACAGGTCGGC
AATCTGGTCCAGGTACTTCTCCTGAATCTTGAAGCGGGAGGCGCACATGC
TGCACGAGTCGTGCGAGTTCTGCAGAAACAGCAGTTGGTTTACAATGATG
TTGTGGACGTCGATGCCGCACTTGGTTAGCTCTTGCACAAGTCGTTCCGT
CTCGTACAGCGAGAAGAACTCTGCTATGCACACGCAGACGAATGTAGTTT
GATCTGGGTTCTTGAACTGCTCGTTGACCTGGGTGATAACGCGCAGCATG
TCGTCCAGCTTCTGGGAGAGTGTGTCAGCGTTCACATTCAGCCATGCCCA
GCATGGAGACGAACTGTGACAGCAGGGGCGCCACCTTCATCTTGAGCCGC
AGCAGCTTGCCCAGCCCCTTCTCCACCACCTGGGGAAATGCAATCAGA
BO14140.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-PA | 1011 | CG1598-RA | 590..1008 | 437..19 | 2095 | 100 | Minus |
CG1598-PA | 1011 | CG1598-RA | 480..590 | 548..438 | 555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-RA | 1259 | CG1598-RA | 586..1114 | 548..19 | 2625 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7538377..7538712 | 19..354 | 1680 | 100 | Plus |
2R | 25286936 | 2R | 7538771..7538964 | 354..548 | 925 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:24:52 has no hits.
BO14140.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:37 Download gff for
BO14140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-PA | 481..1011 | 18..547 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:10 Download gff for
BO14140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-PA | 481..1011 | 18..547 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:13 Download gff for
BO14140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 587..1114 | 19..547 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:55:22 Download gff for
BO14140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 587..1114 | 19..547 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:55:22 Download gff for
BO14140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7538377..7538712 | 19..354 | 100 | <- | Plus |
2R | 7538772..7538963 | 355..547 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:13 Download gff for
BO14140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3426277..3426468 | 355..547 | 99 | | Plus |
arm_2R | 3425882..3426217 | 19..354 | 100 | <- | Plus |
BO14140.5prime Sequence
628 bp (627 high quality bases) assembled on 2006-05-29
> BO14140.5prime
GAAGTTATCAGTCGACATGGCCGACAATTTGGAGCCCCTGGAGCCCAGCC
TGCAGAATCTCGTCGAGCAGGACTCCCTCAAGTGGATCTTCGTGGGCGGA
AAAGGCGGCGTGGGCAAGACGACTTGCAGTTCTAGCCTAGCCGTTCAGCT
GTCGAAAGTGCGCGAATCCGTGCTAATCATATCCACAGATCCGGCGCACA
ACATATCGGATGCATTCGATCAGAAGTTCACCAAGGTGCCGACAAAGGTA
AATGGCTTTGACAACCTGTTCGCCATGGAAATCGATCCAAATGCCGGTCT
CAACGAGCTGCCCGAGGAGTACTTCGATGGCGAAAATGAGGCGCTGCGCG
TGAGCAAGGGCGTCATGCAGGAGATGATCAACGCCCTGCCCGGCATCGAC
GAGGCGATGAGCTATGCAGAGGTTATGAAGCTGGTCAAGGGCATGAACTT
CTCGGTAGTCGTCTTCGACACGGCGCCCACGGGACACACGCTGCGTCTGA
TTGCATTTCCCCAGGTGGTGGAGAAGGGGCTGGGCAAGCTGCTGCGGCTC
AAGATGAAGGTGGCGCCCCTGCTGTCACAGTTCGTCTCCATGCTGGGCTT
GGCTGATGTGAACGCTGACACACTCTCC
BO14140.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-PA | 1011 | CG1598-RA | 1..612 | 17..628 | 3035 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-RA | 1259 | CG1598-RA | 107..718 | 17..628 | 3045 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7538832..7539214 | 628..246 | 1900 | 99.7 | Minus |
2R | 25286936 | 2R | 7539295..7539416 | 249..128 | 610 | 100 | Minus |
2R | 25286936 | 2R | 7539478..7539590 | 129..17 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:23:24 has no hits.
BO14140.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:38 Download gff for
BO14140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-PA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:11 Download gff for
BO14140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-PA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:45:09 Download gff for
BO14140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..718 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:22:07 Download gff for
BO14140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..718 | 17..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:22:07 Download gff for
BO14140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7538832..7539212 | 248..628 | 99 | <- | Minus |
2R | 7539297..7539414 | 130..247 | 100 | <- | Minus |
2R | 7539478..7539590 | 17..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:45:09 Download gff for
BO14140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3426337..3426717 | 248..628 | 99 | <- | Minus |
arm_2R | 3426802..3426919 | 130..247 | 100 | <- | Minus |
arm_2R | 3426983..3427095 | 17..129 | 100 | | Minus |
BO14140.complete Sequence
1042 bp assembled on 2007-10-17
GenBank Submission: FJ638724
> BO14140.complete
GAAGTTATCAGTCGACATGGCCGACAATTTGGAGCCCCTGGAGCCCAGCC
TGCAGAATCTCGTCGAGCAGGACTCCCTCAAGTGGATCTTCGTGGGCGGA
AAAGGCGGCGTGGGCAAGACGACTTGCAGTTCTAGCCTAGCCGTTCAGCT
GTCGAAAGTGCGCGAATCCGTGCTAATCATATCCACAGATCCGGCGCACA
ACATATCGGATGCATTCGATCAGAAGTTCACCAAGGTGCCGACAAAGGTA
AATGGCTTTGACAACCTGTTCGCCATGGAAATCGATCCAAATGCCGGTCT
CAACGAGCTGCCCGAGGAGTACTTCGATGGCGAAAATGAGGCGCTGCGCG
TGAGCAAGGGCGTCATGCAGGAGATGATCAACGCCCTGCCCGGCATCGAC
GAGGCGATGAGCTATGCAGAGGTTATGAAGCTGGTCAAGGGCATGAACTT
CTCGGTAGTCGTCTTCGACACGGCGCCCACGGGACACACGCTGCGTCTGA
TTGCATTTCCCCAGGTGGTGGAGAAGGGGCTGGGCAAGCTGCTGCGGCTC
AAGATGAAGGTGGCGCCCCTGCTGTCACAGTTCGTCTCCATGCTGGGCAT
GGCTGATGTGAACGCTGACACACTCTCCCAGAAGCTGGACGACATGCTGC
GCGTTATCACCCAGGTCAACGAGCAGTTCAAGAACCCAGATCAAACTACA
TTCGTCTGCGTGTGCATAGCAGAGTTCTTCTCGCTGTACGAGACGGAACG
ACTTGTGCAAGAGCTAACCAAGTGCGGCATCGACGTCCACAACATCATTG
TAAACCAACTGCTGTTTCTGCAGAACTCGCACGACTCGTGCAGCATGTGC
GCCTCCCGCTTCAAGATTCAGGAGAAGTACCTGGACCAGATTGCCGACCT
GTATGAAGACTTCCACGTAACCAAGTTGCCGCTCCTCGAGAAAGAGGTGC
GCGGTCCAGAGAGCATCCGTTCTTTCTCCGAGAACCTTATGAAGCCCTAC
AACCCCAAGGGCGAGCCCAAGGAAGCAAGCTTTCTAGACCAT
BO14140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-RA | 1011 | CG1598-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-RA | 1259 | CG1598-RA | 107..1114 | 17..1024 | 5040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7538771..7539214 | 689..246 | 2220 | 100 | Minus |
2R | 25286936 | 2R | 7538377..7538712 | 1024..689 | 1680 | 100 | Minus |
2R | 25286936 | 2R | 7539295..7539416 | 249..128 | 610 | 100 | Minus |
2R | 25286936 | 2R | 7539478..7539590 | 129..17 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:52:52 has no hits.
BO14140.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:22 Download gff for
BO14140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 1..1011 | 17..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:34 Download gff for
BO14140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..1114 | 17..1024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:07 Download gff for
BO14140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..1114 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:59 Download gff for
BO14140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..1114 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:37 Download gff for
BO14140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1598-RA | 107..1114 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:37 Download gff for
BO14140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7538375..7538712 | 689..1026 | 99 | <- | Minus |
2R | 7538772..7539212 | 248..688 | 100 | <- | Minus |
2R | 7539297..7539414 | 130..247 | 100 | <- | Minus |
2R | 7539478..7539590 | 17..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:07 Download gff for
BO14140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3425880..3426217 | 689..1026 | 99 | <- | Minus |
arm_2R | 3426277..3426717 | 248..688 | 100 | <- | Minus |
arm_2R | 3426802..3426919 | 130..247 | 100 | <- | Minus |
arm_2R | 3426983..3427095 | 17..129 | 100 | | Minus |
BO14140.pep Sequence
Translation from 16 to 1042
> BO14140.pep
MADNLEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLSKVRE
SVLIISTDPAHNISDAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPE
EYFDGENEALRVSKGVMQEMINALPGIDEAMSYAEVMKLVKGMNFSVVVF
DTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAPLLSQFVSMLGMADVNA
DTLSQKLDDMLRVITQVNEQFKNPDQTTFVCVCIAEFFSLYETERLVQEL
TKCGIDVHNIIVNQLLFLQNSHDSCSMCASRFKIQEKYLDQIADLYEDFH
VTKLPLLEKEVRGPESIRSFSENLMKPYNPKGEPKEASFLDH
BO14140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1598-PA | 336 | CG1598-PA | 1..336 | 1..336 | 1719 | 100 | Plus |