Clone BO14140 Report

Search the DGRC for BO14140

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:141
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG1598-RA
Protein status:BO14140.pep: validated full length
Sequenced Size:1042

Clone Sequence Records

BO14140.3prime Sequence

548 bp (547 high quality bases) assembled on 2006-05-29

> BO14140.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGGGCTCGCCCTTGGGGTTGTAGGGCT
TCATAAGGTTCTCGGAGAAAGAACGGATGCTCTCTGGACCGCGCACCTCT
TTCTCGAGGAGCGGCAACTTGGTTACGTGGAAGTCTTCATACAGGTCGGC
AATCTGGTCCAGGTACTTCTCCTGAATCTTGAAGCGGGAGGCGCACATGC
TGCACGAGTCGTGCGAGTTCTGCAGAAACAGCAGTTGGTTTACAATGATG
TTGTGGACGTCGATGCCGCACTTGGTTAGCTCTTGCACAAGTCGTTCCGT
CTCGTACAGCGAGAAGAACTCTGCTATGCACACGCAGACGAATGTAGTTT
GATCTGGGTTCTTGAACTGCTCGTTGACCTGGGTGATAACGCGCAGCATG
TCGTCCAGCTTCTGGGAGAGTGTGTCAGCGTTCACATTCAGCCATGCCCA
GCATGGAGACGAACTGTGACAGCAGGGGCGCCACCTTCATCTTGAGCCGC
AGCAGCTTGCCCAGCCCCTTCTCCACCACCTGGGGAAATGCAATCAGA

BO14140.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-PA 1011 CG1598-RA 590..1008 437..19 2095 100 Minus
CG1598-PA 1011 CG1598-RA 480..590 548..438 555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-RA 1259 CG1598-RA 586..1114 548..19 2625 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7538377..7538712 19..354 1680 100 Plus
2R 25286936 2R 7538771..7538964 354..548 925 99.5 Plus
Blast to na_te.dros performed on 2015-02-08 13:24:52 has no hits.

BO14140.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:37 Download gff for BO14140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-PA 481..1011 18..547 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:10 Download gff for BO14140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-PA 481..1011 18..547 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:13 Download gff for BO14140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 587..1114 19..547 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:55:22 Download gff for BO14140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 587..1114 19..547 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:55:22 Download gff for BO14140.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7538377..7538712 19..354 100 <- Plus
2R 7538772..7538963 355..547 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:13 Download gff for BO14140.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3426277..3426468 355..547 99   Plus
arm_2R 3425882..3426217 19..354 100 <- Plus

BO14140.5prime Sequence

628 bp (627 high quality bases) assembled on 2006-05-29

> BO14140.5prime
GAAGTTATCAGTCGACATGGCCGACAATTTGGAGCCCCTGGAGCCCAGCC
TGCAGAATCTCGTCGAGCAGGACTCCCTCAAGTGGATCTTCGTGGGCGGA
AAAGGCGGCGTGGGCAAGACGACTTGCAGTTCTAGCCTAGCCGTTCAGCT
GTCGAAAGTGCGCGAATCCGTGCTAATCATATCCACAGATCCGGCGCACA
ACATATCGGATGCATTCGATCAGAAGTTCACCAAGGTGCCGACAAAGGTA
AATGGCTTTGACAACCTGTTCGCCATGGAAATCGATCCAAATGCCGGTCT
CAACGAGCTGCCCGAGGAGTACTTCGATGGCGAAAATGAGGCGCTGCGCG
TGAGCAAGGGCGTCATGCAGGAGATGATCAACGCCCTGCCCGGCATCGAC
GAGGCGATGAGCTATGCAGAGGTTATGAAGCTGGTCAAGGGCATGAACTT
CTCGGTAGTCGTCTTCGACACGGCGCCCACGGGACACACGCTGCGTCTGA
TTGCATTTCCCCAGGTGGTGGAGAAGGGGCTGGGCAAGCTGCTGCGGCTC
AAGATGAAGGTGGCGCCCCTGCTGTCACAGTTCGTCTCCATGCTGGGCTT
GGCTGATGTGAACGCTGACACACTCTCC

BO14140.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-PA 1011 CG1598-RA 1..612 17..628 3035 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-RA 1259 CG1598-RA 107..718 17..628 3045 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7538832..7539214 628..246 1900 99.7 Minus
2R 25286936 2R 7539295..7539416 249..128 610 100 Minus
2R 25286936 2R 7539478..7539590 129..17 565 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:23:24 has no hits.

BO14140.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:19:38 Download gff for BO14140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-PA 1..612 17..628 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:12:11 Download gff for BO14140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-PA 1..612 17..628 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:45:09 Download gff for BO14140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..718 17..628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:22:07 Download gff for BO14140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..718 17..628 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:22:07 Download gff for BO14140.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7538832..7539212 248..628 99 <- Minus
2R 7539297..7539414 130..247 100 <- Minus
2R 7539478..7539590 17..129 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:45:09 Download gff for BO14140.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3426337..3426717 248..628 99 <- Minus
arm_2R 3426802..3426919 130..247 100 <- Minus
arm_2R 3426983..3427095 17..129 100   Minus

BO14140.complete Sequence

1042 bp assembled on 2007-10-17

GenBank Submission: FJ638724

> BO14140.complete
GAAGTTATCAGTCGACATGGCCGACAATTTGGAGCCCCTGGAGCCCAGCC
TGCAGAATCTCGTCGAGCAGGACTCCCTCAAGTGGATCTTCGTGGGCGGA
AAAGGCGGCGTGGGCAAGACGACTTGCAGTTCTAGCCTAGCCGTTCAGCT
GTCGAAAGTGCGCGAATCCGTGCTAATCATATCCACAGATCCGGCGCACA
ACATATCGGATGCATTCGATCAGAAGTTCACCAAGGTGCCGACAAAGGTA
AATGGCTTTGACAACCTGTTCGCCATGGAAATCGATCCAAATGCCGGTCT
CAACGAGCTGCCCGAGGAGTACTTCGATGGCGAAAATGAGGCGCTGCGCG
TGAGCAAGGGCGTCATGCAGGAGATGATCAACGCCCTGCCCGGCATCGAC
GAGGCGATGAGCTATGCAGAGGTTATGAAGCTGGTCAAGGGCATGAACTT
CTCGGTAGTCGTCTTCGACACGGCGCCCACGGGACACACGCTGCGTCTGA
TTGCATTTCCCCAGGTGGTGGAGAAGGGGCTGGGCAAGCTGCTGCGGCTC
AAGATGAAGGTGGCGCCCCTGCTGTCACAGTTCGTCTCCATGCTGGGCAT
GGCTGATGTGAACGCTGACACACTCTCCCAGAAGCTGGACGACATGCTGC
GCGTTATCACCCAGGTCAACGAGCAGTTCAAGAACCCAGATCAAACTACA
TTCGTCTGCGTGTGCATAGCAGAGTTCTTCTCGCTGTACGAGACGGAACG
ACTTGTGCAAGAGCTAACCAAGTGCGGCATCGACGTCCACAACATCATTG
TAAACCAACTGCTGTTTCTGCAGAACTCGCACGACTCGTGCAGCATGTGC
GCCTCCCGCTTCAAGATTCAGGAGAAGTACCTGGACCAGATTGCCGACCT
GTATGAAGACTTCCACGTAACCAAGTTGCCGCTCCTCGAGAAAGAGGTGC
GCGGTCCAGAGAGCATCCGTTCTTTCTCCGAGAACCTTATGAAGCCCTAC
AACCCCAAGGGCGAGCCCAAGGAAGCAAGCTTTCTAGACCAT

BO14140.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-RA 1011 CG1598-PA 1..1008 17..1024 5040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-RA 1259 CG1598-RA 107..1114 17..1024 5040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7538771..7539214 689..246 2220 100 Minus
2R 25286936 2R 7538377..7538712 1024..689 1680 100 Minus
2R 25286936 2R 7539295..7539416 249..128 610 100 Minus
2R 25286936 2R 7539478..7539590 129..17 565 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:52:52 has no hits.

BO14140.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:22 Download gff for BO14140.complete
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 1..1011 17..1025 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:34 Download gff for BO14140.complete
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..1114 17..1024 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:07 Download gff for BO14140.complete
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..1114 17..1026 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:59 Download gff for BO14140.complete
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..1114 17..1026 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:37 Download gff for BO14140.complete
Subject Subject Range Query Range Percent Splice Strand
CG1598-RA 107..1114 17..1026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:37 Download gff for BO14140.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7538375..7538712 689..1026 99 <- Minus
2R 7538772..7539212 248..688 100 <- Minus
2R 7539297..7539414 130..247 100 <- Minus
2R 7539478..7539590 17..129 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:07 Download gff for BO14140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3425880..3426217 689..1026 99 <- Minus
arm_2R 3426277..3426717 248..688 100 <- Minus
arm_2R 3426802..3426919 130..247 100 <- Minus
arm_2R 3426983..3427095 17..129 100   Minus

BO14140.pep Sequence

Translation from 16 to 1042

> BO14140.pep
MADNLEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLSKVRE
SVLIISTDPAHNISDAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPE
EYFDGENEALRVSKGVMQEMINALPGIDEAMSYAEVMKLVKGMNFSVVVF
DTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAPLLSQFVSMLGMADVNA
DTLSQKLDDMLRVITQVNEQFKNPDQTTFVCVCIAEFFSLYETERLVQEL
TKCGIDVHNIIVNQLLFLQNSHDSCSMCASRFKIQEKYLDQIADLYEDFH
VTKLPLLEKEVRGPESIRSFSENLMKPYNPKGEPKEASFLDH

BO14140.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1598-PA 336 CG1598-PA 1..336 1..336 1719 100 Plus